Wall clock time and date at job start Tue Mar 31 2020 07:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 H 1.08997 * 109.47144 * 304.99998 * 3 2 1 5 5 C 1.53004 * 109.47005 * 65.00502 * 3 2 1 6 6 C 1.52999 * 109.47229 * 185.00165 * 3 2 1 7 7 O 1.42900 * 109.47579 * 174.99977 * 6 3 2 8 8 N 1.41590 * 114.00124 * 179.97438 * 7 6 3 9 9 C 1.34784 * 119.99878 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99871 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99906 * 180.02562 * 9 8 7 12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 8 13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9 14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11 15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12 16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9 18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11 19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12 20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12 21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17 23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18 24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18 25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18 26 26 H 1.08999 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47057 * 299.99876 * 1 2 3 28 28 H 1.08997 * 109.47253 * 59.99818 * 1 2 3 29 29 H 1.09001 * 109.47057 * 240.00124 * 2 1 3 30 30 H 1.08997 * 109.47253 * 120.00182 * 2 1 3 31 31 H 1.08999 * 109.47090 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46574 * 299.99507 * 5 3 2 33 33 H 1.08995 * 109.46967 * 59.99329 * 5 3 2 34 34 H 1.09001 * 109.47223 * 54.99963 * 6 3 2 35 35 H 1.09004 * 109.47186 * 295.00343 * 6 3 2 36 36 H 0.96998 * 120.00191 * 0.02562 * 8 7 6 37 37 H 1.08999 * 109.47299 * 60.00523 * 11 9 8 38 38 H 1.08998 * 109.47401 * 299.99992 * 11 9 8 39 39 H 1.08005 * 119.87130 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.74473 * 179.69460 * 14 13 12 41 41 H 1.08002 * 119.87493 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.12022 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99819 * 355.45620 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4444 -0.1258 7 8 4.0315 2.7899 -0.2429 8 7 5.4376 2.9032 -0.3648 9 6 6.0080 4.1186 -0.4833 10 8 5.3169 5.1152 -0.4851 11 6 7.5045 4.2392 -0.6137 12 6 7.8831 5.6932 -0.7298 13 6 8.0533 6.2660 -1.9698 14 6 8.4080 7.6015 -2.0793 15 6 8.5887 8.3770 -0.9442 16 6 8.4167 7.8273 0.3054 17 6 8.0576 6.4722 0.4288 18 6 7.8786 5.8965 1.7078 19 1 8.0724 4.8448 1.8584 20 6 7.4503 6.6894 2.7783 21 7 7.6001 6.2659 4.0070 22 14 6.6647 8.3527 2.4530 23 1 7.7172 9.3998 2.4221 24 1 5.9602 8.3202 1.1462 25 1 5.6920 8.6603 3.5322 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1252 1.3970 33 1 2.0699 1.5874 2.1491 34 1 3.8570 0.8801 -1.0114 35 1 4.0030 0.9836 0.7596 36 1 5.9903 2.1061 -0.3638 37 1 7.8359 3.7049 -1.5041 38 1 7.9818 3.8091 0.2668 39 1 7.9147 5.6713 -2.8606 40 1 8.5443 8.0413 -3.0562 41 1 8.8647 9.4167 -1.0413 42 1 8.5576 8.4334 1.1882 43 1 7.9471 5.3756 4.1742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794854323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:35 Heat of formation + Delta-G solvation = -57.215098 kcal Electronic energy + Delta-G solvation = -23062.444961 eV Core-core repulsion = 19686.807967 eV Total energy + Delta-G solvation = -3375.636993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75433 -39.50690 -38.72618 -36.76755 -35.59241 -33.90525 -32.81492 -31.99257 -30.68528 -28.49445 -27.57584 -26.34765 -24.20105 -23.28325 -22.46868 -21.27152 -20.76195 -20.02246 -19.13522 -17.92529 -17.18696 -17.04884 -16.55304 -16.04928 -15.74514 -15.71358 -15.63612 -15.27063 -14.94143 -14.57936 -14.36324 -13.94758 -13.86069 -13.69588 -13.20742 -13.08839 -12.96267 -12.88068 -12.69059 -12.60112 -12.16630 -11.99108 -11.94073 -11.86386 -11.63605 -11.58626 -11.48231 -11.14536 -10.91833 -10.84853 -9.88399 -9.55581 -9.35178 -9.14473 -6.48106 0.65509 0.91705 1.12599 1.31181 1.52936 1.73020 1.76255 2.15992 2.70796 3.39882 3.57088 3.76093 3.79643 3.94729 4.07191 4.23797 4.26062 4.32386 4.33431 4.48043 4.54106 4.56065 4.57899 4.66350 4.68368 4.75540 4.89705 4.98958 4.99132 5.06541 5.15578 5.15793 5.25724 5.37578 5.47050 5.51944 5.61648 5.82452 5.86379 5.90088 6.03968 6.18953 6.42752 6.50594 6.74827 6.88501 7.42439 8.08075 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.004047 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.702652 B = 6917.209901 C = 7807.421870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.082 4.082 4 H 0.072 0.928 5 C -0.150 4.150 6 C 0.029 3.971 7 O -0.180 6.180 8 N -0.593 5.593 9 C 0.525 3.475 10 O -0.564 6.564 11 C -0.054 4.054 12 C -0.181 4.181 13 C -0.075 4.075 14 C -0.233 4.233 15 C -0.086 4.086 16 C -0.266 4.266 17 C 0.086 3.914 18 C -0.534 4.534 19 H 0.063 0.937 20 C 0.015 3.985 21 N -0.852 5.852 22 Si 1.095 2.905 23 H -0.254 1.254 24 H -0.280 1.280 25 H -0.288 1.288 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.422 0.578 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 -13.872 -9.175 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.102 4.102 4 H 0.091 0.909 5 C -0.207 4.207 6 C -0.047 4.047 7 O -0.185 6.185 8 N -0.298 5.298 9 C 0.314 3.686 10 O -0.439 6.439 11 C -0.094 4.094 12 C -0.183 4.183 13 C -0.093 4.093 14 C -0.251 4.251 15 C -0.104 4.104 16 C -0.285 4.285 17 C 0.084 3.916 18 C -0.564 4.564 19 H 0.081 0.919 20 C -0.198 4.198 21 N -0.478 5.478 22 Si 0.920 3.080 23 H -0.180 1.180 24 H -0.206 1.206 25 H -0.215 1.215 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.265 0.735 37 H 0.150 0.850 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.116 0.884 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.248 -11.738 -8.326 16.587 hybrid contribution 0.827 -1.956 -0.056 2.125 sum -7.421 -13.695 -8.382 17.688 Atomic orbital electron populations 1.21813 0.94757 1.02461 1.02075 1.21471 0.96800 0.93125 1.03223 1.21157 0.91303 0.98691 0.99035 0.90922 1.21868 1.02172 0.99629 0.97007 1.23353 0.96236 0.82879 1.02276 1.90589 1.03179 1.28155 1.96553 1.47599 0.95254 1.09351 1.77609 1.21583 0.91095 0.81091 0.74816 1.90680 1.65031 1.38103 1.50115 1.20266 0.87645 0.95962 1.05502 1.19435 1.10190 0.95516 0.93142 1.20935 0.96935 0.95452 0.96005 1.20908 1.11560 0.94769 0.97910 1.21025 0.97608 0.99315 0.92456 1.21314 1.12819 0.96989 0.97410 1.17809 0.88389 0.92157 0.93293 1.20513 1.43299 0.97639 0.94947 0.91891 1.27796 0.92997 1.07286 0.91761 1.70608 1.35726 1.19520 1.21916 0.83290 0.76772 0.72345 0.75613 1.17991 1.20591 1.21549 0.91314 0.92557 0.92743 0.90470 0.90936 0.95128 0.90800 0.92250 0.90035 0.91372 0.73495 0.84957 0.88277 0.85284 0.85231 0.85749 0.88425 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 71.98 0.70 -1.19 16 2 C -0.11 -1.44 5.40 30.59 0.17 -1.27 16 3 C -0.08 -1.61 2.63 -10.79 -0.03 -1.64 16 4 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.15 -3.40 8.85 71.98 0.64 -2.76 16 6 C 0.03 0.63 5.61 71.98 0.40 1.04 16 7 O -0.18 -6.08 10.64 -21.37 -0.23 -6.31 16 8 N -0.59 -18.97 6.39 -173.52 -1.11 -20.08 16 9 C 0.53 21.64 7.97 87.66 0.70 22.34 16 10 O -0.56 -30.13 16.44 14.37 0.24 -29.90 16 11 C -0.05 -1.96 5.36 29.10 0.16 -1.81 16 12 C -0.18 -8.17 4.43 -19.40 -0.09 -8.26 16 13 C -0.08 -3.02 9.66 22.22 0.21 -2.81 16 14 C -0.23 -9.20 10.05 22.46 0.23 -8.98 16 15 C -0.09 -3.70 10.02 22.22 0.22 -3.47 16 16 C -0.27 -13.31 7.26 22.73 0.16 -13.14 16 17 C 0.09 4.50 5.13 -21.29 -0.11 4.39 16 18 C -0.53 -29.84 8.80 23.46 0.21 -29.63 16 19 H 0.06 3.53 6.60 -2.91 -0.02 3.51 16 20 C 0.01 0.84 5.42 85.26 0.46 1.31 16 21 N -0.85 -49.09 13.65 21.82 0.30 -48.79 16 22 Si 1.10 55.18 24.89 68.60 1.71 56.89 16 23 H -0.25 -11.58 6.45 99.48 0.64 -10.94 16 24 H -0.28 -15.01 7.01 99.48 0.70 -14.31 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.73 6.57 -2.39 -0.02 0.71 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.03 0.90 7.82 -2.39 -0.02 0.88 16 32 H 0.07 1.41 6.56 -2.39 -0.02 1.39 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.42 9.19 8.54 -92.71 -0.79 8.40 16 37 H 0.13 3.40 8.06 -2.39 -0.02 3.38 16 38 H 0.10 3.57 6.51 -2.39 -0.02 3.56 16 39 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 40 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 42 H 0.10 4.91 4.43 -2.91 -0.01 4.89 16 43 H 0.28 15.56 8.73 -92.71 -0.81 14.75 16 Total: -1.00 -75.05 351.97 5.04 -70.02 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.10 Total: 24.07 kcal Atomic # 6 Polarization: -49.92 SS G_CDS: 4.03 Total: -45.89 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.81 Total: -68.88 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: 0.01 Total: -36.21 kcal Atomic # 14 Polarization: 55.18 SS G_CDS: 1.71 Total: 56.89 kcal Total: -75.05 5.04 -70.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794854323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.801 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds