Wall clock time and date at job start Tue Mar 31 2020 07:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47224 * 2 1 4 4 H 1.09007 * 109.46963 * 54.99882 * 3 2 1 5 5 N 1.46491 * 109.47221 * 294.99923 * 3 2 1 6 6 C 1.34777 * 120.00397 * 153.62403 * 5 3 2 7 7 O 1.21280 * 119.99850 * 0.02562 * 6 5 3 8 8 C 1.50703 * 120.00333 * 179.97438 * 6 5 3 9 9 C 1.53001 * 109.46822 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46700 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00156 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99873 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 119.99981 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47424 * 89.99937 * 14 12 10 16 16 H 1.48504 * 109.47387 * 210.00371 * 14 12 10 17 17 H 1.48499 * 109.47207 * 329.99777 * 14 12 10 18 18 C 1.50706 * 109.46977 * 174.99479 * 3 2 1 19 19 C 1.38162 * 120.02368 * 93.33910 * 18 3 2 20 20 C 1.38244 * 120.05334 * 179.97438 * 19 18 3 21 21 C 1.38286 * 120.11266 * 0.02562 * 20 19 18 22 22 C 1.38126 * 120.05617 * 0.02562 * 21 20 19 23 23 C 1.38712 * 120.02855 * 273.35713 * 18 3 2 24 24 O 1.35901 * 120.05723 * 359.95749 * 23 18 3 25 25 C 1.42893 * 117.00065 * 180.02562 * 24 23 18 26 26 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47340 * 300.00602 * 1 2 3 28 28 H 1.09000 * 109.46632 * 59.99932 * 1 2 3 29 29 H 1.09002 * 109.47690 * 239.99775 * 2 1 3 30 30 H 1.09000 * 109.46632 * 120.00068 * 2 1 3 31 31 H 0.97007 * 119.99982 * 333.62014 * 5 3 2 32 32 H 1.08993 * 109.47289 * 300.00144 * 8 6 5 33 33 H 1.08997 * 109.46718 * 60.00209 * 8 6 5 34 34 H 1.08993 * 109.47190 * 300.00063 * 9 8 6 35 35 H 1.08997 * 109.47420 * 60.00496 * 9 8 6 36 36 H 0.97002 * 119.99582 * 179.97438 * 13 12 10 37 37 H 1.08001 * 119.97612 * 0.02562 * 19 18 3 38 38 H 1.08000 * 119.94521 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.97208 * 179.74473 * 21 20 19 40 40 H 1.08001 * 120.02764 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47443 * 180.02562 * 25 24 23 42 42 H 1.09006 * 109.47043 * 300.00125 * 25 24 23 43 43 H 1.08993 * 109.47468 * 59.99927 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 1.4987 3.4358 -1.2926 7 8 1.6815 4.0980 -0.2931 8 6 1.1006 4.1096 -2.5804 9 6 0.9964 5.6193 -2.3550 10 6 0.5978 6.2931 -3.6427 11 1 0.4354 5.7035 -4.5329 12 6 0.4413 7.6623 -3.6847 13 7 0.0939 8.2503 -4.8086 14 14 0.7229 8.6821 -2.1453 15 1 2.1475 9.0962 -2.0794 16 1 -0.1420 9.8887 -2.1857 17 1 0.3868 7.8724 -0.9467 18 6 3.5420 1.4442 0.1240 19 6 4.3292 1.4799 -1.0108 20 6 5.7071 1.4821 -0.8978 21 6 6.3008 1.4480 0.3506 22 6 5.5182 1.4112 1.4881 23 6 4.1351 1.4096 1.3774 24 8 3.3628 1.3749 2.4951 25 6 4.0418 1.3410 3.7520 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.5067 1.5679 -2.0513 32 1 1.8521 3.9076 -3.3436 33 1 0.1358 3.7235 -2.9093 34 1 0.2452 5.8217 -1.5917 35 1 1.9614 6.0051 -2.0264 36 1 -0.0165 9.2136 -4.8380 37 1 3.8679 1.5070 -1.9870 38 1 6.3208 1.5105 -1.7860 39 1 7.3774 1.4456 0.4361 40 1 5.9824 1.3841 2.4629 41 1 3.3103 1.3150 4.5596 42 1 4.6695 0.4513 3.8020 43 1 4.6636 2.2304 3.8532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812465672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:51 Heat of formation + Delta-G solvation = -65.567532 kcal Electronic energy + Delta-G solvation = -23373.729338 eV Core-core repulsion = 19997.730156 eV Total energy + Delta-G solvation = -3375.999182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57718 -39.18025 -37.49536 -35.95065 -33.42330 -32.21067 -31.33300 -30.92493 -30.17312 -27.54603 -26.67846 -25.37365 -22.49002 -22.21141 -21.59399 -20.40621 -19.62300 -18.20993 -17.17539 -16.55078 -16.19320 -15.91657 -15.80979 -15.27532 -14.81224 -14.56908 -14.14212 -13.93877 -13.89337 -13.68965 -13.30365 -12.89119 -12.63516 -12.52479 -12.33231 -12.26587 -11.90497 -11.50428 -11.38888 -11.33214 -11.21879 -10.99978 -10.95218 -10.83437 -10.10957 -9.99466 -9.74551 -9.18713 -9.12337 -8.94480 -8.80424 -8.47328 -8.20622 -6.00042 -3.98308 1.24644 1.37929 3.15505 3.21608 3.40610 3.46738 3.50433 3.58833 3.71204 4.54176 4.56290 4.71970 4.84114 4.90421 4.96615 4.98871 5.02649 5.14246 5.27817 5.32630 5.35780 5.37356 5.52213 5.57473 5.65922 5.74127 5.82102 5.91564 6.04799 6.12748 6.15266 6.17741 6.23232 6.35278 6.47091 6.67697 6.74831 6.81780 7.28017 7.41906 7.48680 7.81518 7.88345 8.54132 8.76196 9.03488 9.63487 11.12857 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.003976 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.510650 B = 7040.472873 C = 7424.775214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.192 3.808 4 H 0.100 0.900 5 N -0.735 5.735 6 C 0.511 3.489 7 O -0.535 6.535 8 C -0.122 4.122 9 C 0.002 3.998 10 C -0.523 4.523 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.905 5.905 14 Si 0.876 3.124 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.261 1.261 18 C -0.118 4.118 19 C -0.068 4.068 20 C -0.156 4.156 21 C -0.086 4.086 22 C -0.210 4.210 23 C 0.135 3.865 24 O -0.312 6.312 25 C 0.028 3.972 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.397 0.603 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.234 -21.176 13.051 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.086 3.914 4 H 0.118 0.882 5 N -0.389 5.389 6 C 0.299 3.701 7 O -0.410 6.410 8 C -0.162 4.162 9 C -0.036 4.036 10 C -0.561 4.561 11 H 0.091 0.909 12 C -0.132 4.132 13 N -0.543 5.543 14 Si 0.704 3.296 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.120 4.120 19 C -0.086 4.086 20 C -0.174 4.174 21 C -0.104 4.104 22 C -0.229 4.229 23 C 0.089 3.911 24 O -0.225 6.225 25 C -0.067 4.067 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.231 0.769 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.117 0.883 42 H 0.071 0.929 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.093 -20.496 13.734 26.294 hybrid contribution 0.508 0.445 0.470 0.823 sum 9.601 -20.051 14.204 26.382 Atomic orbital electron populations 1.21765 0.95014 1.01464 1.02614 1.21742 0.96483 0.94842 1.02791 1.19602 0.89182 0.93560 0.89007 0.88214 1.46239 1.72319 1.07942 1.12386 1.21518 0.75448 0.81253 0.91889 1.90659 1.49473 1.63920 1.36927 1.21661 1.02188 0.99449 0.92884 1.19357 0.97477 0.89156 0.97621 1.21126 1.46852 0.92502 0.95662 0.90948 1.24962 0.94404 0.97911 0.95922 1.69917 1.48296 1.10166 1.25971 0.86809 0.78383 0.79753 0.84698 1.20279 1.21463 1.18522 1.19658 0.96661 1.05371 0.90354 1.20831 0.93247 0.96729 0.97818 1.21051 0.94816 1.04023 0.97545 1.20898 0.99462 0.97952 0.92091 1.21166 0.92456 1.09508 0.99746 1.18768 0.89468 0.96510 0.86356 1.86087 1.34966 1.88485 1.12964 1.23034 0.98823 1.01129 0.83720 0.92689 0.92515 0.92207 0.91544 0.90638 0.76856 0.89752 0.89661 0.95864 0.96343 0.92764 0.85395 0.85925 0.86034 0.85662 0.88298 0.92860 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.80 37.16 0.36 -1.08 16 2 C -0.12 -1.20 5.46 -26.73 -0.15 -1.35 16 3 C 0.19 2.55 1.94 -69.08 -0.13 2.41 16 4 H 0.10 1.62 7.03 -51.92 -0.37 1.25 16 5 N -0.74 -10.06 3.30 -54.93 -0.18 -10.24 16 6 C 0.51 9.51 7.80 -10.98 -0.09 9.42 16 7 O -0.53 -12.32 15.62 5.56 0.09 -12.23 16 8 C -0.12 -2.40 5.64 -27.88 -0.16 -2.55 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 10 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 11 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 14 Si 0.88 23.01 27.47 -169.99 -4.67 18.34 16 15 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 17 H -0.26 -6.85 6.54 56.52 0.37 -6.48 16 18 C -0.12 -1.61 5.03 -104.47 -0.53 -2.14 16 19 C -0.07 -0.86 9.32 -39.61 -0.37 -1.23 16 20 C -0.16 -1.80 10.04 -39.56 -0.40 -2.19 16 21 C -0.09 -0.93 10.04 -39.60 -0.40 -1.33 16 22 C -0.21 -2.39 9.04 -39.43 -0.36 -2.75 16 23 C 0.13 1.78 6.66 -39.22 -0.26 1.52 16 24 O -0.31 -3.89 9.60 -19.43 -0.19 -4.08 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.40 4.18 8.62 -40.82 -0.35 3.83 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 35 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.13 1.47 7.31 -52.49 -0.38 1.08 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 43 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -35.68 356.17 -7.59 -43.27 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.78 Total: 0.76 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.00 Total: -13.64 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.59 Total: -37.79 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.10 Total: -16.31 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.67 Total: 18.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.68 -7.59 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812465672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.295 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds