Wall clock time and date at job start Tue Mar 31 2020 07:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46691 * 2 1 4 4 C 1.53004 * 109.46979 * 119.99453 * 2 1 3 5 5 O 1.42902 * 109.47113 * 65.00417 * 4 2 1 6 6 N 1.41597 * 113.99785 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99737 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00194 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47010 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47465 * 305.00010 * 10 9 7 12 12 C 1.50698 * 109.47080 * 65.00685 * 10 9 7 13 13 H 1.08002 * 120.00223 * 26.94016 * 12 10 9 14 14 C 1.37886 * 120.00006 * 206.93845 * 12 10 9 15 15 N 1.31507 * 120.00030 * 186.61954 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 6.90022 * 14 12 10 17 17 H 1.48503 * 109.46742 * 274.25466 * 16 14 12 18 18 H 1.48500 * 109.47460 * 34.25082 * 16 14 12 19 19 H 1.48499 * 109.46928 * 154.25467 * 16 14 12 20 20 C 1.50706 * 109.46940 * 184.99987 * 10 9 7 21 21 C 1.38233 * 119.99857 * 297.92917 * 20 10 9 22 22 C 1.38240 * 119.99757 * 179.78388 * 21 20 10 23 23 C 1.38239 * 119.99979 * 0.44453 * 22 21 20 24 24 C 1.38242 * 120.00017 * 359.80708 * 23 22 21 25 25 C 1.38230 * 119.99928 * 118.19592 * 20 10 9 26 26 H 1.08998 * 109.47616 * 299.99957 * 1 2 3 27 27 H 1.08998 * 109.47060 * 60.00519 * 1 2 3 28 28 H 1.09008 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47534 * 239.99499 * 2 1 3 30 30 H 1.09003 * 109.46568 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46945 * 299.99551 * 3 2 1 32 32 H 1.08998 * 109.47055 * 59.99700 * 3 2 1 33 33 H 1.09002 * 109.47178 * 305.00422 * 4 2 1 34 34 H 1.09000 * 109.46941 * 185.00590 * 4 2 1 35 35 H 0.96995 * 120.00278 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.46914 * 60.00574 * 9 7 6 37 37 H 1.09000 * 109.47087 * 300.00639 * 9 7 6 38 38 H 0.96994 * 119.99996 * 180.27656 * 15 14 12 39 39 H 1.07994 * 120.00554 * 359.97438 * 21 20 10 40 40 H 1.07996 * 120.00426 * 180.26872 * 22 21 20 41 41 H 1.08000 * 120.00114 * 179.82966 * 23 22 21 42 42 H 1.07993 * 120.00100 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.00162 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 8 1.6620 -2.0981 1.1922 6 7 2.0885 -2.8591 2.3075 7 6 1.7965 -4.1730 2.3781 8 8 1.1689 -4.7035 1.4861 9 6 2.2508 -4.9832 3.5648 10 6 1.7932 -6.4335 3.3975 11 1 0.7148 -6.4585 3.2414 12 6 2.4874 -7.0452 2.2080 13 1 3.4528 -6.6745 1.8966 14 6 1.8900 -8.0782 1.5172 15 7 2.5487 -8.6986 0.5628 16 14 0.1423 -8.5913 1.9316 17 1 0.1650 -9.5645 3.0530 18 1 -0.6434 -7.3958 2.3296 19 1 -0.4838 -9.2216 0.7417 20 6 2.1395 -7.2158 4.6382 21 6 3.4609 -7.3618 5.0168 22 6 3.7782 -8.0756 6.1574 23 6 2.7747 -8.6512 6.9141 24 6 1.4536 -8.5096 6.5325 25 6 1.1361 -7.7920 5.3944 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6441 1.2953 35 1 2.5900 -2.4347 3.0211 36 1 1.8183 -4.5681 4.4752 37 1 3.3383 -4.9510 3.6318 38 1 2.1271 -9.4226 0.0742 39 1 4.2452 -6.9156 4.4235 40 1 4.8103 -8.1860 6.4557 41 1 3.0228 -9.2112 7.8036 42 1 0.6696 -8.9589 7.1239 43 1 0.1039 -7.6813 5.0964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793729931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:37 Heat of formation + Delta-G solvation = -43.424945 kcal Electronic energy + Delta-G solvation = -23012.108210 eV Core-core repulsion = 19637.069202 eV Total energy + Delta-G solvation = -3375.039008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69414 -39.81696 -38.69921 -36.15926 -35.75916 -33.80586 -32.88896 -31.58457 -30.24639 -28.08250 -27.86821 -26.75394 -24.33388 -23.28177 -22.14674 -21.33174 -20.67358 -19.12144 -19.02446 -18.04835 -17.23167 -16.93812 -16.52385 -16.02780 -15.86003 -15.49731 -15.38648 -15.00349 -14.80169 -14.65589 -14.19830 -14.04116 -13.85563 -13.68108 -13.47281 -13.31701 -13.02744 -12.91253 -12.75040 -12.32007 -12.16811 -12.07231 -11.88402 -11.81820 -11.76659 -11.59022 -11.48624 -11.05199 -10.76517 -10.62190 -9.80130 -9.60557 -9.30537 -8.23204 -6.18607 0.68774 0.72897 1.03720 1.28711 1.33961 1.41757 1.86603 2.39127 3.08062 3.21712 3.55854 3.80477 3.85473 3.95785 4.11530 4.17389 4.27961 4.32530 4.41449 4.43125 4.49894 4.54016 4.61504 4.64243 4.77191 4.83259 4.87804 4.93563 4.98242 5.02387 5.17052 5.21659 5.32869 5.37585 5.38485 5.41547 5.68298 5.78290 5.82867 5.93195 6.03399 6.32683 6.36324 6.55337 6.80218 7.43691 7.54335 8.94138 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.004025 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.178365 B = 6954.012702 C = 7829.015111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.136 4.136 4 C 0.030 3.970 5 O -0.183 6.183 6 N -0.594 5.594 7 C 0.519 3.481 8 O -0.553 6.553 9 C -0.095 4.095 10 C 0.048 3.952 11 H 0.035 0.965 12 C -0.464 4.464 13 H 0.038 0.962 14 C 0.022 3.978 15 N -0.952 5.952 16 Si 0.917 3.083 17 H -0.257 1.257 18 H -0.257 1.257 19 H -0.299 1.299 20 C -0.062 4.062 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.156 4.156 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.422 0.578 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.259 0.741 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 16.806 11.757 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.193 4.193 4 C -0.047 4.047 5 O -0.188 6.188 6 N -0.300 5.300 7 C 0.307 3.693 8 O -0.427 6.427 9 C -0.135 4.135 10 C 0.029 3.971 11 H 0.053 0.947 12 C -0.501 4.501 13 H 0.056 0.944 14 C -0.174 4.174 15 N -0.593 5.593 16 Si 0.744 3.256 17 H -0.181 1.181 18 H -0.182 1.182 19 H -0.226 1.226 20 C -0.062 4.062 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.157 4.157 24 C -0.142 4.142 25 C -0.174 4.174 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.265 0.735 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.068 0.932 39 H 0.133 0.867 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.119 16.212 10.825 19.495 hybrid contribution -0.490 -0.246 -0.579 0.798 sum -0.609 15.966 10.247 18.981 Atomic orbital electron populations 1.21819 0.94681 1.01086 1.02808 1.21131 0.96728 0.97169 0.96133 1.21736 1.01589 0.92587 1.03396 1.23356 1.00691 0.80027 1.00608 1.90597 1.76981 1.21507 1.29687 1.47636 1.59479 1.06091 1.16795 1.21508 0.79217 0.79491 0.89080 1.90742 1.40745 1.70279 1.40975 1.21557 1.03754 0.94066 0.94162 1.18126 0.97003 0.90978 0.91020 0.94694 1.20855 1.03900 1.15148 1.10243 0.94400 1.25584 1.00462 0.96435 0.94949 1.70022 1.38740 1.24729 1.25855 0.86163 0.82878 0.78860 0.77748 1.18119 1.18226 1.22641 1.20411 0.94118 0.97690 0.94023 1.21038 0.95647 1.00093 0.96669 1.21418 1.00373 0.97509 0.94856 1.21349 0.92441 1.00938 1.01019 1.21326 0.97700 0.98754 0.96458 1.21197 0.98601 1.00843 0.96806 0.91476 0.91261 0.94895 0.91705 0.91633 0.90961 0.91147 0.90390 0.90898 0.73472 0.86316 0.87326 0.93243 0.86697 0.84106 0.83575 0.84326 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.09 71.98 0.65 -2.34 16 2 C -0.09 -1.78 3.16 -10.79 -0.03 -1.81 16 3 C -0.14 -1.68 9.19 71.98 0.66 -1.02 16 4 C 0.03 0.63 5.61 71.98 0.40 1.04 16 5 O -0.18 -6.15 10.64 -21.38 -0.23 -6.38 16 6 N -0.59 -18.63 6.39 -173.53 -1.11 -19.74 16 7 C 0.52 21.39 7.72 87.66 0.68 22.07 16 8 O -0.55 -30.30 15.39 14.36 0.22 -30.08 16 9 C -0.10 -3.39 4.93 29.85 0.15 -3.24 16 10 C 0.05 2.21 1.21 -12.29 -0.01 2.19 16 11 H 0.03 1.75 4.88 -2.39 -0.01 1.74 16 12 C -0.46 -26.65 6.97 25.60 0.18 -26.47 16 13 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 14 C 0.02 1.36 5.47 84.66 0.46 1.82 16 15 N -0.95 -63.09 13.96 21.45 0.30 -62.80 16 16 Si 0.92 48.94 26.62 68.60 1.83 50.76 16 17 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.26 -13.44 6.29 99.48 0.63 -12.81 16 19 H -0.30 -16.16 7.11 99.48 0.71 -15.45 16 20 C -0.06 -2.50 4.52 -19.87 -0.09 -2.59 16 21 C -0.12 -4.25 8.86 22.27 0.20 -4.05 16 22 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16 23 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 24 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 25 C -0.16 -5.80 9.08 22.27 0.20 -5.60 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.03 0.88 7.82 -2.38 -0.02 0.86 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.42 8.70 8.54 -92.71 -0.79 7.91 16 36 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.11 3.44 7.69 -2.39 -0.02 3.42 16 38 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 39 H 0.11 4.21 7.72 -2.91 -0.02 4.18 16 40 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 41 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 43 H 0.11 3.90 7.91 -2.91 -0.02 3.87 16 Total: -1.00 -83.31 357.83 5.24 -78.07 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.11 Total: 20.82 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.12 Total: -30.66 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -0.81 Total: -82.53 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.01 Total: -36.46 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.83 Total: 50.76 kcal Total: -83.31 5.24 -78.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793729931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.648 kcal (2) G-P(sol) polarization free energy of solvation -83.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds