Wall clock time and date at job start Tue Mar 31 2020 07:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47224 * 2 1 4 4 H 1.09007 * 109.46963 * 54.99882 * 3 2 1 5 5 N 1.46491 * 109.47221 * 294.99923 * 3 2 1 6 6 C 1.34777 * 120.00397 * 153.62403 * 5 3 2 7 7 O 1.21280 * 119.99850 * 0.02562 * 6 5 3 8 8 C 1.50703 * 120.00333 * 179.97438 * 6 5 3 9 9 C 1.53001 * 109.46822 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46700 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00156 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99873 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 119.99981 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47424 * 89.99937 * 14 12 10 16 16 H 1.48504 * 109.47387 * 210.00371 * 14 12 10 17 17 H 1.48499 * 109.47207 * 329.99777 * 14 12 10 18 18 C 1.50706 * 109.46977 * 174.99479 * 3 2 1 19 19 C 1.38162 * 120.02368 * 93.33910 * 18 3 2 20 20 C 1.38244 * 120.05334 * 179.97438 * 19 18 3 21 21 C 1.38286 * 120.11266 * 0.02562 * 20 19 18 22 22 C 1.38126 * 120.05617 * 0.02562 * 21 20 19 23 23 C 1.38712 * 120.02855 * 273.35713 * 18 3 2 24 24 O 1.35901 * 120.05723 * 359.95749 * 23 18 3 25 25 C 1.42893 * 117.00065 * 180.02562 * 24 23 18 26 26 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47340 * 300.00602 * 1 2 3 28 28 H 1.09000 * 109.46632 * 59.99932 * 1 2 3 29 29 H 1.09002 * 109.47690 * 239.99775 * 2 1 3 30 30 H 1.09000 * 109.46632 * 120.00068 * 2 1 3 31 31 H 0.97007 * 119.99982 * 333.62014 * 5 3 2 32 32 H 1.08993 * 109.47289 * 300.00144 * 8 6 5 33 33 H 1.08997 * 109.46718 * 60.00209 * 8 6 5 34 34 H 1.08993 * 109.47190 * 300.00063 * 9 8 6 35 35 H 1.08997 * 109.47420 * 60.00496 * 9 8 6 36 36 H 0.97002 * 119.99582 * 179.97438 * 13 12 10 37 37 H 1.08001 * 119.97612 * 0.02562 * 19 18 3 38 38 H 1.08000 * 119.94521 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.97208 * 179.74473 * 21 20 19 40 40 H 1.08001 * 120.02764 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47443 * 180.02562 * 25 24 23 42 42 H 1.09006 * 109.47043 * 300.00125 * 25 24 23 43 43 H 1.08993 * 109.47468 * 59.99927 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 1.4987 3.4358 -1.2926 7 8 1.6815 4.0980 -0.2931 8 6 1.1006 4.1096 -2.5804 9 6 0.9964 5.6193 -2.3550 10 6 0.5978 6.2931 -3.6427 11 1 0.4354 5.7035 -4.5329 12 6 0.4413 7.6623 -3.6847 13 7 0.0939 8.2503 -4.8086 14 14 0.7229 8.6821 -2.1453 15 1 2.1475 9.0962 -2.0794 16 1 -0.1420 9.8887 -2.1857 17 1 0.3868 7.8724 -0.9467 18 6 3.5420 1.4442 0.1240 19 6 4.3292 1.4799 -1.0108 20 6 5.7071 1.4821 -0.8978 21 6 6.3008 1.4480 0.3506 22 6 5.5182 1.4112 1.4881 23 6 4.1351 1.4096 1.3774 24 8 3.3628 1.3749 2.4951 25 6 4.0418 1.3410 3.7520 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.5067 1.5679 -2.0513 32 1 1.8521 3.9076 -3.3436 33 1 0.1358 3.7235 -2.9093 34 1 0.2452 5.8217 -1.5917 35 1 1.9614 6.0051 -2.0264 36 1 -0.0165 9.2136 -4.8380 37 1 3.8679 1.5070 -1.9870 38 1 6.3208 1.5105 -1.7860 39 1 7.3774 1.4456 0.4361 40 1 5.9824 1.3841 2.4629 41 1 3.3103 1.3150 4.5596 42 1 4.6695 0.4513 3.8020 43 1 4.6636 2.2304 3.8532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812465672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:50 Heat of formation + Delta-G solvation = -88.329373 kcal Electronic energy + Delta-G solvation = -23374.716365 eV Core-core repulsion = 19997.730156 eV Total energy + Delta-G solvation = -3376.986210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55243 -40.47421 -38.42851 -37.05206 -35.52047 -33.63444 -32.88139 -32.04564 -31.02097 -28.51712 -28.01749 -26.69381 -23.54059 -23.27600 -22.93932 -21.55162 -21.16144 -19.23478 -19.02960 -17.70876 -17.37079 -17.17005 -16.64525 -16.44115 -16.23392 -16.09865 -15.42708 -15.02680 -14.93982 -14.70094 -14.58619 -14.49123 -14.17855 -13.85696 -13.39961 -13.33279 -13.04837 -12.91557 -12.65639 -12.35319 -12.23547 -12.05185 -11.99256 -11.96706 -11.84207 -11.76954 -11.73626 -11.39469 -10.78285 -10.72463 -10.13045 -9.78394 -9.09345 -8.31810 -6.34022 0.35750 0.48969 1.31513 1.33479 1.49040 1.73951 2.27059 2.34388 2.39372 2.80466 3.04013 3.67300 3.92181 3.96926 4.07156 4.13177 4.16753 4.28403 4.37004 4.38824 4.41698 4.47606 4.51030 4.58568 4.67934 4.70961 4.80082 4.88287 4.99901 5.03249 5.11485 5.18990 5.28426 5.35767 5.39218 5.44647 5.45474 5.57288 5.61356 5.69342 5.86844 6.23937 6.45383 6.64406 6.72250 7.31344 7.37940 8.83900 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.003976 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.510650 B = 7040.472873 C = 7424.775214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C 0.195 3.805 4 H 0.066 0.934 5 N -0.710 5.710 6 C 0.516 3.484 7 O -0.584 6.584 8 C -0.116 4.116 9 C 0.006 3.994 10 C -0.527 4.527 11 H 0.053 0.947 12 C 0.016 3.984 13 N -0.942 5.942 14 Si 0.935 3.065 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.265 1.265 18 C -0.143 4.143 19 C -0.083 4.083 20 C -0.165 4.165 21 C -0.088 4.088 22 C -0.215 4.215 23 C 0.116 3.884 24 O -0.334 6.334 25 C 0.020 3.980 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.416 0.584 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.007 0.993 35 H 0.005 0.995 36 H 0.267 0.733 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.444 -22.785 13.780 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C 0.091 3.909 4 H 0.084 0.916 5 N -0.363 5.363 6 C 0.305 3.695 7 O -0.464 6.464 8 C -0.155 4.155 9 C -0.032 4.032 10 C -0.565 4.565 11 H 0.071 0.929 12 C -0.182 4.182 13 N -0.583 5.583 14 Si 0.760 3.240 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.145 4.145 19 C -0.101 4.101 20 C -0.183 4.183 21 C -0.106 4.106 22 C -0.233 4.233 23 C 0.070 3.930 24 O -0.248 6.248 25 C -0.075 4.075 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.253 0.747 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.133 0.867 42 H 0.091 0.909 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.305 -22.164 14.444 28.392 hybrid contribution 0.161 0.870 0.240 0.917 sum 10.466 -21.295 14.685 27.904 Atomic orbital electron populations 1.21766 0.94673 1.02541 1.01759 1.21686 0.96599 0.92610 1.03875 1.19599 0.89558 0.94742 0.87050 0.91608 1.45938 1.70309 1.06395 1.13636 1.21208 0.75162 0.82566 0.90600 1.90646 1.52101 1.65365 1.38279 1.21497 1.04030 0.95865 0.94141 1.19201 0.95911 0.92933 0.95144 1.21430 1.46048 0.92663 0.96367 0.92924 1.25750 0.94446 0.99318 0.98638 1.70019 1.49647 1.10785 1.27859 0.85883 0.78767 0.78472 0.80906 1.19470 1.20164 1.18926 1.19773 0.96566 1.06873 0.91239 1.21024 0.94020 0.97210 0.97831 1.21369 0.94631 1.03539 0.98745 1.21292 1.00948 0.96706 0.91642 1.21487 0.91887 1.08775 1.01163 1.19026 0.90396 0.97036 0.86545 1.86058 1.36187 1.88538 1.14013 1.23302 0.99616 1.02074 0.82477 0.90646 0.93909 0.92529 0.89561 0.90336 0.74664 0.87836 0.87820 0.97444 0.97677 0.92370 0.84715 0.84017 0.83281 0.83471 0.86727 0.90947 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.80 71.98 0.71 -1.95 16 2 C -0.11 -2.03 5.46 30.59 0.17 -1.86 16 3 C 0.20 5.11 1.94 44.25 0.09 5.20 16 4 H 0.07 2.20 7.03 -2.38 -0.02 2.19 16 5 N -0.71 -18.68 3.30 -446.10 -1.47 -20.15 16 6 C 0.52 19.03 7.80 87.66 0.68 19.72 16 7 O -0.58 -27.36 15.62 -3.03 -0.05 -27.41 16 8 C -0.12 -4.45 5.64 29.85 0.17 -4.28 16 9 C 0.01 0.31 3.33 29.85 0.10 0.41 16 10 C -0.53 -30.81 9.66 25.60 0.25 -30.56 16 11 H 0.05 3.21 7.99 -2.91 -0.02 3.19 16 12 C 0.02 0.98 5.47 84.65 0.46 1.44 16 13 N -0.94 -59.49 13.96 21.45 0.30 -59.19 16 14 Si 0.93 47.77 27.47 68.60 1.88 49.65 16 15 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.26 -13.60 6.54 99.48 0.65 -12.95 16 18 C -0.14 -3.80 5.03 -19.77 -0.10 -3.90 16 19 C -0.08 -1.99 9.32 22.25 0.21 -1.78 16 20 C -0.16 -3.47 10.04 22.28 0.22 -3.25 16 21 C -0.09 -1.71 10.04 22.25 0.22 -1.49 16 22 C -0.21 -4.52 9.04 22.37 0.20 -4.32 16 23 C 0.12 2.98 6.66 22.51 0.15 3.13 16 24 O -0.33 -8.27 9.60 -92.43 -0.89 -9.16 16 25 C 0.02 0.30 9.81 113.37 1.11 1.41 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.03 7.75 -2.39 -0.02 1.01 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.42 7.88 8.62 -92.70 -0.80 7.08 16 32 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 33 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 35 H 0.00 0.26 7.53 -2.39 -0.02 0.24 16 36 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.14 2.87 7.31 -2.91 -0.02 2.85 16 38 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 0.80 7.66 -2.38 -0.02 0.78 16 43 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 Total: -1.00 -78.24 356.17 4.56 -73.68 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.14 Total: 14.66 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.64 Total: -22.08 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.17 Total: -79.34 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.93 Total: -36.57 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.88 Total: 49.65 kcal Total: -78.24 4.56 -73.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812465672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.654 kcal (2) G-P(sol) polarization free energy of solvation -78.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds