Wall clock time and date at job start Tue Mar 31 2020 07:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46843 * 2 1 4 4 H 1.08999 * 109.50351 * 54.92523 * 3 2 1 5 5 C 1.53090 * 109.50832 * 294.78787 * 3 2 1 6 6 O 1.43023 * 109.26056 * 183.21721 * 5 3 2 7 7 C 1.43014 * 113.73627 * 58.66636 * 6 5 3 8 8 C 1.53098 * 109.26194 * 301.33451 * 7 6 5 9 9 N 1.47012 * 109.50545 * 175.00359 * 3 2 1 10 10 C 1.46901 * 111.00364 * 302.32986 * 9 3 2 11 11 C 1.50702 * 109.47297 * 184.39705 * 10 9 3 12 12 C 1.38306 * 119.93155 * 269.73027 * 11 10 9 13 13 C 1.38091 * 120.06418 * 179.72718 * 12 11 10 14 14 C 1.38878 * 119.93577 * 0.56305 * 13 12 11 15 15 O 1.35752 * 120.07048 * 179.68396 * 14 13 12 16 16 C 1.34831 * 116.99781 * 174.66806 * 15 14 13 17 17 H 1.08005 * 120.00067 * 5.49892 * 16 15 14 18 18 C 1.38656 * 120.00057 * 185.50240 * 16 15 14 19 19 N 1.31554 * 119.99875 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00055 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47189 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47037 * 120.00230 * 20 18 16 23 23 H 1.48498 * 109.47033 * 240.00012 * 20 18 16 24 24 C 1.38880 * 119.86012 * 359.71017 * 14 13 12 25 25 C 1.38105 * 119.92959 * 359.97438 * 24 14 13 26 26 H 1.09000 * 109.46745 * 304.31465 * 1 2 3 27 27 H 1.08999 * 109.47129 * 64.32014 * 1 2 3 28 28 H 1.08995 * 109.46576 * 184.31753 * 1 2 3 29 29 H 1.08995 * 109.47526 * 119.99977 * 2 1 3 30 30 H 1.09005 * 109.47178 * 240.00719 * 2 1 3 31 31 H 1.08998 * 109.51128 * 303.15266 * 5 3 2 32 32 H 1.09002 * 109.50603 * 63.28477 * 5 3 2 33 33 H 1.09000 * 109.50837 * 181.39802 * 7 6 5 34 34 H 1.09002 * 109.50347 * 61.26810 * 7 6 5 35 35 H 1.08999 * 109.50559 * 296.91575 * 8 7 6 36 36 H 1.08996 * 109.50752 * 176.78298 * 8 7 6 37 37 H 1.08994 * 109.47433 * 304.39975 * 10 9 3 38 38 H 1.08999 * 109.46657 * 64.40131 * 10 9 3 39 39 H 1.07999 * 119.96371 * 359.97388 * 12 11 10 40 40 H 1.08006 * 120.03279 * 180.27090 * 13 12 11 41 41 H 0.97003 * 120.00333 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.03917 * 179.97438 * 24 14 13 43 43 H 1.07995 * 119.96525 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6046 1.9825 0.8409 5 6 1.6400 2.1262 -1.3101 6 8 2.1830 3.4491 -1.3369 7 6 3.6080 3.4888 -1.2221 8 6 4.0280 2.8189 0.0889 9 7 3.5051 1.4453 0.1207 10 6 3.9343 0.7468 1.3397 11 6 5.4298 0.8630 1.4851 12 6 6.2541 -0.0977 0.9280 13 6 7.6250 0.0091 1.0548 14 6 8.1754 1.0762 1.7526 15 8 9.5225 1.1805 1.8844 16 6 9.9951 2.2957 2.4767 17 1 9.3091 3.0142 2.9006 18 6 11.3618 2.5204 2.5414 19 7 12.1974 1.6456 2.0245 20 14 12.0165 4.0660 3.3612 21 1 10.8798 4.8826 3.8573 22 1 12.8906 3.6893 4.5011 23 1 12.7996 4.8548 2.3766 24 6 7.3448 2.0363 2.3157 25 6 5.9748 1.9274 2.1799 26 1 -0.3633 0.5793 0.8488 27 1 -0.3633 0.4453 -0.9262 28 1 -0.3632 -1.0247 0.0774 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 2.0304 1.5554 -2.1526 32 1 0.5532 2.1775 -1.3768 33 1 3.9446 4.5256 -1.2252 34 1 4.0557 2.9576 -2.0620 35 1 3.6243 3.3815 0.9307 36 1 5.1157 2.7960 0.1537 37 1 3.4490 1.1962 2.2060 38 1 3.6565 -0.3051 1.2725 39 1 5.8253 -0.9301 0.3899 40 1 8.2684 -0.7392 0.6158 41 1 13.1535 1.8026 2.0701 42 1 7.7697 2.8672 2.8593 43 1 5.3283 2.6739 2.6172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734489389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:23 Heat of formation + Delta-G solvation = -45.797782 kcal Electronic energy + Delta-G solvation = -23331.777892 eV Core-core repulsion = 19956.635990 eV Total energy + Delta-G solvation = -3375.141901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.05776 -38.94076 -36.99192 -35.76715 -33.96957 -32.30954 -30.33135 -30.20051 -29.58684 -27.14847 -25.47304 -24.87321 -23.66358 -22.10832 -21.60269 -20.53472 -19.91997 -18.00395 -17.01733 -16.61594 -16.35628 -15.49452 -15.20877 -14.74423 -14.62330 -14.48036 -14.10856 -13.94449 -13.80127 -13.58809 -13.42129 -13.12894 -12.75948 -12.70046 -12.21901 -11.92798 -11.85369 -11.59500 -11.40566 -11.31310 -11.20315 -10.95964 -10.80404 -10.63064 -10.50626 -10.43957 -10.39893 -9.60588 -9.35248 -8.86457 -8.31291 -8.18506 -7.19792 -6.47776 -4.06696 2.18650 2.23822 3.10032 3.11976 3.17417 3.76476 3.86110 3.94432 4.55169 4.62916 4.76173 4.93564 4.98867 5.07038 5.11006 5.20309 5.23042 5.25429 5.28194 5.41945 5.45561 5.51570 5.60985 5.68458 5.70356 5.72126 5.82292 5.85226 5.94953 5.97544 6.02084 6.11050 6.19221 6.40277 6.67709 6.86574 6.94871 7.04633 7.05776 7.15166 7.25190 7.36325 7.41865 7.79637 7.97282 8.97982 9.67984 10.70239 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.003321 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.517303 B = 8430.046557 C = 8981.772142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.048 3.952 4 H 0.046 0.954 5 C 0.070 3.930 6 O -0.390 6.390 7 C 0.063 3.937 8 C 0.018 3.982 9 N -0.527 5.527 10 C 0.112 3.888 11 C -0.185 4.185 12 C -0.052 4.052 13 C -0.195 4.195 14 C 0.157 3.843 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.234 4.234 25 C -0.066 4.066 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.101 0.899 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.527 -0.156 -3.816 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.061 4.061 4 H 0.064 0.936 5 C -0.008 4.008 6 O -0.308 6.308 7 C -0.014 4.014 8 C -0.110 4.110 9 N -0.252 5.252 10 C -0.014 4.014 11 C -0.187 4.187 12 C -0.071 4.071 13 C -0.214 4.214 14 C 0.103 3.897 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.084 4.084 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.119 0.881 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.999 -0.410 -4.323 19.489 hybrid contribution 0.254 1.020 1.257 1.639 sum -18.745 0.610 -3.067 19.004 Atomic orbital electron populations 1.21811 0.95589 1.01841 1.01818 1.21580 0.95420 0.95403 1.03260 1.22360 0.88754 0.96815 0.98197 0.93638 1.22721 0.98478 0.83479 0.96079 1.87954 1.21295 1.27253 1.94317 1.22720 0.80739 1.01126 0.96842 1.22848 1.02579 0.88435 0.97174 1.62341 1.08265 1.15795 1.38840 1.20860 0.92532 0.98677 0.89342 1.19072 0.93500 0.98863 1.07229 1.20453 0.92122 0.97421 0.97070 1.20222 0.94580 1.00319 1.06267 1.19403 0.84947 0.93204 0.92176 1.83984 1.15153 1.40105 1.68815 1.21371 0.91491 0.98010 1.35940 0.89035 1.25294 0.94886 0.99058 0.97264 1.70046 1.03125 1.34505 1.41979 0.85652 0.79192 0.79908 0.78710 1.19106 1.20126 1.20106 1.21123 0.93272 1.02810 1.08160 1.20608 0.94302 0.96285 0.97241 0.92762 0.92572 0.92427 0.91224 0.90925 0.92401 0.88816 0.88592 0.92250 0.94500 0.88132 0.95126 0.90336 0.87034 0.86546 0.92035 0.85619 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.57 37.16 0.36 -0.75 16 2 C -0.12 -1.08 5.25 -26.73 -0.14 -1.22 16 3 C 0.05 0.52 2.05 -67.60 -0.14 0.38 16 4 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 5 C 0.07 0.74 5.97 37.20 0.22 0.96 16 6 O -0.39 -5.01 10.83 -35.23 -0.38 -5.40 16 7 C 0.06 0.77 7.01 37.21 0.26 1.03 16 8 C 0.02 0.24 4.84 -3.71 -0.02 0.22 16 9 N -0.53 -6.90 4.64 -227.78 -1.06 -7.96 16 10 C 0.11 1.53 4.71 -4.97 -0.02 1.50 16 11 C -0.19 -3.08 4.39 -104.57 -0.46 -3.54 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 13 C -0.19 -4.06 9.99 -39.40 -0.39 -4.46 16 14 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 15 O -0.18 -5.03 9.76 0.04 0.00 -5.03 16 16 C -0.39 -10.87 9.49 30.89 0.29 -10.57 16 17 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16 20 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.23 -4.99 9.17 -39.39 -0.36 -5.35 16 25 C -0.07 -1.17 7.79 -39.61 -0.31 -1.48 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.37 6.86 -51.93 -0.36 0.01 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.65 6.20 -51.93 -0.32 0.33 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.82 6.84 -51.93 -0.36 0.46 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 1.55 5.86 -51.93 -0.30 1.24 16 37 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 38 H 0.08 0.98 6.35 -51.93 -0.33 0.65 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 43 H 0.10 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -30.07 340.46 -8.46 -38.54 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.44 Total: 3.85 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.45 Total: -20.11 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: -0.30 Total: -32.36 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.38 Total: -10.42 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.07 -8.46 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734489389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.261 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds