Wall clock time and date at job start Tue Mar 31 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47039 * 2 1 4 4 C 1.53002 * 109.47007 * 119.99726 * 2 1 3 5 5 O 1.42899 * 109.46886 * 64.99714 * 4 2 1 6 6 C 1.35655 * 116.99613 * 179.97438 * 5 4 2 7 7 C 1.38706 * 120.15185 * 359.97438 * 6 5 4 8 8 C 1.38057 * 120.08251 * 180.02562 * 7 6 5 9 9 C 1.38549 * 120.39257 * 0.02562 * 8 7 6 10 10 C 1.37785 * 120.29932 * 359.97438 * 9 8 7 11 11 C 1.39702 * 119.90922 * 0.02562 * 10 9 8 12 12 C 1.47533 * 120.19174 * 180.02562 * 11 10 9 13 13 O 1.21601 * 119.99803 * 130.87354 * 12 11 10 14 14 N 1.34769 * 120.00298 * 310.87251 * 12 11 10 15 15 C 1.46497 * 120.00126 * 4.41578 * 14 12 11 16 16 C 1.46500 * 120.00116 * 184.41527 * 14 12 11 17 17 C 1.50696 * 109.47331 * 90.00156 * 16 14 12 18 18 H 1.08005 * 119.99827 * 0.02562 * 17 16 14 19 19 C 1.37879 * 120.00148 * 179.97438 * 17 16 14 20 20 N 1.31504 * 120.00073 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99955 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46838 * 90.00186 * 21 19 17 23 23 H 1.48492 * 109.47154 * 209.99858 * 21 19 17 24 24 H 1.48499 * 109.46967 * 330.00717 * 21 19 17 25 25 H 1.09006 * 109.47079 * 300.00195 * 1 2 3 26 26 H 1.08997 * 109.46814 * 59.99833 * 1 2 3 27 27 H 1.08993 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47084 * 239.99670 * 2 1 3 29 29 H 1.09004 * 109.47208 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47228 * 299.99685 * 3 2 1 31 31 H 1.08994 * 109.47972 * 59.99907 * 3 2 1 32 32 H 1.09001 * 109.46992 * 305.00360 * 4 2 1 33 33 H 1.08998 * 109.47184 * 184.99817 * 4 2 1 34 34 H 1.08002 * 119.96061 * 0.02562 * 7 6 5 35 35 H 1.07998 * 119.80463 * 180.28158 * 8 7 6 36 36 H 1.08003 * 119.84954 * 179.97438 * 9 8 7 37 37 H 1.08002 * 120.04643 * 180.02562 * 10 9 8 38 38 H 1.09004 * 109.47221 * 93.01334 * 15 14 12 39 39 H 1.09000 * 109.47620 * 213.01818 * 15 14 12 40 40 H 1.09005 * 109.46932 * 333.02071 * 15 14 12 41 41 H 1.09009 * 109.47525 * 210.00167 * 16 14 12 42 42 H 1.09003 * 109.47133 * 330.00018 * 16 14 12 43 43 H 0.97003 * 120.00226 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6619 -2.0981 1.1921 6 6 2.0398 -2.8841 2.2311 7 6 2.7607 -2.3450 3.2864 8 6 3.1451 -3.1464 4.3428 9 6 2.8155 -4.4920 4.3580 10 6 2.0998 -5.0442 3.3181 11 6 1.7045 -4.2448 2.2427 12 6 0.9374 -4.8294 1.1262 13 8 -0.0757 -4.2838 0.7332 14 7 1.3596 -5.9681 0.5419 15 6 2.5246 -6.6775 1.0765 16 6 0.6536 -6.4965 -0.6279 17 6 1.2618 -5.9246 -1.8825 18 1 2.0916 -5.2365 -1.8151 19 6 0.7597 -6.2804 -3.1163 20 7 -0.2504 -7.1185 -3.1983 21 14 1.5132 -5.5708 -4.6714 22 1 2.6097 -6.4565 -5.1388 23 1 0.4722 -5.4731 -5.7258 24 1 2.0569 -4.2187 -4.3856 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 3.0218 -1.2970 3.2816 35 1 3.7024 -2.7210 5.1643 36 1 3.1210 -5.1110 5.1886 37 1 1.8447 -6.0935 3.3343 38 1 2.1941 -7.4351 1.7871 39 1 3.0648 -7.1564 0.2598 40 1 3.1817 -5.9688 1.5806 41 1 0.7405 -7.5830 -0.6447 42 1 -0.3986 -6.2170 -0.5742 43 1 -0.6039 -7.3685 -4.0663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731343386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:49 Heat of formation + Delta-G solvation = -76.088399 kcal Electronic energy + Delta-G solvation = -23774.667751 eV Core-core repulsion = 20398.212350 eV Total energy + Delta-G solvation = -3376.455401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60630 -40.12009 -38.49990 -36.63650 -36.15382 -34.78414 -32.40567 -30.93409 -29.66813 -28.11948 -27.58041 -27.44472 -25.62281 -23.77255 -23.05958 -21.30336 -20.53008 -18.99337 -18.70482 -18.02543 -17.51023 -17.06278 -16.91227 -16.30564 -15.94989 -15.75837 -15.36267 -15.29098 -14.90260 -14.46055 -14.23293 -14.01625 -13.81314 -13.61654 -13.46066 -13.36678 -13.06748 -13.03098 -12.84914 -12.67020 -12.56548 -12.25647 -12.23986 -12.14698 -12.06370 -11.75901 -11.63873 -11.58416 -10.68467 -10.66971 -9.92017 -9.47204 -9.16614 -8.25352 -6.40412 0.07576 0.45647 1.31589 1.35489 1.45982 1.86999 2.22410 2.31532 2.43549 2.83637 3.03333 3.64628 3.72699 3.80091 3.92921 4.05867 4.08721 4.22007 4.34765 4.42198 4.46359 4.49246 4.57851 4.59408 4.64809 4.73726 4.84501 4.89703 4.92020 4.96162 5.00443 5.15491 5.18055 5.26439 5.31900 5.36803 5.39618 5.50312 5.53053 5.81631 5.85761 6.03401 6.47403 6.66232 6.74373 7.24366 7.44810 8.81922 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.006056 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.345109 B = 4622.092521 C = 6475.278541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.133 4.133 4 C 0.057 3.943 5 O -0.332 6.332 6 C 0.149 3.851 7 C -0.216 4.216 8 C -0.051 4.051 9 C -0.156 4.156 10 C -0.055 4.055 11 C -0.190 4.190 12 C 0.547 3.453 13 O -0.590 6.590 14 N -0.605 5.605 15 C 0.078 3.922 16 C 0.261 3.739 17 C -0.544 4.544 18 H 0.046 0.954 19 C 0.009 3.991 20 N -0.927 5.927 21 Si 0.967 3.033 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.277 1.277 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.144 0.856 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.028 0.972 42 H -0.003 1.003 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.678 12.231 16.657 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.190 4.190 4 C -0.017 4.017 5 O -0.246 6.246 6 C 0.102 3.898 7 C -0.234 4.234 8 C -0.069 4.069 9 C -0.173 4.173 10 C -0.073 4.073 11 C -0.194 4.194 12 C 0.336 3.664 13 O -0.472 6.472 14 N -0.336 5.336 15 C -0.064 4.064 16 C 0.140 3.860 17 C -0.582 4.582 18 H 0.064 0.936 19 C -0.190 4.190 20 N -0.566 5.566 21 Si 0.791 3.209 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.174 0.826 35 H 0.188 0.812 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.933 12.342 16.125 23.062 hybrid contribution -0.325 -0.028 -1.376 1.414 sum 10.608 12.314 14.749 21.947 Atomic orbital electron populations 1.21773 0.95300 1.00604 1.02515 1.21179 0.96400 0.97632 0.96604 1.21709 1.01720 0.92140 1.03428 1.23207 1.00464 0.78114 0.99958 1.86240 1.73860 1.22545 1.41907 1.19323 0.93336 0.89179 0.87959 1.21492 1.04333 1.02487 0.95096 1.21579 0.95261 0.93214 0.96819 1.21392 1.00547 0.96208 0.99200 1.21420 0.94777 0.99675 0.91438 1.19392 1.08155 0.93101 0.98715 1.18780 0.84497 0.80310 0.82816 1.90693 1.27896 1.62082 1.66516 1.48066 1.31055 1.24379 1.30113 1.22061 0.87387 0.97277 0.99651 1.18765 0.91508 0.93464 0.82297 1.21641 1.17069 1.27399 0.92111 0.93568 1.25850 0.95287 0.95281 1.02541 1.70045 1.25711 1.34793 1.26079 0.85424 0.78538 0.78697 0.78215 1.18339 1.20155 1.20217 0.91168 0.91776 0.95855 0.92749 0.91163 0.91328 0.90724 0.90139 0.90103 0.82630 0.81214 0.81534 0.83876 0.90424 0.91625 0.89591 0.95363 0.98508 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 9.09 71.98 0.65 -3.59 16 2 C -0.10 -2.61 3.16 -10.79 -0.03 -2.64 16 3 C -0.13 -2.23 9.19 71.98 0.66 -1.57 16 4 C 0.06 1.47 4.12 71.98 0.30 1.77 16 5 O -0.33 -12.79 8.72 -80.94 -0.71 -13.49 16 6 C 0.15 5.09 6.68 22.85 0.15 5.24 16 7 C -0.22 -4.86 9.03 22.34 0.20 -4.66 16 8 C -0.05 -0.85 10.03 22.30 0.22 -0.62 16 9 C -0.16 -2.80 10.02 22.24 0.22 -2.58 16 10 C -0.05 -1.45 7.61 22.52 0.17 -1.27 16 11 C -0.19 -7.09 4.90 -20.01 -0.10 -7.18 16 12 C 0.55 27.15 6.95 86.70 0.60 27.75 16 13 O -0.59 -35.64 16.09 4.74 0.08 -35.56 16 14 N -0.61 -29.22 2.86 -854.92 -2.44 -31.66 16 15 C 0.08 2.70 9.09 127.77 1.16 3.86 16 16 C 0.26 15.29 5.21 85.63 0.45 15.73 16 17 C -0.54 -33.70 9.39 25.60 0.24 -33.45 16 18 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 19 C 0.01 0.57 5.46 84.66 0.46 1.04 16 20 N -0.93 -58.30 13.29 21.45 0.28 -58.01 16 21 Si 0.97 47.09 29.54 68.60 2.03 49.12 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 25 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.02 0.89 7.82 -2.39 -0.02 0.87 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.98 16 30 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.70 7.66 -2.39 -0.02 1.68 16 33 H 0.08 1.68 7.66 -2.39 -0.02 1.66 16 34 H 0.16 2.56 6.30 -2.91 -0.02 2.54 16 35 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 37 H 0.14 3.38 6.57 -2.91 -0.02 3.36 16 38 H 0.08 2.14 7.56 -2.38 -0.02 2.13 16 39 H 0.06 2.32 8.09 -2.39 -0.02 2.30 16 40 H 0.09 2.55 5.68 -2.38 -0.01 2.54 16 41 H 0.03 1.64 8.07 -2.38 -0.02 1.62 16 42 H 0.00 -0.22 7.36 -2.39 -0.02 -0.23 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -86.06 355.61 5.59 -80.47 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.98 Total: 11.32 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.36 Total: -2.18 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -2.16 Total: -89.67 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -0.63 Total: -49.05 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -86.06 5.59 -80.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731343386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.382 kcal (2) G-P(sol) polarization free energy of solvation -86.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds