Wall clock time and date at job start Tue Mar 31 2020 07:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47123 * 2 1 4 4 H 1.09002 * 110.45869 * 52.39559 * 3 2 1 5 5 C 1.54479 * 110.51447 * 289.63998 * 3 2 1 6 6 O 1.44421 * 104.80510 * 265.33681 * 5 3 2 7 7 C 1.44652 * 105.36644 * 319.56384 * 6 5 3 8 8 C 1.54473 * 104.69560 * 40.34698 * 7 6 5 9 9 H 1.09005 * 110.51363 * 94.90582 * 8 7 6 10 10 N 1.46897 * 110.51180 * 217.47599 * 8 7 6 11 11 C 1.46908 * 110.99890 * 271.69887 * 10 8 7 12 12 C 1.50706 * 109.47176 * 179.97438 * 11 10 8 13 13 C 1.38304 * 119.92913 * 89.99359 * 12 11 10 14 14 C 1.38102 * 120.06280 * 179.97438 * 13 12 11 15 15 C 1.38870 * 119.93375 * 0.03101 * 14 13 12 16 16 O 1.35756 * 120.06978 * 180.02562 * 15 14 13 17 17 C 1.34833 * 117.00056 * 174.44094 * 16 15 14 18 18 H 1.08005 * 119.99782 * 5.04999 * 17 16 15 19 19 C 1.38655 * 119.99833 * 185.05686 * 17 16 15 20 20 N 1.31554 * 119.99668 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00030 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47002 * 90.00456 * 21 19 17 23 23 H 1.48496 * 109.46814 * 210.00544 * 21 19 17 24 24 H 1.48499 * 109.46911 * 330.00354 * 21 19 17 25 25 C 1.38880 * 119.86406 * 359.96796 * 15 14 13 26 26 C 1.38100 * 119.93209 * 0.02562 * 25 15 14 27 27 H 1.09001 * 109.46763 * 59.99760 * 1 2 3 28 28 H 1.08993 * 109.47483 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47430 * 300.00147 * 1 2 3 30 30 H 1.08995 * 109.47034 * 240.00105 * 2 1 3 31 31 H 1.09001 * 109.46763 * 120.00240 * 2 1 3 32 32 H 1.09001 * 110.37098 * 24.16675 * 5 3 2 33 33 H 1.09003 * 110.37333 * 146.50093 * 5 3 2 34 34 H 1.09002 * 110.33829 * 281.59012 * 7 6 5 35 35 H 1.08999 * 110.50433 * 159.18883 * 7 6 5 36 36 H 1.00898 * 111.00830 * 147.74453 * 10 8 7 37 37 H 1.08998 * 109.47198 * 59.99374 * 11 10 8 38 38 H 1.09007 * 109.46614 * 299.99457 * 11 10 8 39 39 H 1.07998 * 119.96956 * 359.70266 * 13 12 11 40 40 H 1.07999 * 120.03245 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99721 * 180.02562 * 20 19 17 42 42 H 1.08006 * 120.03798 * 180.02562 * 25 15 14 43 43 H 1.07994 * 119.96908 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 2.0094 0.8091 5 6 1.7620 2.1150 -1.3626 6 8 2.9793 1.9345 -2.1185 7 6 4.0529 2.1574 -1.1750 8 6 3.5797 1.4724 0.1262 9 1 3.9773 0.4595 0.1910 10 7 3.9848 2.2589 1.2988 11 6 5.3258 1.8702 1.7557 12 6 5.7066 2.6970 2.9568 13 6 5.3958 2.2506 4.2284 14 6 5.7439 3.0058 5.3310 15 6 6.4060 4.2147 5.1619 16 8 6.7499 4.9590 6.2439 17 6 7.4907 6.0626 6.0173 18 1 7.7144 6.3643 5.0047 19 6 7.9652 6.8101 7.0844 20 7 8.6875 7.8872 6.8633 21 14 7.5777 6.2886 8.8357 22 1 8.6396 5.3737 9.3262 23 1 7.5171 7.4891 9.7077 24 1 6.2685 5.5886 8.8655 25 6 6.7167 4.6602 3.8838 26 6 6.3661 3.9005 2.7851 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.9277 1.6249 -1.8644 33 1 1.5536 3.1762 -1.2266 34 1 4.1973 3.2253 -1.0108 35 1 4.9755 1.6992 -1.5312 36 1 3.3098 2.1718 2.0436 37 1 6.0458 2.0400 0.9551 38 1 5.3255 0.8143 2.0263 39 1 4.8766 1.3127 4.3590 40 1 5.5006 2.6569 6.3237 41 1 9.0198 8.4099 7.6097 42 1 7.2319 5.5998 3.7490 43 1 6.6070 4.2465 1.7908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699534829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:15 Heat of formation + Delta-G solvation = -73.306602 kcal Electronic energy + Delta-G solvation = -22528.388647 eV Core-core repulsion = 19152.053873 eV Total energy + Delta-G solvation = -3376.334773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98570 -40.66718 -38.67710 -36.37960 -35.16199 -34.43841 -31.94884 -31.75216 -29.49669 -28.87306 -27.40223 -25.35424 -24.95216 -23.68170 -22.19092 -21.87067 -21.10859 -19.80412 -19.09087 -17.39697 -17.34273 -16.76067 -16.59213 -16.17008 -15.79670 -15.68249 -15.61937 -15.41180 -15.02975 -14.78253 -14.42176 -14.31495 -14.15851 -14.07286 -13.54131 -13.23573 -13.11999 -12.88962 -12.56601 -12.53536 -12.43227 -12.37675 -12.08546 -11.85042 -11.73523 -11.61022 -11.41956 -11.27170 -10.90239 -10.69994 -9.79272 -9.39852 -8.98359 -8.50306 -6.23053 0.58436 0.62623 1.31242 1.35431 1.51896 2.27847 2.71134 2.95489 3.08019 3.16238 3.42033 3.48054 3.85475 3.92721 4.04085 4.07738 4.18361 4.23599 4.31946 4.41160 4.50475 4.56311 4.59902 4.63342 4.68726 4.76031 4.83552 4.87219 4.90906 4.93725 4.99334 5.07507 5.17527 5.26471 5.30565 5.39136 5.44280 5.56916 5.76346 5.76656 5.82736 5.91598 6.12176 6.26583 6.45189 6.84030 7.58594 8.61474 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.002719 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.129129 B =10296.220231 C =10718.928850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.119 4.119 4 H 0.093 0.907 5 C 0.048 3.952 6 O -0.397 6.397 7 C 0.050 3.950 8 C 0.062 3.938 9 H 0.068 0.932 10 N -0.682 5.682 11 C 0.120 3.880 12 C -0.149 4.149 13 C -0.060 4.060 14 C -0.192 4.192 15 C 0.120 3.880 16 O -0.245 6.245 17 C -0.399 4.399 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.973 3.027 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.262 1.262 25 C -0.240 4.240 26 C -0.054 4.054 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.349 0.651 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.154 0.846 40 H 0.128 0.872 41 H 0.285 0.715 42 H 0.104 0.896 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.703 -17.820 -13.370 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.138 4.138 4 H 0.111 0.889 5 C -0.029 4.029 6 O -0.316 6.316 7 C -0.028 4.028 8 C -0.048 4.048 9 H 0.085 0.915 10 N -0.316 5.316 11 C -0.008 4.008 12 C -0.150 4.150 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.071 3.929 16 O -0.153 6.153 17 C -0.476 4.476 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.186 1.186 25 C -0.259 4.259 26 C -0.073 4.073 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.169 0.831 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.172 0.828 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.399 -17.206 -13.672 26.273 hybrid contribution 0.308 0.071 1.219 1.260 sum -14.092 -17.134 -12.453 25.441 Atomic orbital electron populations 1.21819 0.94810 1.02268 1.02178 1.21527 0.96691 0.94330 1.02294 1.22725 0.94145 0.98123 0.98808 0.88864 1.23577 0.88119 0.99979 0.91217 1.89117 1.16174 1.92010 1.34319 1.23573 0.90934 1.00423 0.87829 1.22946 0.94846 0.95738 0.91311 0.91459 1.60532 1.03864 1.57951 1.09250 1.20703 0.90763 0.95713 0.93663 1.19640 1.03925 0.96701 0.94777 1.20958 0.97249 0.99075 0.90507 1.20508 1.06207 0.93616 1.00791 1.19708 0.94788 0.91645 0.86778 1.83511 1.64531 1.35838 1.31428 1.20704 1.29807 1.01092 0.95975 0.90314 1.25307 0.95046 0.94852 1.03765 1.69734 1.35470 1.16762 1.34576 0.85191 0.79721 0.78286 0.77343 1.19028 1.19239 1.18623 1.21280 1.08806 1.02733 0.93083 1.20878 0.95586 0.93584 0.97250 0.92304 0.92032 0.92417 0.91905 0.91431 0.87851 0.92368 0.92119 0.88736 0.83066 0.90335 0.92761 0.82802 0.85359 0.90573 0.87799 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.78 71.98 0.70 -0.77 16 2 C -0.11 -1.26 5.17 30.59 0.16 -1.10 16 3 C -0.12 -1.64 2.79 -9.78 -0.03 -1.67 16 4 H 0.09 1.27 7.58 -2.39 -0.02 1.25 16 5 C 0.05 0.76 7.04 72.48 0.51 1.27 16 6 O -0.40 -8.35 11.65 -148.98 -1.74 -10.09 16 7 C 0.05 0.94 7.35 72.48 0.53 1.47 16 8 C 0.06 0.99 3.08 45.93 0.14 1.13 16 9 H 0.07 1.00 7.44 -2.38 -0.02 0.98 16 10 N -0.68 -12.76 6.28 -490.31 -3.08 -15.84 16 11 C 0.12 2.40 5.66 85.56 0.48 2.88 16 12 C -0.15 -4.18 5.40 -19.83 -0.11 -4.29 16 13 C -0.06 -1.68 9.69 22.25 0.22 -1.47 16 14 C -0.19 -7.08 9.99 22.39 0.22 -6.85 16 15 C 0.12 5.58 6.65 22.58 0.15 5.73 16 16 O -0.25 -13.38 8.59 -22.83 -0.20 -13.58 16 17 C -0.40 -23.77 9.95 67.92 0.68 -23.09 16 18 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 19 C 0.01 0.49 5.49 84.83 0.47 0.96 16 20 N -0.92 -55.72 13.96 21.61 0.30 -55.42 16 21 Si 0.97 45.55 28.62 68.60 1.96 47.52 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 25 C -0.24 -10.59 9.17 22.39 0.21 -10.38 16 26 C -0.05 -1.87 9.69 22.25 0.22 -1.65 16 27 H 0.06 0.53 6.73 -2.39 -0.02 0.52 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 1.33 6.48 -2.39 -0.02 1.32 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.35 6.17 8.11 -89.70 -0.73 5.44 16 37 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.05 0.90 8.02 -2.38 -0.02 0.88 16 39 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 40 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.10 5.12 5.64 -2.91 -0.02 5.10 16 43 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -66.66 350.22 2.08 -64.58 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.28 Total: 20.67 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 4.55 Total: -37.85 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -2.78 Total: -71.26 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.93 Total: -23.66 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.96 Total: 47.52 kcal Total: -66.66 2.08 -64.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699534829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.723 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds