Wall clock time and date at job start Tue Mar 31 2020 07:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47060 * 2 1 4 4 C 1.52999 * 109.47355 * 120.00058 * 2 1 3 5 5 O 1.42900 * 109.47216 * 64.99611 * 4 2 1 6 6 N 1.41595 * 114.00323 * 180.02562 * 5 4 2 7 7 C 1.29320 * 120.00342 * 180.02562 * 6 5 4 8 8 C 1.47659 * 120.00345 * 179.97438 * 7 6 5 9 9 C 1.39651 * 120.12068 * 359.97438 * 8 7 6 10 10 C 1.37956 * 119.96153 * 180.02562 * 9 8 7 11 11 C 1.38290 * 120.20692 * 359.73862 * 10 9 8 12 12 C 1.38812 * 120.24943 * 0.51762 * 11 10 9 13 13 O 1.35903 * 119.98510 * 179.76566 * 12 11 10 14 14 C 1.42898 * 116.99959 * 359.71704 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.38491 * 120.03328 * 359.48243 * 12 11 10 25 25 H 1.09004 * 109.46745 * 300.00365 * 1 2 3 26 26 H 1.08999 * 109.47309 * 59.99821 * 1 2 3 27 27 H 1.08996 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47393 * 240.00173 * 2 1 3 29 29 H 1.09006 * 109.46586 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46888 * 299.99896 * 3 2 1 31 31 H 1.08993 * 109.47139 * 60.00313 * 3 2 1 32 32 H 1.09000 * 109.46860 * 304.99788 * 4 2 1 33 33 H 1.08998 * 109.47298 * 185.00197 * 4 2 1 34 34 H 1.08000 * 120.00082 * 0.02562 * 7 6 5 35 35 H 1.07998 * 120.01743 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.89487 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.87278 * 180.25296 * 11 10 9 38 38 H 1.09002 * 109.47259 * 300.00539 * 14 13 12 39 39 H 1.09001 * 109.47074 * 60.00561 * 14 13 12 40 40 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 42 42 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.10509 * 180.23436 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0981 1.1920 6 7 2.0874 -2.8591 2.3078 7 6 1.8080 -4.1199 2.3751 8 6 2.2522 -4.9136 3.5383 9 6 2.9747 -4.3053 4.5670 10 6 3.3886 -5.0501 5.6520 11 6 3.0856 -6.3973 5.7275 12 6 2.3724 -7.0119 4.7074 13 8 2.0817 -8.3372 4.7849 14 6 2.5464 -9.0368 5.9411 15 6 2.1275 -10.5055 5.8511 16 6 2.6170 -11.2432 7.0707 17 1 3.1710 -10.7169 7.8339 18 6 2.3566 -12.5896 7.2127 19 7 1.6814 -13.2304 6.2836 20 14 2.9639 -13.5042 8.7241 21 1 1.9289 -13.4452 9.7874 22 1 3.2308 -14.9216 8.3710 23 1 4.2148 -12.8724 9.2155 24 6 1.9520 -6.2740 3.6135 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2617 2.1369 33 1 3.1263 -0.6443 1.2951 34 1 1.2504 -4.5927 1.5801 35 1 3.2101 -3.2527 4.5127 36 1 3.9476 -4.5787 6.4467 37 1 3.4087 -6.9743 6.5814 38 1 3.6333 -8.9717 5.9927 39 1 2.1127 -8.5891 6.8353 40 1 1.0407 -10.5709 5.7993 41 1 2.5614 -10.9530 4.9570 42 1 1.4979 -14.1776 6.3837 43 1 1.3938 -6.7501 2.8211 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749636458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:52 Heat of formation + Delta-G solvation = -40.630234 kcal Electronic energy + Delta-G solvation = -21246.827587 eV Core-core repulsion = 17871.909767 eV Total energy + Delta-G solvation = -3374.917820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07020 -39.15971 -38.56765 -36.54940 -35.45650 -34.46597 -32.61265 -31.50077 -30.33013 -28.06235 -27.17103 -26.86921 -24.79274 -23.53609 -22.88431 -21.35727 -21.04074 -19.08904 -18.48644 -18.13869 -17.01122 -16.94430 -16.90970 -16.66421 -16.44848 -16.02143 -15.52234 -15.04211 -14.58327 -14.45022 -14.37344 -14.31836 -14.22869 -13.69769 -13.40302 -13.14892 -13.02809 -12.80847 -12.65761 -12.55431 -12.49746 -12.07908 -12.03557 -11.93623 -11.74183 -11.57991 -11.55697 -11.36990 -10.98697 -10.92389 -10.59932 -9.65554 -9.13590 -8.24823 -6.38129 -0.29557 0.47607 1.35918 1.42707 1.44606 1.50537 1.55796 2.29185 2.53074 2.85301 3.09969 3.59162 3.83616 3.87387 3.92711 4.01237 4.12212 4.22518 4.28467 4.31468 4.36739 4.50205 4.52169 4.52941 4.59297 4.71185 4.76888 4.77886 4.93971 4.98603 4.99101 5.11334 5.17937 5.31784 5.35452 5.37083 5.40719 5.46943 5.50559 5.51756 5.67834 5.80688 6.09273 6.41712 6.54435 6.77042 7.32042 8.88066 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.052784 B = 0.001924 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.340610 B =14547.379196 C =14968.304970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.141 4.141 4 C 0.076 3.924 5 O -0.254 6.254 6 N -0.351 5.351 7 C 0.158 3.842 8 C -0.029 4.029 9 C -0.123 4.123 10 C -0.080 4.080 11 C -0.198 4.198 12 C 0.108 3.892 13 O -0.337 6.337 14 C 0.083 3.917 15 C 0.026 3.974 16 C -0.546 4.546 17 H 0.072 0.928 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.975 3.025 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.129 4.129 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.136 0.864 38 H 0.063 0.937 39 H 0.063 0.937 40 H -0.001 1.001 41 H -0.001 1.001 42 H 0.266 0.734 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 27.603 -8.655 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.001 4.001 5 O -0.269 6.269 6 N -0.095 5.095 7 C -0.051 4.051 8 C -0.030 4.030 9 C -0.143 4.143 10 C -0.098 4.098 11 C -0.217 4.217 12 C 0.062 3.938 13 O -0.252 6.252 14 C 0.009 3.991 15 C -0.011 4.011 16 C -0.584 4.584 17 H 0.090 0.910 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.150 4.150 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.075 0.925 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.908 28.067 -8.639 29.428 hybrid contribution -0.247 -1.427 0.212 1.464 sum 1.660 26.640 -8.427 27.990 Atomic orbital electron populations 1.21809 0.94436 1.01561 1.02464 1.21178 0.96859 0.96733 0.96347 1.21759 1.01515 0.93381 1.03160 1.22724 0.99561 0.78540 0.99254 1.89810 1.76829 1.22932 1.37357 1.76517 1.16862 1.08079 1.08047 1.24298 0.93984 0.90749 0.96088 1.18063 0.99986 0.91297 0.93658 1.21412 0.98603 1.00901 0.93431 1.21187 0.97952 0.92268 0.98345 1.21708 1.02890 0.97328 0.99794 1.19243 0.95646 0.83549 0.95346 1.86097 1.74650 1.19031 1.45383 1.22897 0.98452 0.92529 0.85239 1.18976 0.95987 0.89328 0.96804 1.21420 1.36316 0.94831 1.05815 0.91003 1.26021 0.94979 0.98649 1.00021 1.70122 1.40711 1.10271 1.35855 0.85304 0.79119 0.77346 0.78403 1.19639 1.20822 1.18296 1.20537 1.03721 0.92478 0.98232 0.92471 0.91220 0.93708 0.90630 0.91913 0.90711 0.91915 0.92493 0.92406 0.84190 0.83986 0.82521 0.84605 0.91899 0.91874 0.98249 0.98229 0.92523 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.09 71.98 0.65 -1.24 16 2 C -0.09 -1.18 3.16 -10.79 -0.03 -1.22 16 3 C -0.14 -1.22 9.19 71.98 0.66 -0.56 16 4 C 0.08 1.31 5.78 71.98 0.42 1.72 16 5 O -0.25 -5.90 10.89 -38.77 -0.42 -6.33 16 6 N -0.35 -8.43 10.46 -52.24 -0.55 -8.97 16 7 C 0.16 3.54 10.90 87.55 0.95 4.50 16 8 C -0.03 -0.70 5.87 -20.14 -0.12 -0.82 16 9 C -0.12 -2.79 9.57 22.54 0.22 -2.57 16 10 C -0.08 -1.78 10.03 22.22 0.22 -1.56 16 11 C -0.20 -5.51 9.03 22.42 0.20 -5.31 16 12 C 0.11 3.50 6.68 22.47 0.15 3.65 16 13 O -0.34 -13.52 10.13 -92.46 -0.94 -14.46 16 14 C 0.08 3.47 4.68 71.98 0.34 3.81 16 15 C 0.03 1.40 5.34 29.85 0.16 1.56 16 16 C -0.55 -30.24 9.11 25.60 0.23 -30.01 16 17 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 20 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 C -0.13 -3.56 9.73 22.64 0.22 -3.34 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.04 0.73 7.82 -2.39 -0.02 0.71 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.14 2.84 7.55 -2.91 -0.02 2.82 16 36 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.14 3.67 6.28 -2.91 -0.02 3.65 16 38 H 0.06 2.45 7.67 -2.39 -0.02 2.43 16 39 H 0.06 2.46 7.64 -2.39 -0.02 2.44 16 40 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -65.69 367.86 6.11 -59.58 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.97 Total: 11.77 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.74 Total: -30.81 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.26 Total: -64.71 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -1.36 Total: -20.78 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -65.69 6.11 -59.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749636458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.946 kcal (2) G-P(sol) polarization free energy of solvation -65.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds