Wall clock time and date at job start Tue Mar 31 2020 07:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46869 * 2 1 4 4 H 1.08998 * 109.51328 * 305.50754 * 3 2 1 5 5 C 1.53103 * 109.50650 * 65.64359 * 3 2 1 6 6 O 1.43017 * 109.25943 * 176.78311 * 5 3 2 7 7 C 1.43017 * 113.73465 * 301.32686 * 6 5 3 8 8 C 1.53092 * 109.26024 * 58.67213 * 7 6 5 9 9 N 1.47012 * 109.50722 * 185.42022 * 3 2 1 10 10 C 1.46908 * 111.00024 * 57.67226 * 9 3 2 11 11 C 1.50694 * 109.46725 * 58.73648 * 10 9 3 12 12 C 1.38304 * 119.93320 * 266.36830 * 11 10 9 13 13 C 1.38102 * 120.07039 * 179.72589 * 12 11 10 14 14 C 1.38881 * 119.92974 * 0.54646 * 13 12 11 15 15 O 1.35748 * 120.06899 * 179.74978 * 14 13 12 16 16 C 1.34827 * 116.99956 * 185.06931 * 15 14 13 17 17 H 1.08001 * 120.00206 * 354.88701 * 16 15 14 18 18 C 1.38658 * 120.00123 * 174.88316 * 16 15 14 19 19 N 1.31554 * 119.99847 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99975 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47211 * 60.00424 * 20 18 16 22 22 H 1.48504 * 109.47038 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47305 * 300.00111 * 20 18 16 24 24 C 1.38880 * 119.85965 * 359.72500 * 14 13 12 25 25 C 1.38100 * 119.93595 * 359.97438 * 24 14 13 26 26 H 1.09003 * 109.47522 * 303.77976 * 1 2 3 27 27 H 1.09002 * 109.47093 * 63.77249 * 1 2 3 28 28 H 1.08998 * 109.47051 * 183.77275 * 1 2 3 29 29 H 1.08996 * 109.47176 * 240.00254 * 2 1 3 30 30 H 1.09000 * 109.46690 * 119.99820 * 2 1 3 31 31 H 1.08993 * 109.50802 * 56.84647 * 5 3 2 32 32 H 1.09003 * 109.50187 * 296.71047 * 5 3 2 33 33 H 1.09000 * 109.50467 * 178.60267 * 7 6 5 34 34 H 1.09000 * 109.50806 * 298.68772 * 7 6 5 35 35 H 1.09001 * 109.51171 * 63.08655 * 8 7 6 36 36 H 1.08999 * 109.50896 * 183.21946 * 8 7 6 37 37 H 1.08993 * 109.47184 * 178.73719 * 10 9 3 38 38 H 1.09003 * 109.46969 * 298.74240 * 10 9 3 39 39 H 1.07995 * 119.96399 * 359.97438 * 12 11 10 40 40 H 1.07995 * 120.03480 * 180.26254 * 13 12 11 41 41 H 0.96998 * 120.00052 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.03301 * 179.97438 * 24 14 13 43 43 H 1.07992 * 119.96767 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5987 1.9847 -0.8363 5 6 1.6492 2.1229 1.3147 6 8 2.1924 3.4456 1.3410 7 6 3.6166 3.4857 1.2164 8 6 4.0273 2.8192 -0.0992 9 7 3.5042 1.4456 -0.1309 10 6 3.9249 0.7501 -1.3546 11 6 3.3059 1.4229 -2.5526 12 6 2.1073 0.9580 -3.0625 13 6 1.5347 1.5760 -4.1568 14 6 2.1695 2.6582 -4.7523 15 8 1.6118 3.2646 -5.8312 16 6 2.3294 4.2398 -6.4243 17 1 3.2637 4.5632 -5.9896 18 6 1.8681 4.8275 -7.5924 19 7 0.7298 4.4339 -8.1216 20 14 2.8620 6.1791 -8.4136 21 1 4.2019 5.6547 -8.7809 22 1 2.1576 6.6372 -9.6381 23 1 3.0170 7.3195 -7.4751 24 6 3.3759 3.1190 -4.2414 25 6 3.9403 2.5008 -3.1431 26 1 -0.3634 0.5714 0.8542 27 1 -0.3633 0.4542 -0.9219 28 1 -0.3633 -1.0254 0.0676 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0456 1.5499 2.1529 32 1 0.5629 2.1740 1.3891 33 1 3.9532 4.5224 1.2197 34 1 4.0702 2.9530 2.0522 35 1 3.6178 3.3839 -0.9368 36 1 5.1146 2.7963 -0.1718 37 1 5.0110 0.7866 -1.4382 38 1 3.5983 -0.2890 -1.3125 39 1 1.6165 0.1135 -2.6019 40 1 0.5966 1.2152 -4.5519 41 1 0.4069 4.8452 -8.9385 42 1 3.8722 3.9601 -4.7026 43 1 4.8782 2.8589 -2.7451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734489388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:21 Heat of formation + Delta-G solvation = -43.907774 kcal Electronic energy + Delta-G solvation = -23969.518170 eV Core-core repulsion = 20594.458225 eV Total energy + Delta-G solvation = -3375.059945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.22009 -38.84624 -37.06516 -35.45806 -33.95978 -32.32361 -30.33934 -30.21439 -29.39569 -27.07098 -25.45488 -24.84267 -23.73494 -22.01225 -21.61925 -20.85009 -19.47693 -18.06367 -16.99621 -16.48371 -16.34308 -15.42098 -15.13355 -14.72273 -14.62636 -14.55121 -14.47252 -13.90967 -13.52883 -13.50716 -13.27533 -12.92042 -12.71115 -12.66811 -12.18270 -11.81675 -11.70636 -11.49632 -11.39605 -11.23060 -11.08995 -10.88078 -10.81970 -10.73151 -10.58955 -10.47003 -10.27203 -9.53752 -9.36556 -8.86182 -8.24376 -8.21822 -7.22862 -6.48760 -4.07840 2.15582 2.22926 3.10724 3.11511 3.14556 3.83486 3.93399 3.95784 4.51931 4.76743 4.91380 4.98375 5.05783 5.14670 5.19765 5.23680 5.28125 5.36039 5.39329 5.47814 5.49277 5.57190 5.67551 5.70360 5.77409 5.83477 5.85356 5.97986 6.00976 6.12626 6.12992 6.21538 6.32006 6.35629 6.65724 6.84018 6.97238 7.03144 7.08354 7.16441 7.22365 7.34210 7.39554 7.77154 7.95869 8.96592 9.65939 10.69022 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.004025 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.349649 B = 6954.879787 C = 7412.799209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.044 3.956 4 H 0.065 0.935 5 C 0.069 3.931 6 O -0.386 6.386 7 C 0.065 3.935 8 C 0.011 3.989 9 N -0.525 5.525 10 C 0.105 3.895 11 C -0.223 4.223 12 C -0.064 4.064 13 C -0.194 4.194 14 C 0.157 3.843 15 O -0.176 6.176 16 C -0.393 4.393 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.235 4.235 25 C -0.060 4.060 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.271 0.729 42 H 0.126 0.874 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 -6.095 16.194 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.064 4.064 4 H 0.083 0.917 5 C -0.008 4.008 6 O -0.304 6.304 7 C -0.012 4.012 8 C -0.117 4.117 9 N -0.249 5.249 10 C -0.021 4.021 11 C -0.225 4.225 12 C -0.082 4.082 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.079 6.079 16 C -0.469 4.469 17 H 0.108 0.892 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.254 4.254 25 C -0.079 4.079 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.081 0.919 42 H 0.143 0.857 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.347 -6.146 16.302 17.957 hybrid contribution 0.422 0.949 -1.299 1.663 sum 4.770 -5.197 15.003 16.579 Atomic orbital electron populations 1.21832 0.95525 1.01686 1.02276 1.21610 0.95653 0.95515 1.02768 1.22326 0.88575 0.97047 0.98475 0.91686 1.22760 0.98721 0.83262 0.96054 1.87987 1.20875 1.27454 1.94106 1.22650 0.81464 1.00867 0.96254 1.22831 1.00477 0.89942 0.98433 1.62718 1.10008 1.15609 1.36528 1.20991 0.99101 0.97219 0.84831 1.19886 0.98945 1.01883 1.01815 1.20585 0.94646 0.98192 0.94819 1.20212 1.02513 0.98561 1.00051 1.19398 0.91104 0.91032 0.88223 1.83977 1.42134 1.45757 1.36062 1.21276 1.05415 1.13109 1.07133 0.89155 1.25292 0.96665 0.98741 0.95732 1.70025 1.18905 1.40777 1.19910 0.85782 0.79100 0.79862 0.78711 1.19482 1.20204 1.19469 1.21145 0.98831 1.04791 1.00645 1.20601 0.97927 0.94785 0.94594 0.92672 0.92223 0.92552 0.90904 0.91568 0.92813 0.88733 0.88833 0.92786 0.92462 0.90115 0.90890 0.90349 0.87075 0.86644 0.91909 0.85660 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.76 37.16 0.36 -1.16 16 2 C -0.12 -1.26 4.79 -26.73 -0.13 -1.39 16 3 C 0.04 0.57 1.45 -67.60 -0.10 0.47 16 4 H 0.07 1.04 6.38 -51.93 -0.33 0.71 16 5 C 0.07 0.83 5.98 37.21 0.22 1.06 16 6 O -0.39 -5.43 10.83 -35.23 -0.38 -5.81 16 7 C 0.06 0.76 7.01 37.21 0.26 1.02 16 8 C 0.01 0.15 4.92 -3.71 -0.02 0.13 16 9 N -0.53 -6.74 4.75 -227.77 -1.08 -7.82 16 10 C 0.11 1.40 5.17 -4.97 -0.03 1.37 16 11 C -0.22 -3.66 4.00 -104.57 -0.42 -4.08 16 12 C -0.06 -1.10 8.00 -39.61 -0.32 -1.42 16 13 C -0.19 -4.08 9.99 -39.39 -0.39 -4.47 16 14 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 15 O -0.18 -5.04 9.76 0.06 0.00 -5.04 16 16 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 20 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.23 -5.08 9.17 -39.39 -0.36 -5.44 16 25 C -0.06 -1.08 7.83 -39.61 -0.31 -1.39 16 26 H 0.05 0.49 6.49 -51.93 -0.34 0.16 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.82 4.24 -51.93 -0.22 0.60 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.03 6.67 -51.93 -0.35 0.69 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.88 6.12 -51.93 -0.32 0.56 16 36 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.08 0.96 6.14 -51.93 -0.32 0.64 16 39 H 0.11 1.64 5.94 -52.49 -0.31 1.33 16 40 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.13 2.73 5.63 -52.49 -0.30 2.44 16 43 H 0.10 1.61 7.79 -52.49 -0.41 1.20 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -30.50 331.63 -8.11 -38.61 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.10 Total: 5.57 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.29 Total: -21.48 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: -0.32 Total: -32.31 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.38 Total: -10.85 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.50 -8.11 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734489388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.296 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds