Wall clock time and date at job start Tue Mar 31 2020 07:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47490 * 2 1 4 4 H 1.09012 * 110.45087 * 307.60641 * 3 2 1 5 5 C 1.54480 * 110.62984 * 70.28576 * 3 2 1 6 6 O 1.44422 * 104.80130 * 142.68177 * 5 3 2 7 7 C 1.44417 * 105.27990 * 319.49243 * 6 5 3 8 8 C 1.54483 * 104.80490 * 40.51045 * 7 6 5 9 9 H 1.08999 * 110.63438 * 217.32644 * 8 7 6 10 10 N 1.46892 * 110.51354 * 94.66471 * 8 7 6 11 11 C 1.46904 * 111.00075 * 90.36056 * 10 8 7 12 12 C 1.50699 * 109.47612 * 179.97438 * 11 10 8 13 13 C 1.38318 * 119.96777 * 269.98354 * 12 11 10 14 14 C 1.38273 * 120.14045 * 180.02562 * 13 12 11 15 15 C 1.38121 * 120.06960 * 359.74379 * 14 13 12 16 16 C 1.38860 * 119.92669 * 0.50459 * 15 14 13 17 17 O 1.35759 * 120.06858 * 179.76814 * 16 15 14 18 18 C 1.34825 * 116.99907 * 5.24185 * 17 16 15 19 19 H 1.08006 * 120.00067 * 354.92305 * 18 17 16 20 20 C 1.38655 * 119.99919 * 174.91789 * 18 17 16 21 21 N 1.31560 * 120.00001 * 179.72425 * 20 18 17 22 22 Si 1.86797 * 120.00168 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47101 * 89.99493 * 22 20 18 24 24 H 1.48493 * 109.47255 * 210.00106 * 22 20 18 25 25 H 1.48502 * 109.47087 * 330.00222 * 22 20 18 26 26 C 1.38081 * 119.96284 * 89.99703 * 12 11 10 27 27 H 1.08995 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46683 * 300.00053 * 1 2 3 29 29 H 1.08995 * 109.46828 * 59.99982 * 1 2 3 30 30 H 1.08998 * 109.46846 * 239.99612 * 2 1 3 31 31 H 1.09008 * 109.47113 * 120.00033 * 2 1 3 32 32 H 1.09001 * 110.37505 * 261.51886 * 5 3 2 33 33 H 1.09001 * 110.36834 * 23.74361 * 5 3 2 34 34 H 1.09004 * 110.37444 * 281.68013 * 7 6 5 35 35 H 1.09001 * 110.37705 * 159.34155 * 7 6 5 36 36 H 1.00897 * 111.00137 * 326.41120 * 10 8 7 37 37 H 1.09009 * 109.46665 * 59.99982 * 11 10 8 38 38 H 1.09002 * 109.47091 * 300.00378 * 11 10 8 39 39 H 1.08007 * 119.93043 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.97183 * 179.97438 * 14 13 12 41 41 H 1.08003 * 120.04339 * 180.25311 * 15 14 13 42 42 H 0.97000 * 119.99688 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.03503 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5795 2.0093 -0.8092 5 6 1.7618 2.1182 1.3610 6 8 2.9175 2.9497 1.6033 7 6 4.0495 2.1625 1.1736 8 6 3.5798 1.4723 -0.1262 9 1 3.9775 0.4594 -0.1886 10 7 3.9848 2.2561 -1.3006 11 6 5.3068 1.8355 -1.7839 12 6 5.6875 2.6595 -2.9869 13 6 5.3432 2.2297 -4.2557 14 6 5.6912 2.9826 -5.3621 15 6 6.3794 4.1695 -5.2028 16 6 6.7310 4.6011 -3.9307 17 8 7.4116 5.7649 -3.7711 18 6 7.6206 6.5082 -4.8764 19 1 7.3251 6.1313 -5.8445 20 6 8.2150 7.7564 -4.7703 21 7 8.4239 8.4794 -5.8494 22 14 8.7266 8.4080 -3.0961 23 1 10.1234 7.9934 -2.8093 24 1 8.6399 9.8904 -3.0942 25 1 7.8232 7.8580 -2.0536 26 6 6.3799 3.8426 -2.8213 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 0.8604 2.7284 1.3044 33 1 1.6620 1.3667 2.1443 34 1 4.3025 1.4180 1.9285 35 1 4.9056 2.8068 0.9730 36 1 3.9717 3.2444 -1.0978 37 1 5.2738 0.7819 -2.0613 38 1 6.0451 1.9807 -0.9952 39 1 4.8022 1.3036 -4.3827 40 1 5.4214 2.6443 -6.3516 41 1 6.6474 4.7593 -6.0669 42 1 8.8400 9.3524 -5.7751 43 1 6.6490 4.1774 -1.8304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699533705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:08 Heat of formation + Delta-G solvation = -55.475148 kcal Electronic energy + Delta-G solvation = -22751.316063 eV Core-core repulsion = 19375.754520 eV Total energy + Delta-G solvation = -3375.561544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09516 -39.18072 -37.05126 -35.28245 -34.60682 -32.38301 -31.16328 -29.45957 -28.77258 -27.96853 -25.37835 -24.54431 -24.12584 -21.88550 -21.49952 -20.82077 -20.23583 -17.72280 -17.26897 -16.54883 -16.26372 -15.75166 -15.23690 -15.06578 -14.83217 -14.41969 -14.22025 -14.00072 -13.79021 -13.73702 -13.44671 -12.80617 -12.73163 -12.46495 -12.36109 -12.19980 -12.04739 -11.73204 -11.50664 -11.30138 -11.16015 -11.00395 -10.82905 -10.81700 -10.73250 -10.60796 -10.15461 -10.09311 -9.39150 -8.87214 -8.48114 -8.14433 -7.36986 -6.40846 -4.07966 2.00674 2.28087 3.23002 3.25522 3.40462 3.74243 3.99994 4.24139 4.35798 4.53271 4.57968 4.68145 4.80183 4.85551 4.94474 5.07392 5.10254 5.12615 5.13933 5.24619 5.31635 5.41491 5.48504 5.53780 5.57867 5.67408 5.73075 5.76120 5.78606 5.87949 5.94015 6.08304 6.12253 6.24043 6.49977 6.52553 6.77587 6.99284 7.09113 7.23155 7.31357 7.35131 7.60509 7.80577 8.04545 8.94530 9.56927 10.66951 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.003303 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.952589 B = 8476.172708 C = 9365.296546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.114 4.114 4 H 0.097 0.903 5 C 0.047 3.953 6 O -0.372 6.372 7 C 0.014 3.986 8 C 0.058 3.942 9 H 0.091 0.909 10 N -0.672 5.672 11 C 0.105 3.895 12 C -0.051 4.051 13 C -0.180 4.180 14 C -0.079 4.079 15 C -0.217 4.217 16 C 0.158 3.842 17 O -0.219 6.219 18 C -0.389 4.389 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.184 4.184 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.351 0.649 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 -16.653 12.266 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.134 4.134 4 H 0.116 0.884 5 C -0.030 4.030 6 O -0.291 6.291 7 C -0.065 4.065 8 C -0.053 4.053 9 H 0.110 0.890 10 N -0.303 5.303 11 C -0.023 4.023 12 C -0.051 4.051 13 C -0.199 4.199 14 C -0.097 4.097 15 C -0.237 4.237 16 C 0.107 3.893 17 O -0.124 6.124 18 C -0.465 4.465 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.204 4.204 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.170 0.830 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.987 -16.504 12.015 23.673 hybrid contribution 0.883 0.627 0.982 1.461 sum -11.104 -15.877 12.997 23.330 Atomic orbital electron populations 1.21792 0.95608 1.01644 1.02019 1.21527 0.96067 0.95231 1.02149 1.22657 0.95009 0.97169 0.98523 0.88437 1.23556 0.89923 0.94095 0.95418 1.89161 1.15476 1.39196 1.85260 1.24203 0.90583 0.95494 0.96219 1.23039 0.95234 0.98195 0.88787 0.89047 1.60593 1.28175 1.09376 1.32130 1.20860 0.88789 0.98606 0.94078 1.19136 0.97673 0.94351 0.93976 1.20471 1.06148 1.01437 0.91890 1.20802 0.96890 0.94135 0.97856 1.21318 1.05726 0.98916 0.97716 1.19036 0.90436 0.86839 0.93027 1.83570 1.64209 1.28298 1.36373 1.20761 1.41151 0.98810 0.85758 0.87652 1.24460 0.96050 0.94672 0.98803 1.69648 1.41833 1.12239 1.28165 0.86181 0.79658 0.77677 0.83400 1.19929 1.20810 1.18380 1.20027 1.06756 0.96673 0.96934 0.92742 0.92797 0.92379 0.91310 0.92137 0.89195 0.92442 0.92163 0.89089 0.82955 0.90477 0.94660 0.87434 0.87195 0.85018 0.91073 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.79 37.16 0.36 -0.62 16 2 C -0.11 -0.80 5.15 -26.73 -0.14 -0.94 16 3 C -0.11 -1.02 2.89 -89.05 -0.26 -1.27 16 4 H 0.10 1.01 7.97 -51.92 -0.41 0.60 16 5 C 0.05 0.43 6.52 37.93 0.25 0.67 16 6 O -0.37 -4.49 11.65 -35.23 -0.41 -4.90 16 7 C 0.01 0.14 7.08 37.94 0.27 0.41 16 8 C 0.06 0.57 3.09 -66.15 -0.20 0.37 16 9 H 0.09 0.80 7.41 -51.93 -0.38 0.41 16 10 N -0.67 -8.17 6.19 -106.33 -0.66 -8.83 16 11 C 0.10 1.34 5.67 -4.97 -0.03 1.31 16 12 C -0.05 -0.84 5.39 -104.65 -0.56 -1.41 16 13 C -0.18 -3.01 9.70 -39.54 -0.38 -3.39 16 14 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16 15 C -0.22 -4.71 9.17 -39.39 -0.36 -5.07 16 16 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 17 O -0.22 -5.81 8.59 0.03 0.00 -5.81 16 18 C -0.39 -11.03 9.95 30.89 0.31 -10.72 16 19 H 0.11 3.05 5.44 -52.48 -0.29 2.76 16 20 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 21 N -0.88 -25.60 13.96 55.48 0.77 -24.82 16 22 Si 0.91 21.84 28.62 -169.99 -4.86 16.97 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.18 -3.60 9.65 -39.40 -0.38 -3.98 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.32 7.63 -51.93 -0.40 -0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.39 7.97 -51.92 -0.41 -0.02 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.45 7.75 -51.93 -0.40 0.04 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.97 8.02 -51.93 -0.42 0.55 16 36 H 0.35 4.72 8.41 -39.29 -0.33 4.39 16 37 H 0.08 0.89 8.02 -51.92 -0.42 0.47 16 38 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.13 3.00 5.64 -52.48 -0.30 2.70 16 42 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.11 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -29.73 352.09 -8.43 -38.16 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.69 Total: 5.30 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -1.88 Total: -21.38 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.12 Total: -33.66 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.41 Total: -10.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.73 -8.43 -38.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699533705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.314 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds