Wall clock time and date at job start Tue Mar 31 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47490 * 2 1 4 4 H 1.09012 * 110.45087 * 307.60641 * 3 2 1 5 5 C 1.54480 * 110.62984 * 70.28576 * 3 2 1 6 6 O 1.44422 * 104.80130 * 142.68177 * 5 3 2 7 7 C 1.44417 * 105.27990 * 319.49243 * 6 5 3 8 8 C 1.54483 * 104.80490 * 40.51045 * 7 6 5 9 9 H 1.08999 * 110.63438 * 217.32644 * 8 7 6 10 10 N 1.46892 * 110.51354 * 94.66471 * 8 7 6 11 11 C 1.46904 * 111.00075 * 90.36056 * 10 8 7 12 12 C 1.50699 * 109.47612 * 179.97438 * 11 10 8 13 13 C 1.38318 * 119.96777 * 269.98354 * 12 11 10 14 14 C 1.38273 * 120.14045 * 180.02562 * 13 12 11 15 15 C 1.38121 * 120.06960 * 359.74379 * 14 13 12 16 16 C 1.38860 * 119.92669 * 0.50459 * 15 14 13 17 17 O 1.35759 * 120.06858 * 179.76814 * 16 15 14 18 18 C 1.34825 * 116.99907 * 5.24185 * 17 16 15 19 19 H 1.08006 * 120.00067 * 354.92305 * 18 17 16 20 20 C 1.38655 * 119.99919 * 174.91789 * 18 17 16 21 21 N 1.31560 * 120.00001 * 179.72425 * 20 18 17 22 22 Si 1.86797 * 120.00168 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47101 * 89.99493 * 22 20 18 24 24 H 1.48493 * 109.47255 * 210.00106 * 22 20 18 25 25 H 1.48502 * 109.47087 * 330.00222 * 22 20 18 26 26 C 1.38081 * 119.96284 * 89.99703 * 12 11 10 27 27 H 1.08995 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46683 * 300.00053 * 1 2 3 29 29 H 1.08995 * 109.46828 * 59.99982 * 1 2 3 30 30 H 1.08998 * 109.46846 * 239.99612 * 2 1 3 31 31 H 1.09008 * 109.47113 * 120.00033 * 2 1 3 32 32 H 1.09001 * 110.37505 * 261.51886 * 5 3 2 33 33 H 1.09001 * 110.36834 * 23.74361 * 5 3 2 34 34 H 1.09004 * 110.37444 * 281.68013 * 7 6 5 35 35 H 1.09001 * 110.37705 * 159.34155 * 7 6 5 36 36 H 1.00897 * 111.00137 * 326.41120 * 10 8 7 37 37 H 1.09009 * 109.46665 * 59.99982 * 11 10 8 38 38 H 1.09002 * 109.47091 * 300.00378 * 11 10 8 39 39 H 1.08007 * 119.93043 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.97183 * 179.97438 * 14 13 12 41 41 H 1.08003 * 120.04339 * 180.25311 * 15 14 13 42 42 H 0.97000 * 119.99688 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.03503 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5795 2.0093 -0.8092 5 6 1.7618 2.1182 1.3610 6 8 2.9175 2.9497 1.6033 7 6 4.0495 2.1625 1.1736 8 6 3.5798 1.4723 -0.1262 9 1 3.9775 0.4594 -0.1886 10 7 3.9848 2.2561 -1.3006 11 6 5.3068 1.8355 -1.7839 12 6 5.6875 2.6595 -2.9869 13 6 5.3432 2.2297 -4.2557 14 6 5.6912 2.9826 -5.3621 15 6 6.3794 4.1695 -5.2028 16 6 6.7310 4.6011 -3.9307 17 8 7.4116 5.7649 -3.7711 18 6 7.6206 6.5082 -4.8764 19 1 7.3251 6.1313 -5.8445 20 6 8.2150 7.7564 -4.7703 21 7 8.4239 8.4794 -5.8494 22 14 8.7266 8.4080 -3.0961 23 1 10.1234 7.9934 -2.8093 24 1 8.6399 9.8904 -3.0942 25 1 7.8232 7.8580 -2.0536 26 6 6.3799 3.8426 -2.8213 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 0.8604 2.7284 1.3044 33 1 1.6620 1.3667 2.1443 34 1 4.3025 1.4180 1.9285 35 1 4.9056 2.8068 0.9730 36 1 3.9717 3.2444 -1.0978 37 1 5.2738 0.7819 -2.0613 38 1 6.0451 1.9807 -0.9952 39 1 4.8022 1.3036 -4.3827 40 1 5.4214 2.6443 -6.3516 41 1 6.6474 4.7593 -6.0669 42 1 8.8400 9.3524 -5.7751 43 1 6.6490 4.1774 -1.8304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699533705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:07 Heat of formation + Delta-G solvation = -74.524195 kcal Electronic energy + Delta-G solvation = -22752.142092 eV Core-core repulsion = 19375.754520 eV Total energy + Delta-G solvation = -3376.387572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03458 -40.69590 -38.63327 -36.32231 -35.32273 -34.45917 -32.40567 -31.01734 -29.62973 -28.85241 -27.28438 -25.80762 -24.76032 -23.28177 -22.43914 -22.15377 -21.14566 -19.65231 -18.91904 -17.39172 -17.16589 -16.84973 -16.58746 -16.46688 -15.87122 -15.76335 -15.51665 -15.47685 -15.13161 -14.65009 -14.43788 -14.33321 -14.16834 -13.81234 -13.48369 -13.29811 -13.05993 -12.85691 -12.72879 -12.46790 -12.40222 -12.22211 -12.13169 -11.96178 -11.75842 -11.61100 -11.40875 -11.27704 -10.92089 -10.86779 -9.75990 -9.29701 -9.06611 -8.50937 -6.23687 0.48134 0.70210 1.29778 1.34265 1.49958 2.26688 2.72285 2.93161 3.02541 3.15056 3.34461 3.65134 3.83403 3.95486 4.02266 4.08976 4.17500 4.29233 4.33895 4.40541 4.47935 4.55472 4.56647 4.60176 4.64332 4.68704 4.74240 4.77437 4.92318 4.96973 4.97880 5.15525 5.24445 5.25831 5.37839 5.39498 5.49919 5.67178 5.73969 5.75838 5.78504 5.91386 6.12628 6.26152 6.31032 6.83598 7.58537 8.60897 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.003303 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.952589 B = 8476.172708 C = 9365.296546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.109 4.109 4 H 0.080 0.920 5 C 0.045 3.955 6 O -0.402 6.402 7 C 0.012 3.988 8 C 0.061 3.939 9 H 0.110 0.890 10 N -0.678 5.678 11 C 0.110 3.890 12 C -0.040 4.040 13 C -0.160 4.160 14 C -0.078 4.078 15 C -0.239 4.239 16 C 0.119 3.881 17 O -0.247 6.247 18 C -0.399 4.399 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.267 1.267 25 H -0.264 1.264 26 C -0.185 4.185 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.341 0.659 37 H 0.102 0.898 38 H 0.045 0.955 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.106 0.894 42 H 0.285 0.715 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.097 -19.733 14.368 27.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.128 4.128 4 H 0.098 0.902 5 C -0.032 4.032 6 O -0.322 6.322 7 C -0.066 4.066 8 C -0.049 4.049 9 H 0.128 0.872 10 N -0.308 5.308 11 C -0.018 4.018 12 C -0.041 4.041 13 C -0.178 4.178 14 C -0.096 4.096 15 C -0.258 4.258 16 C 0.070 3.930 17 O -0.155 6.155 18 C -0.475 4.475 19 H 0.098 0.902 20 C -0.188 4.188 21 N -0.565 5.565 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.192 1.192 25 H -0.189 1.189 26 C -0.204 4.204 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.159 0.841 37 H 0.120 0.880 38 H 0.063 0.937 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.264 -19.636 14.118 27.583 hybrid contribution 1.073 1.279 0.330 1.702 sum -12.192 -18.357 14.448 26.351 Atomic orbital electron populations 1.21792 0.95257 1.02168 1.01868 1.21494 0.96343 0.93863 1.02709 1.22593 0.94336 0.98124 0.97748 0.90183 1.23698 0.89184 0.94270 0.96037 1.89132 1.16769 1.40701 1.85581 1.24267 0.89870 0.95542 0.96927 1.23117 0.95726 0.98481 0.87587 0.87164 1.60611 1.27540 1.09042 1.33620 1.20887 0.89452 0.98905 0.92584 1.19608 0.95405 0.93161 0.95921 1.20988 1.03893 1.01852 0.91103 1.21144 0.95593 0.92670 1.00170 1.21335 1.07388 1.00513 0.96563 1.19601 0.91903 0.86656 0.94840 1.83510 1.66816 1.29881 1.35276 1.20707 1.41461 0.99566 0.85758 0.90194 1.25272 0.96227 0.94827 1.02520 1.69731 1.43682 1.13024 1.30095 0.85217 0.79306 0.77629 0.78567 1.18983 1.19206 1.18886 1.20301 1.06629 0.97264 0.96233 0.91878 0.92396 0.93166 0.91370 0.90872 0.89014 0.90758 0.90307 0.90057 0.84094 0.87957 0.93668 0.83549 0.84267 0.87592 0.90579 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.79 71.98 0.70 -0.87 16 2 C -0.11 -1.17 5.15 30.60 0.16 -1.01 16 3 C -0.11 -1.64 2.89 -9.78 -0.03 -1.67 16 4 H 0.08 1.51 7.97 -2.38 -0.02 1.49 16 5 C 0.04 0.71 6.52 72.49 0.47 1.18 16 6 O -0.40 -9.05 11.65 -148.98 -1.74 -10.78 16 7 C 0.01 0.22 7.08 72.49 0.51 0.73 16 8 C 0.06 0.99 3.09 45.93 0.14 1.14 16 9 H 0.11 1.41 7.41 -2.39 -0.02 1.39 16 10 N -0.68 -14.45 6.19 -490.32 -3.04 -17.49 16 11 C 0.11 2.37 5.67 85.56 0.49 2.85 16 12 C -0.04 -1.22 5.39 -19.88 -0.11 -1.33 16 13 C -0.16 -4.73 9.70 22.30 0.22 -4.51 16 14 C -0.08 -2.69 10.04 22.25 0.22 -2.47 16 15 C -0.24 -10.65 9.17 22.39 0.21 -10.44 16 16 C 0.12 5.64 6.65 22.58 0.15 5.79 16 17 O -0.25 -13.67 8.59 -22.79 -0.20 -13.87 16 18 C -0.40 -23.92 9.95 67.92 0.68 -23.25 16 19 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 20 C 0.01 0.57 5.49 84.83 0.47 1.04 16 21 N -0.92 -56.04 13.96 21.61 0.30 -55.74 16 22 Si 0.97 46.27 28.62 68.60 1.96 48.23 16 23 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 26 C -0.18 -7.09 9.65 22.39 0.22 -6.88 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.54 7.63 -2.38 -0.02 0.53 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.64 7.97 -2.38 -0.02 0.63 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.07 0.93 7.75 -2.39 -0.02 0.91 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.58 8.02 -2.39 -0.02 1.56 16 36 H 0.34 8.54 8.41 -89.70 -0.75 7.79 16 37 H 0.10 1.77 8.02 -2.38 -0.02 1.76 16 38 H 0.05 0.92 8.09 -2.39 -0.02 0.90 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 41 H 0.11 5.22 5.64 -2.91 -0.02 5.20 16 42 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 43 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -67.84 352.09 2.04 -65.80 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.25 Total: 23.54 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.49 Total: -39.70 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -2.74 Total: -73.22 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -1.93 Total: -24.65 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.96 Total: 48.23 kcal Total: -67.84 2.04 -65.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699533705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.720 kcal (2) G-P(sol) polarization free energy of solvation -67.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds