Wall clock time and date at job start Tue Mar 31 2020 07:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47123 * 2 1 4 4 H 1.09002 * 110.45869 * 52.39559 * 3 2 1 5 5 C 1.54479 * 110.51447 * 289.63998 * 3 2 1 6 6 O 1.44421 * 104.80510 * 265.33681 * 5 3 2 7 7 C 1.44652 * 105.36644 * 319.56384 * 6 5 3 8 8 C 1.54473 * 104.69560 * 40.34698 * 7 6 5 9 9 H 1.09005 * 110.51363 * 94.90582 * 8 7 6 10 10 N 1.46897 * 110.51180 * 217.47599 * 8 7 6 11 11 C 1.46908 * 110.99890 * 271.69887 * 10 8 7 12 12 C 1.50706 * 109.47176 * 179.97438 * 11 10 8 13 13 C 1.38304 * 119.92913 * 89.99359 * 12 11 10 14 14 C 1.38102 * 120.06280 * 179.97438 * 13 12 11 15 15 C 1.38870 * 119.93375 * 0.03101 * 14 13 12 16 16 O 1.35756 * 120.06978 * 180.02562 * 15 14 13 17 17 C 1.34833 * 117.00056 * 174.44094 * 16 15 14 18 18 H 1.08005 * 119.99782 * 5.04999 * 17 16 15 19 19 C 1.38655 * 119.99833 * 185.05686 * 17 16 15 20 20 N 1.31554 * 119.99668 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00030 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47002 * 90.00456 * 21 19 17 23 23 H 1.48496 * 109.46814 * 210.00544 * 21 19 17 24 24 H 1.48499 * 109.46911 * 330.00354 * 21 19 17 25 25 C 1.38880 * 119.86406 * 359.96796 * 15 14 13 26 26 C 1.38100 * 119.93209 * 0.02562 * 25 15 14 27 27 H 1.09001 * 109.46763 * 59.99760 * 1 2 3 28 28 H 1.08993 * 109.47483 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47430 * 300.00147 * 1 2 3 30 30 H 1.08995 * 109.47034 * 240.00105 * 2 1 3 31 31 H 1.09001 * 109.46763 * 120.00240 * 2 1 3 32 32 H 1.09001 * 110.37098 * 24.16675 * 5 3 2 33 33 H 1.09003 * 110.37333 * 146.50093 * 5 3 2 34 34 H 1.09002 * 110.33829 * 281.59012 * 7 6 5 35 35 H 1.08999 * 110.50433 * 159.18883 * 7 6 5 36 36 H 1.00898 * 111.00830 * 147.74453 * 10 8 7 37 37 H 1.08998 * 109.47198 * 59.99374 * 11 10 8 38 38 H 1.09007 * 109.46614 * 299.99457 * 11 10 8 39 39 H 1.07998 * 119.96956 * 359.70266 * 13 12 11 40 40 H 1.07999 * 120.03245 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99721 * 180.02562 * 20 19 17 42 42 H 1.08006 * 120.03798 * 180.02562 * 25 15 14 43 43 H 1.07994 * 119.96908 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 2.0094 0.8091 5 6 1.7620 2.1150 -1.3626 6 8 2.9793 1.9345 -2.1185 7 6 4.0529 2.1574 -1.1750 8 6 3.5797 1.4724 0.1262 9 1 3.9773 0.4595 0.1910 10 7 3.9848 2.2589 1.2988 11 6 5.3258 1.8702 1.7557 12 6 5.7066 2.6970 2.9568 13 6 5.3958 2.2506 4.2284 14 6 5.7439 3.0058 5.3310 15 6 6.4060 4.2147 5.1619 16 8 6.7499 4.9590 6.2439 17 6 7.4907 6.0626 6.0173 18 1 7.7144 6.3643 5.0047 19 6 7.9652 6.8101 7.0844 20 7 8.6875 7.8872 6.8633 21 14 7.5777 6.2886 8.8357 22 1 8.6396 5.3737 9.3262 23 1 7.5171 7.4891 9.7077 24 1 6.2685 5.5886 8.8655 25 6 6.7167 4.6602 3.8838 26 6 6.3661 3.9005 2.7851 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.9277 1.6249 -1.8644 33 1 1.5536 3.1762 -1.2266 34 1 4.1973 3.2253 -1.0108 35 1 4.9755 1.6992 -1.5312 36 1 3.3098 2.1718 2.0436 37 1 6.0458 2.0400 0.9551 38 1 5.3255 0.8143 2.0263 39 1 4.8766 1.3127 4.3590 40 1 5.5006 2.6569 6.3237 41 1 9.0198 8.4099 7.6097 42 1 7.2319 5.5998 3.7490 43 1 6.6070 4.2465 1.7908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699534829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:16 Heat of formation + Delta-G solvation = -54.717360 kcal Electronic energy + Delta-G solvation = -22527.582557 eV Core-core repulsion = 19152.053873 eV Total energy + Delta-G solvation = -3375.528683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.03295 -39.20095 -37.14396 -35.36425 -34.43481 -32.42358 -30.72055 -30.26408 -28.64831 -27.92030 -25.61446 -24.40660 -23.95869 -22.11653 -21.29619 -20.77432 -20.16287 -17.90833 -17.29719 -16.61992 -16.51552 -15.73511 -15.26842 -14.90970 -14.76272 -14.31233 -14.10501 -14.08435 -13.79265 -13.60894 -13.53531 -13.01639 -12.79892 -12.58532 -12.31782 -12.10668 -12.02935 -11.91572 -11.73420 -11.34917 -11.06620 -10.99901 -10.86447 -10.75044 -10.70412 -10.64166 -10.16549 -9.91399 -9.40672 -8.89267 -8.51805 -8.27859 -7.35672 -6.43693 -4.10393 2.10321 2.14706 3.20270 3.23924 3.38388 3.74131 4.07067 4.19600 4.21680 4.46647 4.58169 4.62545 4.82926 4.88866 4.95240 5.07807 5.08440 5.16205 5.21120 5.25576 5.33824 5.39557 5.50604 5.60334 5.63147 5.64906 5.67169 5.69634 5.78445 5.79790 5.85584 5.95600 6.11371 6.31392 6.53397 6.54567 6.76706 6.92950 7.03707 7.19036 7.29931 7.34168 7.58906 7.78257 8.01637 8.91449 9.53539 10.63919 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.002719 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.129129 B =10296.220231 C =10718.928850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.125 4.125 4 H 0.091 0.909 5 C 0.052 3.948 6 O -0.379 6.379 7 C 0.053 3.947 8 C 0.056 3.944 9 H 0.058 0.942 10 N -0.675 5.675 11 C 0.116 3.884 12 C -0.178 4.178 13 C -0.071 4.071 14 C -0.194 4.194 15 C 0.162 3.838 16 O -0.217 6.217 17 C -0.390 4.390 18 H 0.107 0.893 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.222 4.222 26 C -0.050 4.050 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.345 0.655 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.280 0.720 42 H 0.133 0.867 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 -14.551 -12.881 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.144 4.144 4 H 0.109 0.891 5 C -0.024 4.024 6 O -0.297 6.297 7 C -0.025 4.025 8 C -0.055 4.055 9 H 0.076 0.924 10 N -0.308 5.308 11 C -0.012 4.012 12 C -0.179 4.179 13 C -0.089 4.089 14 C -0.213 4.213 15 C 0.110 3.890 16 O -0.122 6.122 17 C -0.465 4.465 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.517 5.517 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.241 4.241 26 C -0.068 4.068 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.164 0.836 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.150 0.850 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.444 -13.904 -13.145 22.824 hybrid contribution -0.156 -0.730 1.404 1.590 sum -12.600 -14.634 -11.741 22.600 Atomic orbital electron populations 1.21822 0.95527 1.01791 1.01984 1.21567 0.96093 0.95341 1.02319 1.22760 0.95038 0.97343 0.99280 0.89096 1.23433 0.88447 0.99791 0.90774 1.89132 1.15258 1.91973 1.33373 1.23541 0.90593 1.01022 0.87298 1.22986 0.94005 0.95839 0.92642 0.92412 1.60646 1.04291 1.57159 1.08674 1.20711 0.89967 0.95341 0.95202 1.19158 1.07545 0.98118 0.93112 1.20471 0.98595 0.98196 0.91672 1.20156 1.07418 0.94906 0.98813 1.19141 0.92825 0.90126 0.86957 1.83570 1.62885 1.35671 1.30074 1.20780 1.29073 0.99914 0.96772 0.87579 1.24472 0.95057 0.94813 0.99661 1.69646 1.33501 1.15292 1.33222 0.86178 0.80141 0.78237 0.82325 1.19887 1.20763 1.18376 1.21294 1.07964 1.02921 0.91958 1.20628 0.95604 0.93039 0.97573 0.92539 0.92611 0.92533 0.91472 0.91864 0.89189 0.92063 0.90776 0.89520 0.83558 0.90996 0.95169 0.87355 0.86634 0.91021 0.84955 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.78 37.16 0.36 -0.60 16 2 C -0.12 -0.84 5.17 -26.73 -0.14 -0.98 16 3 C -0.13 -1.05 2.79 -89.05 -0.25 -1.30 16 4 H 0.09 0.76 7.58 -51.93 -0.39 0.37 16 5 C 0.05 0.47 7.04 37.93 0.27 0.74 16 6 O -0.38 -4.33 11.65 -35.23 -0.41 -4.74 16 7 C 0.05 0.56 7.35 37.93 0.28 0.83 16 8 C 0.06 0.54 3.08 -66.15 -0.20 0.34 16 9 H 0.06 0.56 7.44 -51.93 -0.39 0.17 16 10 N -0.67 -7.59 6.28 -106.33 -0.67 -8.26 16 11 C 0.12 1.42 5.66 -4.97 -0.03 1.39 16 12 C -0.18 -2.80 5.40 -104.57 -0.56 -3.37 16 13 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 14 C -0.19 -3.74 9.99 -39.40 -0.39 -4.13 16 15 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 16 O -0.22 -5.69 8.59 0.02 0.00 -5.69 16 17 C -0.39 -10.94 9.95 30.89 0.31 -10.63 16 18 H 0.11 3.04 5.44 -52.48 -0.29 2.76 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -25.31 13.96 55.48 0.77 -24.54 16 21 Si 0.91 21.55 28.62 -169.99 -4.86 16.69 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.22 -4.73 9.17 -39.39 -0.36 -5.10 16 26 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 27 H 0.06 0.33 6.73 -51.93 -0.35 -0.02 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.68 6.48 -51.93 -0.34 0.35 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.34 3.79 8.11 -39.29 -0.32 3.47 16 37 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.03 0.34 8.02 -51.92 -0.42 -0.07 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 41 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.13 2.99 5.64 -52.48 -0.30 2.69 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -29.15 350.22 -8.30 -37.45 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.56 Total: 4.29 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -1.84 Total: -20.48 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.11 Total: -32.80 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.41 Total: -10.43 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.15 -8.30 -37.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699534829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.269 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds