Wall clock time and date at job start Tue Mar 31 2020 07:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 H 1.09003 * 110.45761 * 52.39663 * 3 2 1 5 5 C 1.54475 * 110.62819 * 289.71117 * 3 2 1 6 6 O 1.44429 * 104.80426 * 265.27650 * 5 3 2 7 7 C 1.44428 * 105.27439 * 319.48841 * 6 5 3 8 8 C 1.54484 * 104.80469 * 40.50847 * 7 6 5 9 9 H 1.08999 * 110.62933 * 94.72290 * 8 7 6 10 10 N 1.46892 * 110.51384 * 217.38080 * 8 7 6 11 11 C 1.46899 * 110.99750 * 269.64260 * 10 8 7 12 12 C 1.50706 * 109.47341 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96338 * 89.99640 * 12 11 10 14 14 C 1.38283 * 120.13551 * 179.97438 * 13 12 11 15 15 C 1.38126 * 120.06873 * 0.02562 * 14 13 12 16 16 C 1.38855 * 119.92985 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.07004 * 180.02562 * 16 15 14 18 18 C 1.34832 * 116.99805 * 5.54346 * 17 16 15 19 19 H 1.07997 * 119.99755 * 354.93616 * 18 17 16 20 20 C 1.38656 * 119.99877 * 174.94518 * 18 17 16 21 21 N 1.31551 * 120.00203 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99677 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47198 * 59.99643 * 22 20 18 24 24 H 1.48505 * 109.47025 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47164 * 299.99546 * 22 20 18 26 26 C 1.38073 * 119.96379 * 270.27887 * 12 11 10 27 27 H 1.09001 * 109.47222 * 60.00176 * 1 2 3 28 28 H 1.09010 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47173 * 299.99871 * 1 2 3 30 30 H 1.08992 * 109.47489 * 240.00121 * 2 1 3 31 31 H 1.09001 * 109.47222 * 119.99824 * 2 1 3 32 32 H 1.08997 * 110.37344 * 24.10403 * 5 3 2 33 33 H 1.09004 * 110.37268 * 146.44507 * 5 3 2 34 34 H 1.09004 * 110.36861 * 281.68109 * 7 6 5 35 35 H 1.08992 * 110.37628 * 159.34195 * 7 6 5 36 36 H 1.00899 * 111.00516 * 33.59188 * 10 8 7 37 37 H 1.09003 * 109.47704 * 60.00061 * 11 10 8 38 38 H 1.09006 * 109.47085 * 299.99779 * 11 10 8 39 39 H 1.08000 * 119.93343 * 359.97438 * 13 12 11 40 40 H 1.07995 * 119.96216 * 180.02562 * 14 13 12 41 41 H 1.07995 * 120.03668 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99787 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.03730 * 0.03869 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5794 2.0094 0.8091 5 6 1.7616 2.1181 -1.3610 6 8 2.9790 1.9398 -2.1174 7 6 4.0494 2.1626 -1.1736 8 6 3.5796 1.4725 0.1262 9 1 3.9774 0.4596 0.1886 10 7 3.9846 2.2564 1.3006 11 6 5.3066 1.8359 1.7838 12 6 5.6873 2.6600 2.9868 13 6 5.3426 2.2303 4.2557 14 6 5.6906 2.9834 5.3620 15 6 6.3833 4.1678 5.2030 16 6 6.7307 4.6017 3.9305 17 8 7.4119 5.7650 3.7709 18 6 7.8212 6.3933 4.8915 19 1 7.5335 6.0120 5.8601 20 6 8.6114 7.5290 4.8003 21 7 8.9622 7.9932 3.6204 22 14 9.1779 8.3998 6.3528 23 1 9.9858 7.4658 7.1775 24 1 10.0047 9.5776 5.9860 25 1 7.9939 8.8480 7.1290 26 6 6.3746 3.8459 2.8208 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9274 1.6290 -1.8639 33 1 1.5529 3.1790 -1.2224 34 1 4.1915 3.2303 -1.0063 35 1 4.9725 1.7077 -1.5325 36 1 3.9714 3.2447 1.0978 37 1 6.0449 1.9810 0.9951 38 1 5.2737 0.7823 2.0613 39 1 4.8007 1.3048 4.3826 40 1 5.4205 2.6451 6.3514 41 1 6.6545 4.7557 6.0673 42 1 9.5153 8.7875 3.5567 43 1 6.6389 4.1834 1.8295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699533704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:04 Heat of formation + Delta-G solvation = -76.118402 kcal Electronic energy + Delta-G solvation = -22643.084495 eV Core-core repulsion = 19266.627793 eV Total energy + Delta-G solvation = -3376.456702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98707 -40.64215 -38.53270 -36.40190 -35.21975 -34.28711 -32.43474 -30.82100 -29.58388 -28.85798 -27.37528 -25.71081 -25.00946 -23.21134 -22.41515 -22.27698 -21.07219 -19.49560 -18.81816 -17.45743 -17.37750 -16.74021 -16.64825 -16.20515 -16.11076 -15.68553 -15.39839 -15.30305 -15.17408 -14.73975 -14.27271 -14.18147 -13.99936 -13.79441 -13.53839 -13.18502 -12.97418 -12.83677 -12.60910 -12.44692 -12.38751 -12.33609 -12.22590 -12.09142 -11.78251 -11.59141 -11.39742 -11.17239 -10.79677 -10.77135 -9.74145 -9.34935 -8.97256 -8.46990 -6.15412 0.52185 0.76971 1.34606 1.45398 1.50783 2.17737 2.73855 2.92977 3.14945 3.36014 3.51400 3.67473 3.73180 3.95462 3.98339 4.13089 4.15265 4.18077 4.33968 4.43165 4.46884 4.56361 4.61968 4.63210 4.69902 4.72101 4.76596 4.76944 4.85206 4.96288 5.06464 5.12225 5.13581 5.23182 5.32393 5.37177 5.47982 5.66254 5.72955 5.74584 5.80533 6.02522 6.05005 6.24821 6.29466 6.97986 7.79290 8.76179 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.002907 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.608226 B = 9628.951815 C =10270.286915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.109 4.109 4 H 0.091 0.909 5 C 0.041 3.959 6 O -0.393 6.393 7 C 0.013 3.987 8 C 0.064 3.936 9 H 0.102 0.898 10 N -0.672 5.672 11 C 0.110 3.890 12 C -0.038 4.038 13 C -0.169 4.169 14 C -0.074 4.074 15 C -0.245 4.245 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.195 4.195 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.341 0.659 37 H 0.040 0.960 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.117 0.883 42 H 0.272 0.728 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 -15.968 -4.681 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.128 4.128 4 H 0.109 0.891 5 C -0.035 4.035 6 O -0.311 6.311 7 C -0.066 4.066 8 C -0.047 4.047 9 H 0.120 0.880 10 N -0.303 5.303 11 C -0.018 4.018 12 C -0.038 4.038 13 C -0.188 4.188 14 C -0.091 4.091 15 C -0.264 4.264 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.561 5.561 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.215 4.215 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.160 0.840 37 H 0.058 0.942 38 H 0.119 0.881 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.144 -16.143 -4.769 21.986 hybrid contribution 1.203 1.479 0.020 1.906 sum -12.941 -14.664 -4.749 20.126 Atomic orbital electron populations 1.21811 0.94930 1.02203 1.02008 1.21468 0.96546 0.94333 1.02165 1.22547 0.94278 0.98274 0.97712 0.89055 1.23711 0.88100 1.00058 0.91667 1.89099 1.16068 1.91909 1.34038 1.24303 0.92057 0.99792 0.90409 1.23082 0.95856 0.98426 0.87314 0.88031 1.60626 1.27535 1.08885 1.33257 1.20872 0.89317 0.98938 0.92721 1.19554 0.95412 0.92932 0.95950 1.20952 1.04644 1.02071 0.91128 1.21161 0.95275 0.92656 1.00052 1.21312 1.07807 1.00940 0.96356 1.19883 0.92258 0.86612 0.95055 1.83936 1.64552 1.30878 1.34724 1.21770 1.32276 1.09610 0.85326 0.88194 1.26574 0.95921 0.97050 1.02484 1.70175 1.36319 1.23747 1.25812 0.84666 0.78845 0.77505 0.75320 1.18177 1.19656 1.18146 1.20243 1.07831 0.97206 0.96224 0.92335 0.91972 0.92661 0.91918 0.91457 0.87597 0.92367 0.92749 0.88559 0.83977 0.94172 0.88102 0.83718 0.83830 0.86551 0.91880 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.78 71.98 0.70 -1.09 16 2 C -0.11 -1.50 5.18 30.59 0.16 -1.34 16 3 C -0.11 -1.81 2.89 -9.78 -0.03 -1.84 16 4 H 0.09 1.66 7.97 -2.39 -0.02 1.64 16 5 C 0.04 0.72 7.04 72.48 0.51 1.23 16 6 O -0.39 -8.91 11.65 -148.98 -1.74 -10.64 16 7 C 0.01 0.27 7.31 72.49 0.53 0.80 16 8 C 0.06 1.18 3.09 45.94 0.14 1.32 16 9 H 0.10 1.73 7.41 -2.39 -0.02 1.71 16 10 N -0.67 -14.96 6.24 -490.31 -3.06 -18.02 16 11 C 0.11 2.63 5.67 85.56 0.49 3.11 16 12 C -0.04 -1.23 5.39 -19.88 -0.11 -1.33 16 13 C -0.17 -5.14 9.70 22.30 0.22 -4.93 16 14 C -0.07 -2.49 10.04 22.25 0.22 -2.26 16 15 C -0.24 -10.64 9.17 22.39 0.21 -10.44 16 16 C 0.11 5.57 6.65 22.58 0.15 5.72 16 17 O -0.23 -14.15 9.76 -22.76 -0.22 -14.37 16 18 C -0.41 -24.24 9.49 67.92 0.64 -23.60 16 19 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 20 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 21 N -0.92 -56.95 13.67 21.61 0.30 -56.65 16 22 Si 1.02 42.99 29.55 68.60 2.03 45.02 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 26 C -0.20 -8.17 9.65 22.39 0.22 -7.95 16 27 H 0.06 0.63 6.73 -2.39 -0.02 0.62 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 1.54 6.49 -2.39 -0.02 1.52 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.19 7.55 -2.38 -0.02 1.17 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.34 8.41 8.07 -89.69 -0.72 7.69 16 37 H 0.04 0.96 8.09 -2.39 -0.02 0.94 16 38 H 0.10 2.01 8.02 -2.38 -0.02 1.99 16 39 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 41 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 42 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -69.64 351.23 2.10 -67.54 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.28 Total: 30.58 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 4.52 Total: -43.45 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -2.76 Total: -74.67 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.96 Total: -25.02 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -69.64 2.10 -67.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699533704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.583 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds