Wall clock time and date at job start Tue Mar 31 2020 07:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 H 1.08997 * 109.47144 * 304.99998 * 3 2 1 5 5 C 1.53004 * 109.47005 * 65.00502 * 3 2 1 6 6 C 1.52999 * 109.47229 * 185.00165 * 3 2 1 7 7 O 1.42900 * 109.47579 * 174.99977 * 6 3 2 8 8 N 1.41590 * 114.00124 * 179.97438 * 7 6 3 9 9 C 1.34784 * 119.99878 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99871 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99906 * 180.02562 * 9 8 7 12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 8 13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9 14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11 15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12 16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9 18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11 19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12 20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12 21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17 23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18 24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18 25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18 26 26 H 1.08999 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47057 * 299.99876 * 1 2 3 28 28 H 1.08997 * 109.47253 * 59.99818 * 1 2 3 29 29 H 1.09001 * 109.47057 * 240.00124 * 2 1 3 30 30 H 1.08997 * 109.47253 * 120.00182 * 2 1 3 31 31 H 1.08999 * 109.47090 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46574 * 299.99507 * 5 3 2 33 33 H 1.08995 * 109.46967 * 59.99329 * 5 3 2 34 34 H 1.09001 * 109.47223 * 54.99963 * 6 3 2 35 35 H 1.09004 * 109.47186 * 295.00343 * 6 3 2 36 36 H 0.96998 * 120.00191 * 0.02562 * 8 7 6 37 37 H 1.08999 * 109.47299 * 60.00523 * 11 9 8 38 38 H 1.08998 * 109.47401 * 299.99992 * 11 9 8 39 39 H 1.08005 * 119.87130 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.74473 * 179.69460 * 14 13 12 41 41 H 1.08002 * 119.87493 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.12022 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99819 * 355.45620 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4444 -0.1258 7 8 4.0315 2.7899 -0.2429 8 7 5.4376 2.9032 -0.3648 9 6 6.0080 4.1186 -0.4833 10 8 5.3169 5.1152 -0.4851 11 6 7.5045 4.2392 -0.6137 12 6 7.8831 5.6932 -0.7298 13 6 8.0533 6.2660 -1.9698 14 6 8.4080 7.6015 -2.0793 15 6 8.5887 8.3770 -0.9442 16 6 8.4167 7.8273 0.3054 17 6 8.0576 6.4722 0.4288 18 6 7.8786 5.8965 1.7078 19 1 8.0724 4.8448 1.8584 20 6 7.4503 6.6894 2.7783 21 7 7.6001 6.2659 4.0070 22 14 6.6647 8.3527 2.4530 23 1 7.7172 9.3998 2.4221 24 1 5.9602 8.3202 1.1462 25 1 5.6920 8.6603 3.5322 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1252 1.3970 33 1 2.0699 1.5874 2.1491 34 1 3.8570 0.8801 -1.0114 35 1 4.0030 0.9836 0.7596 36 1 5.9903 2.1061 -0.3638 37 1 7.8359 3.7049 -1.5041 38 1 7.9818 3.8091 0.2668 39 1 7.9147 5.6713 -2.8606 40 1 8.5443 8.0413 -3.0562 41 1 8.8647 9.4167 -1.0413 42 1 8.5576 8.4334 1.1882 43 1 7.9471 5.3756 4.1742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794854323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:36 Heat of formation + Delta-G solvation = -37.251894 kcal Electronic energy + Delta-G solvation = -23061.579291 eV Core-core repulsion = 19686.807967 eV Total energy + Delta-G solvation = -3374.771324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.15456 -38.09693 -37.29013 -35.67471 -33.63660 -32.30450 -31.37602 -30.13521 -29.79540 -27.04477 -26.42428 -24.48374 -23.42946 -21.48611 -20.87865 -20.15908 -19.28652 -18.09178 -17.82324 -16.40549 -15.96580 -15.42953 -15.09166 -14.83608 -14.48282 -14.21102 -14.12505 -13.69228 -13.55714 -13.26446 -12.88104 -12.49457 -12.33668 -12.16791 -12.10136 -11.92673 -11.89260 -11.38360 -11.23459 -11.07810 -10.99284 -10.81982 -10.75612 -10.60262 -10.27508 -10.11716 -9.66731 -9.25995 -9.22151 -8.92876 -8.48668 -7.63143 -7.57947 -7.15159 -4.47429 2.13193 2.74011 2.78773 3.29904 3.35806 3.49274 3.71939 4.13930 4.41708 4.58048 4.61779 4.64632 4.95852 4.99308 5.16636 5.22235 5.29215 5.41644 5.44817 5.52040 5.57466 5.71342 5.77661 5.78060 5.80794 5.87039 5.93518 6.08850 6.12931 6.18322 6.23225 6.29222 6.55061 6.77203 7.08391 7.18144 7.37654 7.53603 7.69081 7.72206 7.80599 7.87749 8.03509 8.42722 8.62766 8.83397 8.90990 10.10815 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.004047 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.702652 B = 6917.209901 C = 7807.421870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.081 0.919 5 C -0.150 4.150 6 C 0.037 3.963 7 O -0.148 6.148 8 N -0.612 5.612 9 C 0.526 3.474 10 O -0.498 6.498 11 C -0.055 4.055 12 C -0.177 4.177 13 C -0.064 4.064 14 C -0.246 4.246 15 C -0.074 4.074 16 C -0.244 4.244 17 C 0.116 3.884 18 C -0.512 4.512 19 H 0.075 0.925 20 C 0.048 3.952 21 N -0.821 5.821 22 Si 1.069 2.931 23 H -0.279 1.279 24 H -0.257 1.257 25 H -0.292 1.292 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.399 0.601 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.138 -12.534 -6.559 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.100 0.900 5 C -0.207 4.207 6 C -0.041 4.041 7 O -0.152 6.152 8 N -0.317 5.317 9 C 0.314 3.686 10 O -0.368 6.368 11 C -0.095 4.095 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.266 4.266 15 C -0.092 4.092 16 C -0.263 4.263 17 C 0.113 3.887 18 C -0.541 4.541 19 H 0.093 0.907 20 C -0.171 4.171 21 N -0.444 5.444 22 Si 0.896 3.104 23 H -0.206 1.206 24 H -0.181 1.181 25 H -0.220 1.220 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.238 0.762 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.387 -10.335 -5.713 14.484 hybrid contribution 0.881 -2.278 -0.593 2.513 sum -7.506 -12.613 -6.306 15.975 Atomic orbital electron populations 1.21799 0.95270 1.01633 1.02301 1.21503 0.96437 0.95228 1.02192 1.21110 0.92141 0.96982 1.00196 0.90038 1.21878 1.01195 1.01708 0.95964 1.23004 0.95597 0.84939 1.00576 1.90583 1.03642 1.24545 1.96393 1.48006 0.94517 1.09415 1.79773 1.21382 0.90613 0.80925 0.75699 1.90707 1.63546 1.35790 1.46732 1.20193 0.88672 0.97644 1.03013 1.18929 1.12016 0.93639 0.93299 1.20433 0.97795 0.94747 0.95256 1.20330 1.14828 0.94802 0.96591 1.20621 0.98000 0.97486 0.93100 1.21133 1.11870 0.97000 0.96280 1.17506 0.87394 0.91084 0.92678 1.20537 1.41500 0.98092 0.93976 0.90704 1.27157 0.92746 1.05549 0.91627 1.70573 1.32873 1.19326 1.21635 0.83656 0.76719 0.72994 0.77012 1.20611 1.18136 1.21995 0.92673 0.92187 0.92588 0.91832 0.91669 0.91450 0.92300 0.92706 0.92625 0.92434 0.76236 0.89985 0.88519 0.89046 0.88915 0.88807 0.87707 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.91 5.40 -26.73 -0.14 -1.05 16 3 C -0.08 -0.88 2.63 -90.62 -0.24 -1.12 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.15 -1.70 8.85 37.16 0.33 -1.38 16 6 C 0.04 0.43 5.61 37.16 0.21 0.64 16 7 O -0.15 -2.53 10.64 -29.66 -0.32 -2.85 16 8 N -0.61 -10.15 6.39 31.22 0.20 -9.95 16 9 C 0.53 10.99 7.97 -10.98 -0.09 10.90 16 10 O -0.50 -13.07 16.44 -12.64 -0.21 -13.28 16 11 C -0.06 -1.05 5.36 -29.03 -0.16 -1.20 16 12 C -0.18 -4.12 4.43 -103.91 -0.46 -4.58 16 13 C -0.06 -1.39 9.66 -39.66 -0.38 -1.78 16 14 C -0.25 -5.34 10.05 -39.29 -0.39 -5.73 16 15 C -0.07 -1.67 10.02 -39.66 -0.40 -2.07 16 16 C -0.24 -6.13 7.26 -38.87 -0.28 -6.41 16 17 C 0.12 3.02 5.13 -106.83 -0.55 2.47 16 18 C -0.51 -13.83 8.80 -37.75 -0.33 -14.16 16 19 H 0.07 2.00 6.60 -52.49 -0.35 1.66 16 20 C 0.05 1.32 5.42 -17.34 -0.09 1.22 16 21 N -0.82 -22.67 13.65 55.55 0.76 -21.91 16 22 Si 1.07 26.46 24.89 -169.99 -4.23 22.23 16 23 H -0.28 -6.42 6.45 56.52 0.36 -6.06 16 24 H -0.26 -6.67 7.01 56.52 0.40 -6.27 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 32 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 4.80 8.54 -40.82 -0.35 4.45 16 37 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 38 H 0.10 1.78 6.51 -51.93 -0.34 1.44 16 39 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 42 H 0.11 2.61 4.43 -52.48 -0.23 2.38 16 43 H 0.28 7.51 8.73 -40.82 -0.36 7.16 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -32.94 351.97 -7.73 -40.68 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.62 Total: 4.76 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -2.62 Total: -24.98 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.96 Total: -31.86 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.52 Total: -16.13 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -4.23 Total: 22.23 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.94 -7.73 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794854323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.423 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds