Wall clock time and date at job start Tue Mar 31 2020 07:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47060 * 2 1 4 4 C 1.52999 * 109.47355 * 120.00058 * 2 1 3 5 5 O 1.42900 * 109.47216 * 64.99611 * 4 2 1 6 6 N 1.41595 * 114.00323 * 180.02562 * 5 4 2 7 7 C 1.29320 * 120.00342 * 180.02562 * 6 5 4 8 8 C 1.47659 * 120.00345 * 179.97438 * 7 6 5 9 9 C 1.39651 * 120.12068 * 359.97438 * 8 7 6 10 10 C 1.37956 * 119.96153 * 180.02562 * 9 8 7 11 11 C 1.38290 * 120.20692 * 359.73862 * 10 9 8 12 12 C 1.38812 * 120.24943 * 0.51762 * 11 10 9 13 13 O 1.35903 * 119.98510 * 179.76566 * 12 11 10 14 14 C 1.42898 * 116.99959 * 359.71704 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.38491 * 120.03328 * 359.48243 * 12 11 10 25 25 H 1.09004 * 109.46745 * 300.00365 * 1 2 3 26 26 H 1.08999 * 109.47309 * 59.99821 * 1 2 3 27 27 H 1.08996 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47393 * 240.00173 * 2 1 3 29 29 H 1.09006 * 109.46586 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46888 * 299.99896 * 3 2 1 31 31 H 1.08993 * 109.47139 * 60.00313 * 3 2 1 32 32 H 1.09000 * 109.46860 * 304.99788 * 4 2 1 33 33 H 1.08998 * 109.47298 * 185.00197 * 4 2 1 34 34 H 1.08000 * 120.00082 * 0.02562 * 7 6 5 35 35 H 1.07998 * 120.01743 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.89487 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.87278 * 180.25296 * 11 10 9 38 38 H 1.09002 * 109.47259 * 300.00539 * 14 13 12 39 39 H 1.09001 * 109.47074 * 60.00561 * 14 13 12 40 40 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 42 42 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.10509 * 180.23436 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0981 1.1920 6 7 2.0874 -2.8591 2.3078 7 6 1.8080 -4.1199 2.3751 8 6 2.2522 -4.9136 3.5383 9 6 2.9747 -4.3053 4.5670 10 6 3.3886 -5.0501 5.6520 11 6 3.0856 -6.3973 5.7275 12 6 2.3724 -7.0119 4.7074 13 8 2.0817 -8.3372 4.7849 14 6 2.5464 -9.0368 5.9411 15 6 2.1275 -10.5055 5.8511 16 6 2.6170 -11.2432 7.0707 17 1 3.1710 -10.7169 7.8339 18 6 2.3566 -12.5896 7.2127 19 7 1.6814 -13.2304 6.2836 20 14 2.9639 -13.5042 8.7241 21 1 1.9289 -13.4452 9.7874 22 1 3.2308 -14.9216 8.3710 23 1 4.2148 -12.8724 9.2155 24 6 1.9520 -6.2740 3.6135 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2617 2.1369 33 1 3.1263 -0.6443 1.2951 34 1 1.2504 -4.5927 1.5801 35 1 3.2101 -3.2527 4.5127 36 1 3.9476 -4.5787 6.4467 37 1 3.4087 -6.9743 6.5814 38 1 3.6333 -8.9717 5.9927 39 1 2.1127 -8.5891 6.8353 40 1 1.0407 -10.5709 5.7993 41 1 2.5614 -10.9530 4.9570 42 1 1.4979 -14.1776 6.3837 43 1 1.3938 -6.7501 2.8211 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749636458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:53 Heat of formation + Delta-G solvation = -25.407150 kcal Electronic energy + Delta-G solvation = -21246.167465 eV Core-core repulsion = 17871.909767 eV Total energy + Delta-G solvation = -3374.257697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.84818 -38.24975 -37.42155 -35.77127 -33.66110 -33.33503 -31.07726 -30.17061 -29.07042 -27.56298 -26.29476 -25.20386 -23.55156 -22.43665 -21.23392 -20.65976 -19.92627 -17.75809 -17.50245 -16.35236 -16.20762 -15.70497 -15.59770 -15.38383 -15.12970 -14.62477 -14.48082 -14.28066 -13.83130 -13.46420 -13.15135 -12.98951 -12.86584 -12.58798 -12.34511 -12.19111 -11.67867 -11.58720 -11.47967 -11.44025 -11.25230 -11.12357 -10.90864 -10.80506 -10.55196 -10.09247 -10.07599 -9.86784 -9.69290 -9.32849 -8.62522 -8.46765 -7.93961 -6.12486 -4.17337 0.73013 1.56651 2.35950 2.38661 3.26108 3.32244 3.34810 3.75791 3.92332 4.37952 4.43330 4.47748 4.53866 4.63929 4.92158 5.04578 5.13722 5.16066 5.21572 5.24081 5.24927 5.33557 5.40790 5.45910 5.50464 5.53046 5.54369 5.65660 5.82907 5.92455 5.98152 5.98934 5.99165 6.11404 6.43167 6.47020 6.49722 6.65402 6.81788 7.32802 7.46653 7.60994 7.76872 7.99781 8.20886 8.88207 9.47210 10.98976 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.052784 B = 0.001924 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.340610 B =14547.379196 C =14968.304970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.081 3.919 5 O -0.242 6.242 6 N -0.339 5.339 7 C 0.159 3.841 8 C -0.030 4.030 9 C -0.129 4.129 10 C -0.086 4.086 11 C -0.192 4.192 12 C 0.141 3.859 13 O -0.314 6.314 14 C 0.064 3.936 15 C 0.025 3.975 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.127 4.127 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 25.542 -9.480 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.202 4.202 4 C 0.004 3.996 5 O -0.257 6.257 6 N -0.084 5.084 7 C -0.051 4.051 8 C -0.032 4.032 9 C -0.149 4.149 10 C -0.105 4.105 11 C -0.211 4.211 12 C 0.094 3.906 13 O -0.227 6.227 14 C -0.010 4.010 15 C -0.012 4.012 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.148 4.148 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.915 25.972 -9.462 27.657 hybrid contribution 0.077 -0.950 0.570 1.110 sum 0.992 25.022 -8.893 26.573 Atomic orbital electron populations 1.21819 0.94450 1.02435 1.01685 1.21152 0.96868 0.95863 0.97552 1.21772 1.01244 0.94761 1.02414 1.22497 0.99280 0.79707 0.98136 1.89810 1.76618 1.21691 1.37573 1.76589 1.16610 1.07728 1.07447 1.24259 0.93985 0.90803 0.96042 1.17989 1.00251 0.91798 0.93137 1.21137 0.99703 1.00219 0.93850 1.20882 0.98586 0.93288 0.97700 1.21581 1.03058 0.96281 1.00216 1.18969 0.93341 0.84788 0.93486 1.86188 1.73660 1.16955 1.45886 1.23367 0.97981 0.95364 0.84250 1.19130 0.98113 0.85724 0.98267 1.20967 1.36339 0.94158 1.05143 0.92342 1.24989 0.94980 0.97537 0.96653 1.69976 1.39329 1.09835 1.33532 0.86483 0.79188 0.79008 0.82679 1.20495 1.21043 1.19765 1.20415 1.03866 0.92003 0.98555 0.92669 0.92554 0.92044 0.90313 0.92324 0.91811 0.92300 0.92566 0.92619 0.85800 0.85402 0.85633 0.84821 0.92996 0.92998 0.95344 0.95328 0.92690 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.09 37.16 0.34 -0.70 16 2 C -0.09 -0.68 3.16 -90.62 -0.29 -0.96 16 3 C -0.14 -0.77 9.19 37.16 0.34 -0.43 16 4 C 0.08 0.74 5.78 37.16 0.21 0.96 16 5 O -0.24 -2.94 10.89 -11.47 -0.12 -3.06 16 6 N -0.34 -4.31 10.46 32.14 0.34 -3.98 16 7 C 0.16 1.88 10.90 -14.76 -0.16 1.72 16 8 C -0.03 -0.39 5.87 -105.05 -0.62 -1.01 16 9 C -0.13 -1.60 9.57 -39.16 -0.37 -1.98 16 10 C -0.09 -1.07 10.03 -39.67 -0.40 -1.47 16 11 C -0.19 -2.79 9.03 -39.35 -0.36 -3.15 16 12 C 0.14 2.30 6.68 -39.28 -0.26 2.04 16 13 O -0.31 -6.13 10.13 -19.44 -0.20 -6.33 16 14 C 0.06 1.32 4.68 37.16 0.17 1.50 16 15 C 0.02 0.63 5.34 -27.89 -0.15 0.49 16 16 C -0.53 -14.46 9.11 -34.44 -0.31 -14.78 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 20 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.13 -1.79 9.73 -39.01 -0.38 -2.17 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.51 7.82 -51.93 -0.41 0.11 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.46 7.55 -52.49 -0.40 1.06 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.89 6.28 -52.49 -0.33 1.56 16 38 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 39 H 0.05 1.01 7.64 -51.93 -0.40 0.61 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -30.16 367.86 -8.02 -38.18 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -6.96 Total: -2.63 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.33 Total: -18.33 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 1.07 Total: -29.35 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.32 Total: -9.39 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.16 -8.02 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749636458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.773 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds