Wall clock time and date at job start Tue Mar 31 2020 07:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46691 * 2 1 4 4 C 1.53004 * 109.46979 * 119.99453 * 2 1 3 5 5 O 1.42902 * 109.47113 * 65.00417 * 4 2 1 6 6 N 1.41597 * 113.99785 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99737 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00194 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47010 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47465 * 305.00010 * 10 9 7 12 12 C 1.50698 * 109.47080 * 65.00685 * 10 9 7 13 13 H 1.08002 * 120.00223 * 26.94016 * 12 10 9 14 14 C 1.37886 * 120.00006 * 206.93845 * 12 10 9 15 15 N 1.31507 * 120.00030 * 186.61954 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 6.90022 * 14 12 10 17 17 H 1.48503 * 109.46742 * 274.25466 * 16 14 12 18 18 H 1.48500 * 109.47460 * 34.25082 * 16 14 12 19 19 H 1.48499 * 109.46928 * 154.25467 * 16 14 12 20 20 C 1.50706 * 109.46940 * 184.99987 * 10 9 7 21 21 C 1.38233 * 119.99857 * 297.92917 * 20 10 9 22 22 C 1.38240 * 119.99757 * 179.78388 * 21 20 10 23 23 C 1.38239 * 119.99979 * 0.44453 * 22 21 20 24 24 C 1.38242 * 120.00017 * 359.80708 * 23 22 21 25 25 C 1.38230 * 119.99928 * 118.19592 * 20 10 9 26 26 H 1.08998 * 109.47616 * 299.99957 * 1 2 3 27 27 H 1.08998 * 109.47060 * 60.00519 * 1 2 3 28 28 H 1.09008 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47534 * 239.99499 * 2 1 3 30 30 H 1.09003 * 109.46568 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46945 * 299.99551 * 3 2 1 32 32 H 1.08998 * 109.47055 * 59.99700 * 3 2 1 33 33 H 1.09002 * 109.47178 * 305.00422 * 4 2 1 34 34 H 1.09000 * 109.46941 * 185.00590 * 4 2 1 35 35 H 0.96995 * 120.00278 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.46914 * 60.00574 * 9 7 6 37 37 H 1.09000 * 109.47087 * 300.00639 * 9 7 6 38 38 H 0.96994 * 119.99996 * 180.27656 * 15 14 12 39 39 H 1.07994 * 120.00554 * 359.97438 * 21 20 10 40 40 H 1.07996 * 120.00426 * 180.26872 * 22 21 20 41 41 H 1.08000 * 120.00114 * 179.82966 * 23 22 21 42 42 H 1.07993 * 120.00100 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.00162 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 8 1.6620 -2.0981 1.1922 6 7 2.0885 -2.8591 2.3075 7 6 1.7965 -4.1730 2.3781 8 8 1.1689 -4.7035 1.4861 9 6 2.2508 -4.9832 3.5648 10 6 1.7932 -6.4335 3.3975 11 1 0.7148 -6.4585 3.2414 12 6 2.4874 -7.0452 2.2080 13 1 3.4528 -6.6745 1.8966 14 6 1.8900 -8.0782 1.5172 15 7 2.5487 -8.6986 0.5628 16 14 0.1423 -8.5913 1.9316 17 1 0.1650 -9.5645 3.0530 18 1 -0.6434 -7.3958 2.3296 19 1 -0.4838 -9.2216 0.7417 20 6 2.1395 -7.2158 4.6382 21 6 3.4609 -7.3618 5.0168 22 6 3.7782 -8.0756 6.1574 23 6 2.7747 -8.6512 6.9141 24 6 1.4536 -8.5096 6.5325 25 6 1.1361 -7.7920 5.3944 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6441 1.2953 35 1 2.5900 -2.4347 3.0211 36 1 1.8183 -4.5681 4.4752 37 1 3.3383 -4.9510 3.6318 38 1 2.1271 -9.4226 0.0742 39 1 4.2452 -6.9156 4.4235 40 1 4.8103 -8.1860 6.4557 41 1 3.0228 -9.2112 7.8036 42 1 0.6696 -8.9589 7.1239 43 1 0.1039 -7.6813 5.0964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793729931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:37 Heat of formation + Delta-G solvation = -20.859429 kcal Electronic energy + Delta-G solvation = -23011.129695 eV Core-core repulsion = 19637.069202 eV Total energy + Delta-G solvation = -3374.060493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.14863 -38.42991 -37.47157 -35.06874 -34.03998 -31.86111 -31.34493 -30.21451 -28.82330 -27.33959 -26.30655 -25.47445 -22.65515 -21.88212 -20.86443 -20.18668 -19.16530 -17.83505 -16.96891 -16.53899 -15.99142 -15.76232 -14.85886 -14.54944 -14.44179 -14.18969 -13.97953 -13.83738 -13.34000 -13.05462 -12.73283 -12.63943 -12.52075 -12.35637 -12.31524 -12.00893 -11.89499 -11.41971 -11.29640 -11.16223 -10.92145 -10.78625 -10.59960 -10.51599 -10.36941 -9.91733 -9.59533 -9.17734 -9.00119 -8.46955 -8.38629 -8.21777 -7.83971 -5.97428 -3.93870 2.07400 2.11026 2.31846 3.42846 3.45526 3.48852 3.52719 4.50234 4.54959 4.58074 4.63661 4.67587 5.03419 5.21850 5.23747 5.31151 5.39962 5.47074 5.50825 5.54073 5.55695 5.65227 5.67175 5.73159 5.86232 5.86758 5.92642 6.03507 6.09503 6.20801 6.21757 6.30131 6.50782 6.67551 6.80605 7.01626 7.13377 7.23115 7.26040 7.57366 7.70207 7.81166 7.85398 8.53052 9.00296 9.03238 9.66487 11.15654 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.004025 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.178365 B = 6954.012702 C = 7829.015111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.143 4.143 4 C 0.037 3.963 5 O -0.149 6.149 6 N -0.615 5.615 7 C 0.522 3.478 8 O -0.480 6.480 9 C -0.101 4.101 10 C 0.048 3.952 11 H 0.056 0.944 12 C -0.486 4.486 13 H 0.073 0.927 14 C 0.085 3.915 15 N -0.897 5.897 16 Si 0.867 3.133 17 H -0.274 1.274 18 H -0.260 1.260 19 H -0.291 1.291 20 C -0.039 4.039 21 C -0.101 4.101 22 C -0.126 4.126 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.138 4.138 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.262 0.738 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.132 15.387 8.202 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.040 4.040 5 O -0.152 6.152 6 N -0.321 5.321 7 C 0.309 3.691 8 O -0.349 6.349 9 C -0.141 4.141 10 C 0.029 3.971 11 H 0.074 0.926 12 C -0.523 4.523 13 H 0.091 0.909 14 C -0.118 4.118 15 N -0.534 5.534 16 Si 0.695 3.305 17 H -0.200 1.200 18 H -0.185 1.185 19 H -0.217 1.217 20 C -0.040 4.040 21 C -0.119 4.119 22 C -0.144 4.144 23 C -0.167 4.167 24 C -0.142 4.142 25 C -0.156 4.156 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.236 0.764 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.479 14.718 7.197 16.390 hybrid contribution -0.481 0.025 0.421 0.640 sum -0.960 14.743 7.618 16.623 Atomic orbital electron populations 1.21832 0.94286 1.02969 1.01445 1.21060 0.97007 0.95570 0.97391 1.21780 1.01131 0.94884 1.02295 1.22997 0.99394 0.82555 0.99097 1.90586 1.76360 1.18799 1.29473 1.48081 1.60836 1.06821 1.16376 1.21118 0.80223 0.78370 0.89407 1.90768 1.37265 1.68382 1.38443 1.21598 1.02467 0.96788 0.93285 1.18261 0.98913 0.88200 0.91756 0.92597 1.20598 1.05646 1.16876 1.09209 0.90905 1.24863 0.97100 0.95408 0.94386 1.69881 1.37117 1.23003 1.23441 0.86968 0.86682 0.78952 0.77939 1.19974 1.18526 1.21731 1.20720 0.92854 0.96517 0.93926 1.20959 0.96503 0.98976 0.95438 1.21060 0.98392 0.98899 0.96099 1.20870 0.93195 1.02230 1.00408 1.20958 0.96127 0.99801 0.97345 1.21063 0.98954 1.00044 0.95549 0.92831 0.92578 0.91480 0.89899 0.92400 0.91821 0.92471 0.92623 0.92525 0.76398 0.90717 0.89237 0.92782 0.86155 0.87129 0.87380 0.87311 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.09 37.16 0.34 -1.21 16 2 C -0.09 -0.92 3.16 -90.61 -0.29 -1.21 16 3 C -0.14 -1.06 9.19 37.16 0.34 -0.72 16 4 C 0.04 0.42 5.61 37.16 0.21 0.63 16 5 O -0.15 -2.49 10.64 -29.66 -0.32 -2.81 16 6 N -0.61 -9.86 6.39 31.22 0.20 -9.66 16 7 C 0.52 10.64 7.72 -10.99 -0.08 10.56 16 8 O -0.48 -12.59 15.39 -12.64 -0.19 -12.79 16 9 C -0.10 -1.83 4.93 -27.88 -0.14 -1.97 16 10 C 0.05 1.09 1.21 -92.92 -0.11 0.98 16 11 H 0.06 1.38 4.88 -51.93 -0.25 1.12 16 12 C -0.49 -13.45 6.97 -34.44 -0.24 -13.69 16 13 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 14 C 0.08 2.52 5.47 -17.82 -0.10 2.43 16 15 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 16 Si 0.87 22.90 26.62 -169.99 -4.52 18.37 16 17 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.26 -6.73 6.29 56.52 0.36 -6.38 16 19 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 20 C -0.04 -0.82 4.52 -104.62 -0.47 -1.29 16 21 C -0.10 -1.92 8.86 -39.58 -0.35 -2.27 16 22 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 23 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16 24 C -0.12 -2.13 10.05 -39.58 -0.40 -2.52 16 25 C -0.14 -2.70 9.08 -39.58 -0.36 -3.06 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.87 7.82 -51.92 -0.41 0.46 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.40 4.53 8.54 -40.82 -0.35 4.18 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.47 7.69 -51.93 -0.40 1.07 16 38 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 39 H 0.12 2.24 7.72 -52.49 -0.40 1.83 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 43 H 0.11 2.08 7.91 -52.49 -0.42 1.66 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -35.52 357.83 -8.02 -43.54 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.91 Total: 4.10 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.45 Total: -18.66 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.97 Total: -37.16 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.51 Total: -15.59 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.52 Total: 18.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.52 -8.02 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793729931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.685 kcal (2) G-P(sol) polarization free energy of solvation -35.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds