Wall clock time and date at job start Tue Mar 31 2020 07:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46869 * 2 1 4 4 H 1.08998 * 109.51328 * 305.50754 * 3 2 1 5 5 C 1.53103 * 109.50650 * 65.64359 * 3 2 1 6 6 O 1.43017 * 109.25943 * 176.78311 * 5 3 2 7 7 C 1.43017 * 113.73465 * 301.32686 * 6 5 3 8 8 C 1.53092 * 109.26024 * 58.67213 * 7 6 5 9 9 N 1.47012 * 109.50722 * 185.42022 * 3 2 1 10 10 C 1.46908 * 111.00024 * 57.67226 * 9 3 2 11 11 C 1.50694 * 109.46725 * 58.73648 * 10 9 3 12 12 C 1.38304 * 119.93320 * 266.36830 * 11 10 9 13 13 C 1.38102 * 120.07039 * 179.72589 * 12 11 10 14 14 C 1.38881 * 119.92974 * 0.54646 * 13 12 11 15 15 O 1.35748 * 120.06899 * 179.74978 * 14 13 12 16 16 C 1.34827 * 116.99956 * 185.06931 * 15 14 13 17 17 H 1.08001 * 120.00206 * 354.88701 * 16 15 14 18 18 C 1.38658 * 120.00123 * 174.88316 * 16 15 14 19 19 N 1.31554 * 119.99847 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99975 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47211 * 60.00424 * 20 18 16 22 22 H 1.48504 * 109.47038 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47305 * 300.00111 * 20 18 16 24 24 C 1.38880 * 119.85965 * 359.72500 * 14 13 12 25 25 C 1.38100 * 119.93595 * 359.97438 * 24 14 13 26 26 H 1.09003 * 109.47522 * 303.77976 * 1 2 3 27 27 H 1.09002 * 109.47093 * 63.77249 * 1 2 3 28 28 H 1.08998 * 109.47051 * 183.77275 * 1 2 3 29 29 H 1.08996 * 109.47176 * 240.00254 * 2 1 3 30 30 H 1.09000 * 109.46690 * 119.99820 * 2 1 3 31 31 H 1.08993 * 109.50802 * 56.84647 * 5 3 2 32 32 H 1.09003 * 109.50187 * 296.71047 * 5 3 2 33 33 H 1.09000 * 109.50467 * 178.60267 * 7 6 5 34 34 H 1.09000 * 109.50806 * 298.68772 * 7 6 5 35 35 H 1.09001 * 109.51171 * 63.08655 * 8 7 6 36 36 H 1.08999 * 109.50896 * 183.21946 * 8 7 6 37 37 H 1.08993 * 109.47184 * 178.73719 * 10 9 3 38 38 H 1.09003 * 109.46969 * 298.74240 * 10 9 3 39 39 H 1.07995 * 119.96399 * 359.97438 * 12 11 10 40 40 H 1.07995 * 120.03480 * 180.26254 * 13 12 11 41 41 H 0.96998 * 120.00052 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.03301 * 179.97438 * 24 14 13 43 43 H 1.07992 * 119.96767 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5987 1.9847 -0.8363 5 6 1.6492 2.1229 1.3147 6 8 2.1924 3.4456 1.3410 7 6 3.6166 3.4857 1.2164 8 6 4.0273 2.8192 -0.0992 9 7 3.5042 1.4456 -0.1309 10 6 3.9249 0.7501 -1.3546 11 6 3.3059 1.4229 -2.5526 12 6 2.1073 0.9580 -3.0625 13 6 1.5347 1.5760 -4.1568 14 6 2.1695 2.6582 -4.7523 15 8 1.6118 3.2646 -5.8312 16 6 2.3294 4.2398 -6.4243 17 1 3.2637 4.5632 -5.9896 18 6 1.8681 4.8275 -7.5924 19 7 0.7298 4.4339 -8.1216 20 14 2.8620 6.1791 -8.4136 21 1 4.2019 5.6547 -8.7809 22 1 2.1576 6.6372 -9.6381 23 1 3.0170 7.3195 -7.4751 24 6 3.3759 3.1190 -4.2414 25 6 3.9403 2.5008 -3.1431 26 1 -0.3634 0.5714 0.8542 27 1 -0.3633 0.4542 -0.9219 28 1 -0.3633 -1.0254 0.0676 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0456 1.5499 2.1529 32 1 0.5629 2.1740 1.3891 33 1 3.9532 4.5224 1.2197 34 1 4.0702 2.9530 2.0522 35 1 3.6178 3.3839 -0.9368 36 1 5.1146 2.7963 -0.1718 37 1 5.0110 0.7866 -1.4382 38 1 3.5983 -0.2890 -1.3125 39 1 1.6165 0.1135 -2.6019 40 1 0.5966 1.2152 -4.5519 41 1 0.4069 4.8452 -8.9385 42 1 3.8722 3.9601 -4.7026 43 1 4.8782 2.8589 -2.7451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734489388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:20 Heat of formation + Delta-G solvation = -64.559488 kcal Electronic energy + Delta-G solvation = -23970.413695 eV Core-core repulsion = 20594.458225 eV Total energy + Delta-G solvation = -3375.955470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43743 -40.41420 -38.55677 -36.71346 -34.96382 -34.28703 -31.84393 -31.63783 -30.40842 -28.37858 -27.32575 -25.80337 -24.95882 -23.59747 -22.58344 -22.32528 -20.59915 -19.90715 -18.84412 -17.51207 -17.37064 -16.54799 -16.50296 -16.21687 -16.13111 -15.92183 -15.61404 -15.52010 -15.07414 -14.68191 -14.60635 -14.25026 -13.99840 -13.87738 -13.60702 -13.26283 -12.98537 -12.70102 -12.60731 -12.57573 -12.43044 -12.28666 -12.17569 -12.09264 -11.76164 -11.61971 -11.31136 -11.17320 -10.81122 -10.50179 -9.81461 -9.37887 -8.94865 -8.50590 -6.19307 0.53667 0.62153 1.32088 1.42801 1.48599 2.14926 2.71132 2.90411 2.99769 3.15256 3.46788 3.80079 3.95333 3.96575 4.08737 4.09332 4.16099 4.23315 4.32523 4.38248 4.46891 4.51110 4.54965 4.60660 4.69440 4.75894 4.85458 4.87719 4.88515 4.96474 5.05354 5.09710 5.10525 5.22829 5.24887 5.32556 5.44404 5.52667 5.66160 5.69409 5.98461 6.02102 6.06620 6.17399 6.23666 6.93687 7.73812 8.72354 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.004025 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.349649 B = 6954.879787 C = 7412.799209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C 0.045 3.955 4 H 0.028 0.972 5 C 0.067 3.933 6 O -0.412 6.412 7 C 0.063 3.937 8 C 0.009 3.991 9 N -0.515 5.515 10 C 0.106 3.894 11 C -0.194 4.194 12 C -0.053 4.053 13 C -0.208 4.208 14 C 0.115 3.885 15 O -0.232 6.232 16 C -0.416 4.416 17 H 0.100 0.900 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.257 1.257 22 H -0.270 1.270 23 H -0.258 1.258 24 C -0.245 4.245 25 C -0.057 4.057 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.273 0.727 42 H 0.116 0.884 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -7.234 19.074 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.064 4.064 4 H 0.046 0.954 5 C -0.009 4.009 6 O -0.331 6.331 7 C -0.014 4.014 8 C -0.119 4.119 9 N -0.238 5.238 10 C -0.021 4.021 11 C -0.196 4.196 12 C -0.072 4.072 13 C -0.227 4.227 14 C 0.065 3.935 15 O -0.139 6.139 16 C -0.492 4.492 17 H 0.117 0.883 18 C -0.219 4.219 19 N -0.558 5.558 20 Si 0.837 3.163 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.182 1.182 24 C -0.265 4.265 25 C -0.076 4.076 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.162 0.838 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.677 -7.316 19.244 21.643 hybrid contribution -0.239 1.102 -1.840 2.158 sum 6.438 -6.215 17.404 19.569 Atomic orbital electron populations 1.21833 0.95090 1.02676 1.01688 1.21587 0.96011 0.93949 1.03430 1.22344 0.88349 0.98100 0.97626 0.95405 1.22868 0.99300 0.82703 0.96054 1.87961 1.22260 1.28685 1.94195 1.22796 0.80510 1.01882 0.96214 1.22911 1.01647 0.89414 0.97929 1.62780 1.09919 1.15637 1.35418 1.21176 1.00145 0.97821 0.82968 1.20450 0.97601 1.00078 1.01489 1.20946 0.94749 0.98329 0.93163 1.20461 1.02646 0.98338 1.01248 1.19943 0.92841 0.92516 0.88249 1.83939 1.43968 1.47513 1.38465 1.21763 1.05992 1.13596 1.07856 0.88295 1.26599 0.97865 1.01389 0.96070 1.70174 1.21353 1.43279 1.20968 0.84657 0.77625 0.76380 0.77613 1.18090 1.19438 1.18227 1.21244 0.98266 1.05010 1.01938 1.20950 0.98932 0.94566 0.93111 0.91884 0.94093 0.90969 0.91122 0.89831 0.91083 0.88139 0.87716 0.91016 0.95507 0.87902 0.88838 0.88358 0.83848 0.87218 0.91765 0.86618 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.76 71.98 0.70 -1.96 16 2 C -0.11 -2.01 4.79 30.59 0.15 -1.87 16 3 C 0.04 1.02 1.45 44.93 0.07 1.09 16 4 H 0.03 0.86 6.38 -2.39 -0.02 0.84 16 5 C 0.07 1.45 5.98 72.02 0.43 1.88 16 6 O -0.41 -10.78 10.83 -148.98 -1.61 -12.39 16 7 C 0.06 1.29 7.01 72.01 0.50 1.80 16 8 C 0.01 0.21 4.92 86.31 0.42 0.63 16 9 N -0.51 -11.23 4.75 -874.54 -4.15 -15.38 16 10 C 0.11 2.34 5.17 85.55 0.44 2.78 16 11 C -0.19 -5.89 4.00 -19.83 -0.08 -5.97 16 12 C -0.05 -1.79 8.00 22.25 0.18 -1.61 16 13 C -0.21 -9.02 9.99 22.39 0.22 -8.80 16 14 C 0.12 5.86 6.65 22.58 0.15 6.01 16 15 O -0.23 -14.29 9.76 -22.69 -0.22 -14.52 16 16 C -0.42 -24.67 9.49 67.92 0.64 -24.02 16 17 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 18 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 19 N -0.92 -57.10 13.67 21.61 0.30 -56.81 16 20 Si 1.02 43.28 29.55 68.60 2.03 45.31 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 C -0.25 -10.88 9.17 22.39 0.21 -10.67 16 25 C -0.06 -1.96 7.83 22.25 0.17 -1.78 16 26 H 0.06 0.98 6.49 -2.39 -0.02 0.96 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.29 4.24 -2.39 -0.01 1.28 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.99 6.67 -2.39 -0.02 1.98 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.03 0.77 6.12 -2.39 -0.01 0.75 16 36 H 0.10 1.84 8.13 -2.39 -0.02 1.82 16 37 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 38 H 0.10 1.89 6.14 -2.39 -0.01 1.87 16 39 H 0.14 3.86 5.94 -2.91 -0.02 3.84 16 40 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.12 5.25 5.63 -2.91 -0.02 5.24 16 43 H 0.14 3.79 7.79 -2.91 -0.02 3.77 16 Total: -1.00 -72.01 331.63 2.03 -69.98 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 1.01 Total: 27.08 kcal Atomic # 6 Polarization: -47.95 SS G_CDS: 4.68 Total: -43.28 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -3.85 Total: -72.18 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.83 Total: -26.90 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -72.01 2.03 -69.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734489388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.421 kcal (2) G-P(sol) polarization free energy of solvation -72.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds