Wall clock time and date at job start Tue Mar 31 2020 07:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46843 * 2 1 4 4 H 1.08999 * 109.50351 * 54.92523 * 3 2 1 5 5 C 1.53090 * 109.50832 * 294.78787 * 3 2 1 6 6 O 1.43023 * 109.26056 * 183.21721 * 5 3 2 7 7 C 1.43014 * 113.73627 * 58.66636 * 6 5 3 8 8 C 1.53098 * 109.26194 * 301.33451 * 7 6 5 9 9 N 1.47012 * 109.50545 * 175.00359 * 3 2 1 10 10 C 1.46901 * 111.00364 * 302.32986 * 9 3 2 11 11 C 1.50702 * 109.47297 * 184.39705 * 10 9 3 12 12 C 1.38306 * 119.93155 * 269.73027 * 11 10 9 13 13 C 1.38091 * 120.06418 * 179.72718 * 12 11 10 14 14 C 1.38878 * 119.93577 * 0.56305 * 13 12 11 15 15 O 1.35752 * 120.07048 * 179.68396 * 14 13 12 16 16 C 1.34831 * 116.99781 * 174.66806 * 15 14 13 17 17 H 1.08005 * 120.00067 * 5.49892 * 16 15 14 18 18 C 1.38656 * 120.00057 * 185.50240 * 16 15 14 19 19 N 1.31554 * 119.99875 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00055 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47189 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47037 * 120.00230 * 20 18 16 23 23 H 1.48498 * 109.47033 * 240.00012 * 20 18 16 24 24 C 1.38880 * 119.86012 * 359.71017 * 14 13 12 25 25 C 1.38105 * 119.92959 * 359.97438 * 24 14 13 26 26 H 1.09000 * 109.46745 * 304.31465 * 1 2 3 27 27 H 1.08999 * 109.47129 * 64.32014 * 1 2 3 28 28 H 1.08995 * 109.46576 * 184.31753 * 1 2 3 29 29 H 1.08995 * 109.47526 * 119.99977 * 2 1 3 30 30 H 1.09005 * 109.47178 * 240.00719 * 2 1 3 31 31 H 1.08998 * 109.51128 * 303.15266 * 5 3 2 32 32 H 1.09002 * 109.50603 * 63.28477 * 5 3 2 33 33 H 1.09000 * 109.50837 * 181.39802 * 7 6 5 34 34 H 1.09002 * 109.50347 * 61.26810 * 7 6 5 35 35 H 1.08999 * 109.50559 * 296.91575 * 8 7 6 36 36 H 1.08996 * 109.50752 * 176.78298 * 8 7 6 37 37 H 1.08994 * 109.47433 * 304.39975 * 10 9 3 38 38 H 1.08999 * 109.46657 * 64.40131 * 10 9 3 39 39 H 1.07999 * 119.96371 * 359.97388 * 12 11 10 40 40 H 1.08006 * 120.03279 * 180.27090 * 13 12 11 41 41 H 0.97003 * 120.00333 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.03917 * 179.97438 * 24 14 13 43 43 H 1.07995 * 119.96525 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6046 1.9825 0.8409 5 6 1.6400 2.1262 -1.3101 6 8 2.1830 3.4491 -1.3369 7 6 3.6080 3.4888 -1.2221 8 6 4.0280 2.8189 0.0889 9 7 3.5051 1.4453 0.1207 10 6 3.9343 0.7468 1.3397 11 6 5.4298 0.8630 1.4851 12 6 6.2541 -0.0977 0.9280 13 6 7.6250 0.0091 1.0548 14 6 8.1754 1.0762 1.7526 15 8 9.5225 1.1805 1.8844 16 6 9.9951 2.2957 2.4767 17 1 9.3091 3.0142 2.9006 18 6 11.3618 2.5204 2.5414 19 7 12.1974 1.6456 2.0245 20 14 12.0165 4.0660 3.3612 21 1 10.8798 4.8826 3.8573 22 1 12.8906 3.6893 4.5011 23 1 12.7996 4.8548 2.3766 24 6 7.3448 2.0363 2.3157 25 6 5.9748 1.9274 2.1799 26 1 -0.3633 0.5793 0.8488 27 1 -0.3633 0.4453 -0.9262 28 1 -0.3632 -1.0247 0.0774 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 2.0304 1.5554 -2.1526 32 1 0.5532 2.1775 -1.3768 33 1 3.9446 4.5256 -1.2252 34 1 4.0557 2.9576 -2.0620 35 1 3.6243 3.3815 0.9307 36 1 5.1157 2.7960 0.1537 37 1 3.4490 1.1962 2.2060 38 1 3.6565 -0.3051 1.2725 39 1 5.8253 -0.9301 0.3899 40 1 8.2684 -0.7392 0.6158 41 1 13.1535 1.8026 2.0701 42 1 7.7697 2.8672 2.8593 43 1 5.3283 2.6739 2.6172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734489389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:23 Heat of formation + Delta-G solvation = -65.254764 kcal Electronic energy + Delta-G solvation = -23332.621610 eV Core-core repulsion = 19956.635990 eV Total energy + Delta-G solvation = -3375.985620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20789 -40.48588 -38.53507 -36.86797 -34.94916 -34.23529 -31.82881 -31.64833 -30.49698 -28.38628 -27.32949 -25.70237 -24.92563 -23.65995 -22.54411 -22.00813 -20.90690 -19.84293 -18.83042 -17.55092 -17.38938 -16.63357 -16.52063 -16.30822 -15.92265 -15.64480 -15.52256 -15.38025 -15.01183 -14.94911 -14.60756 -14.37443 -14.11440 -13.91739 -13.61087 -13.24820 -13.01173 -12.83204 -12.61410 -12.42992 -12.37289 -12.29982 -12.16423 -12.10791 -11.69587 -11.65891 -11.32617 -11.18456 -10.80695 -10.54280 -9.77549 -9.36794 -8.89090 -8.48116 -6.16237 0.58310 0.64820 1.34438 1.42368 1.52534 2.16650 2.65951 2.89626 2.97630 3.23038 3.51642 3.78353 3.87011 3.92762 4.02946 4.15502 4.16822 4.20182 4.25264 4.39268 4.45713 4.47645 4.59135 4.60147 4.71942 4.74090 4.78875 4.83366 4.87853 4.93990 5.04058 5.07210 5.14342 5.21319 5.28940 5.31000 5.43840 5.56200 5.70082 5.77195 5.99806 6.02297 6.06076 6.18446 6.23004 6.96836 7.77714 8.75322 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.003321 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.517303 B = 8430.046557 C = 8981.772142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.050 3.950 4 H 0.042 0.958 5 C 0.066 3.934 6 O -0.402 6.402 7 C 0.065 3.935 8 C 0.019 3.981 9 N -0.534 5.534 10 C 0.115 3.885 11 C -0.158 4.158 12 C -0.045 4.045 13 C -0.205 4.205 14 C 0.117 3.883 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.101 0.899 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.252 1.252 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.241 4.241 25 C -0.060 4.060 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.995 0.289 -3.771 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.058 4.058 4 H 0.060 0.940 5 C -0.011 4.011 6 O -0.321 6.321 7 C -0.012 4.012 8 C -0.109 4.109 9 N -0.259 5.259 10 C -0.011 4.011 11 C -0.159 4.159 12 C -0.063 4.063 13 C -0.224 4.224 14 C 0.067 3.933 15 O -0.139 6.139 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.837 3.163 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.260 4.260 25 C -0.079 4.079 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.117 0.883 39 H 0.164 0.836 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.540 0.022 -4.285 22.944 hybrid contribution 0.944 0.770 1.144 1.671 sum -21.596 0.791 -3.142 21.838 Atomic orbital electron populations 1.21791 0.94112 1.02584 1.02276 1.21560 0.96671 0.93817 1.03182 1.22429 0.87011 0.98185 0.98195 0.93974 1.22907 0.99700 0.82571 0.95891 1.87945 1.21262 1.28609 1.94311 1.22711 0.80792 1.01717 0.96006 1.22776 1.01178 0.88994 0.97947 1.62332 1.09994 1.15417 1.38191 1.20890 0.89742 1.00272 0.90242 1.19526 0.95568 0.96939 1.03836 1.20818 0.90611 0.98480 0.96439 1.20463 0.96218 0.99606 1.06102 1.19924 0.84135 0.95174 0.94114 1.83947 1.17477 1.41153 1.71310 1.21843 0.92292 0.98436 1.36285 0.88163 1.26576 0.94806 1.02731 0.97885 1.70187 1.03524 1.37284 1.44876 0.84540 0.78727 0.75339 0.77673 1.17500 1.19318 1.19344 1.21187 0.94644 1.02102 1.08108 1.20876 0.93001 0.97179 0.96823 0.92701 0.91809 0.91537 0.91261 0.90990 0.92302 0.86667 0.87496 0.92537 0.94486 0.90303 0.94082 0.88319 0.83649 0.86939 0.91829 0.86530 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.57 71.98 0.69 -0.91 16 2 C -0.11 -1.64 5.25 30.60 0.16 -1.48 16 3 C 0.05 0.93 2.05 44.93 0.09 1.02 16 4 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 5 C 0.07 1.20 5.97 72.01 0.43 1.63 16 6 O -0.40 -9.33 10.83 -148.98 -1.61 -10.95 16 7 C 0.06 1.46 7.01 72.02 0.50 1.97 16 8 C 0.02 0.48 4.84 86.31 0.42 0.89 16 9 N -0.53 -12.25 4.64 -874.56 -4.06 -16.31 16 10 C 0.11 2.68 4.71 85.56 0.40 3.08 16 11 C -0.16 -4.82 4.39 -19.83 -0.09 -4.91 16 12 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 13 C -0.20 -8.68 9.99 22.39 0.22 -8.45 16 14 C 0.12 5.81 6.65 22.58 0.15 5.96 16 15 O -0.23 -14.02 9.76 -22.76 -0.22 -14.24 16 16 C -0.41 -24.06 9.49 67.92 0.64 -23.41 16 17 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 18 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 19 N -0.92 -56.65 13.67 21.61 0.30 -56.35 16 20 Si 1.02 42.92 29.55 68.60 2.03 44.95 16 21 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 C -0.24 -10.42 9.17 22.39 0.21 -10.22 16 25 C -0.06 -2.05 7.79 22.25 0.17 -1.88 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.59 6.86 -2.39 -0.02 0.57 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 1.01 6.20 -2.39 -0.01 0.99 16 30 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 1.59 6.84 -2.39 -0.02 1.57 16 33 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 2.29 5.86 -2.39 -0.01 2.28 16 37 H 0.04 0.92 8.08 -2.39 -0.02 0.90 16 38 H 0.10 1.99 6.35 -2.39 -0.02 1.98 16 39 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 40 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 43 H 0.13 3.70 8.04 -2.91 -0.02 3.68 16 Total: -1.00 -69.24 340.46 2.12 -67.12 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 1.00 Total: 24.60 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.69 Total: -38.82 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -3.76 Total: -72.66 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.84 Total: -25.19 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -69.24 2.12 -67.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734489389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.867 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds