Wall clock time and date at job start Tue Mar 31 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35619 * 119.99964 * 2 1 4 4 C 1.41553 * 120.00102 * 180.02562 * 3 2 1 5 5 O 1.21782 * 119.99652 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00406 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00212 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47293 * 89.99653 * 7 6 4 9 9 H 1.08000 * 120.00290 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99814 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00245 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99747 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47776 * 59.99686 * 12 10 8 14 14 H 1.48501 * 109.47393 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47213 * 299.99418 * 12 10 8 16 16 C 1.46502 * 119.99726 * 359.97438 * 6 4 3 17 17 C 1.52996 * 109.47041 * 89.99905 * 16 6 4 18 18 C 1.52999 * 109.46983 * 65.00268 * 17 16 6 19 19 C 1.52998 * 109.46776 * 184.99802 * 17 16 6 20 20 C 1.41608 * 119.99771 * 180.02562 * 2 1 3 21 21 C 1.37952 * 126.10459 * 294.70782 * 20 2 1 22 22 C 1.40320 * 106.52753 * 179.90907 * 21 20 2 23 23 C 1.35150 * 107.20525 * 0.36237 * 22 21 20 24 24 O 1.34019 * 109.03667 * 359.77198 * 23 22 21 25 25 H 1.09002 * 109.47152 * 269.99840 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.99941 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.99922 * 1 2 3 28 28 H 1.07996 * 120.00270 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47271 * 210.00096 * 7 6 4 30 30 H 1.09004 * 109.47041 * 329.99694 * 7 6 4 31 31 H 0.97006 * 120.00459 * 179.97438 * 11 10 8 32 32 H 1.09006 * 109.46998 * 210.00440 * 16 6 4 33 33 H 1.09008 * 109.46880 * 330.00123 * 16 6 4 34 34 H 1.08996 * 109.47611 * 304.99908 * 17 16 6 35 35 H 1.09006 * 109.47002 * 299.99779 * 18 17 16 36 36 H 1.08996 * 109.47241 * 59.99413 * 18 17 16 37 37 H 1.09003 * 109.47260 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47266 * 60.00358 * 19 17 16 39 39 H 1.09003 * 109.47010 * 179.97438 * 19 17 16 40 40 H 1.08998 * 109.47463 * 299.99694 * 19 17 16 41 41 H 1.07995 * 126.73345 * 0.02810 * 21 20 2 42 42 H 1.08001 * 126.39363 * 180.15477 * 22 21 20 43 43 H 1.07999 * 125.48031 * 179.77948 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 3.6006 1.1745 -0.0005 5 8 4.2095 0.1198 -0.0015 6 7 4.2746 2.3417 0.0000 7 6 5.7396 2.3417 -0.0012 8 6 6.2408 2.3429 -1.4223 9 1 5.5385 2.3440 -2.2427 10 6 7.5962 2.3425 -1.6752 11 7 8.4516 2.3417 -0.6763 12 14 8.2176 2.3447 -3.4369 13 1 7.7227 3.5584 -4.1349 14 1 9.7026 2.3433 -3.4381 15 1 7.7215 1.1334 -4.1383 16 6 3.5421 3.6105 0.0005 17 6 3.2871 4.0515 1.4432 18 6 4.6217 4.3543 2.1273 19 6 2.4158 5.3091 1.4455 20 6 2.2150 -1.2264 -0.0005 21 6 2.2180 -2.1638 1.0116 22 6 3.0475 -3.2113 0.5831 23 6 3.5138 -2.8769 -0.6406 24 8 3.0121 -1.6840 -0.9887 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 -0.8900 -0.5139 27 1 -0.3633 0.8900 -0.5138 28 1 1.6452 2.1098 -0.0004 29 1 6.1034 3.2312 0.5132 30 1 6.1033 1.4512 0.5117 31 1 9.4052 2.3411 -0.8542 32 1 4.1312 4.3703 -0.5130 33 1 2.5896 3.4803 -0.5134 34 1 2.7754 3.2540 1.9819 35 1 5.2424 3.4583 2.1256 36 1 5.1334 5.1518 1.5886 37 1 4.4401 4.6681 3.1553 38 1 1.4650 5.0934 0.9581 39 1 2.2338 5.6231 2.4734 40 1 2.9276 6.1067 0.9069 41 1 1.6848 -2.1040 1.9488 42 1 3.2739 -4.1143 1.1305 43 1 4.1831 -3.4750 -1.2413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824234928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:00 Heat of formation + Delta-G solvation = -6.443677 kcal Electronic energy + Delta-G solvation = -24098.519650 eV Core-core repulsion = 20725.084270 eV Total energy + Delta-G solvation = -3373.435379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95612 -39.36739 -36.52273 -35.02252 -33.44257 -32.38241 -32.25804 -29.03236 -28.33711 -27.07730 -26.79471 -25.36132 -23.31958 -21.91793 -21.15511 -20.22991 -19.46413 -18.30370 -16.80512 -16.50029 -16.28984 -15.48500 -15.27786 -14.49977 -14.46316 -14.35634 -13.72914 -13.40096 -13.19442 -13.06358 -12.87195 -12.56013 -12.42874 -12.21676 -12.12424 -12.05179 -12.02170 -11.71107 -11.43197 -11.26188 -10.97651 -10.88565 -10.65526 -10.45889 -10.22326 -10.07916 -9.57074 -9.41552 -9.15822 -8.90462 -8.37657 -7.71725 -7.46236 -5.99502 -4.03504 1.15298 2.32437 3.05266 3.33950 3.38119 3.41756 3.63446 4.04100 4.12158 4.49131 4.95986 4.99069 5.11627 5.20573 5.33687 5.35123 5.37410 5.41461 5.44809 5.51405 5.58516 5.74220 5.79096 5.86026 5.91065 6.05103 6.12334 6.17134 6.19676 6.22066 6.32528 6.34605 6.40643 6.60526 6.64719 6.73032 6.95658 7.19649 7.51174 7.62540 7.64140 7.97542 8.30339 8.50141 8.95927 9.17732 9.60976 11.08199 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.006583 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.576152 B = 4252.661203 C = 6075.013166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.000 4.000 3 C -0.178 4.178 4 C 0.525 3.475 5 O -0.524 6.524 6 N -0.589 5.589 7 C 0.244 3.756 8 C -0.523 4.523 9 H 0.055 0.945 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.114 3.886 17 C -0.114 4.114 18 C -0.148 4.148 19 C -0.143 4.143 20 C 0.044 3.956 21 C -0.203 4.203 22 C -0.220 4.220 23 C -0.029 4.029 24 O -0.137 6.137 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.263 0.737 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.263 -1.036 3.987 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.002 4.002 3 C -0.199 4.199 4 C 0.314 3.686 5 O -0.403 6.403 6 N -0.319 5.319 7 C 0.125 3.875 8 C -0.562 4.562 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.203 1.203 16 C -0.010 4.010 17 C -0.134 4.134 18 C -0.205 4.205 19 C -0.201 4.201 20 C -0.007 4.007 21 C -0.223 4.223 22 C -0.239 4.239 23 C -0.099 4.099 24 O -0.031 6.031 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.151 0.849 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.632 -1.402 3.746 16.136 hybrid contribution 0.654 0.049 -0.746 0.993 sum -14.978 -1.353 3.000 15.336 Atomic orbital electron populations 1.20852 0.89476 1.03396 1.02914 1.19148 0.95063 0.89494 0.96533 1.22604 0.95795 0.98044 1.03408 1.16959 0.87682 0.84713 0.79200 1.90828 1.69935 1.30086 1.49485 1.48123 1.09409 1.03925 1.70472 1.19355 0.72346 0.98494 0.97287 1.21420 0.91640 1.50737 0.92410 0.92666 1.24906 0.96673 0.95217 0.97231 1.69920 1.02213 1.50676 1.30685 0.86602 0.77516 0.78593 0.84962 1.20293 1.21210 1.20261 1.21572 0.96606 0.87490 0.95326 1.21601 0.96943 0.97553 0.97288 1.21922 0.96859 1.02730 0.99031 1.21781 0.99182 0.97661 1.01463 1.19270 0.95903 0.95430 0.90125 1.21818 1.05722 0.94798 0.99939 1.21465 1.03858 1.01512 0.97100 1.23940 1.01510 0.86294 0.98138 1.84201 1.47806 1.30317 1.40743 0.90292 0.90976 0.90549 0.84890 0.94275 0.94141 0.92766 0.89984 0.91680 0.91528 0.91287 0.92532 0.93670 0.92962 0.92859 0.92499 0.84236 0.84164 0.78955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.02 36.01 0.36 -0.74 16 2 C 0.00 0.00 5.78 -104.27 -0.60 -0.60 16 3 C -0.18 -2.93 8.76 -39.26 -0.34 -3.27 16 4 C 0.52 11.43 7.41 -15.00 -0.11 11.32 16 5 O -0.52 -13.53 12.38 -18.28 -0.23 -13.76 16 6 N -0.59 -12.68 2.28 -178.49 -0.41 -13.09 16 7 C 0.24 6.44 4.23 -5.20 -0.02 6.41 16 8 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 11 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 12 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 C 0.11 1.89 4.58 -4.04 -0.02 1.87 16 17 C -0.11 -1.60 3.13 -90.62 -0.28 -1.88 16 18 C -0.15 -2.31 8.18 37.16 0.30 -2.01 16 19 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 20 C 0.04 0.78 4.38 -38.40 -0.17 0.61 16 21 C -0.20 -3.31 10.90 -38.90 -0.42 -3.74 16 22 C -0.22 -3.48 10.87 -39.90 -0.43 -3.91 16 23 C -0.03 -0.49 12.06 29.63 0.36 -0.14 16 24 O -0.14 -2.75 8.90 -18.72 -0.17 -2.92 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.13 1.71 6.08 -52.49 -0.32 1.39 16 29 H 0.04 1.03 5.98 -51.93 -0.31 0.72 16 30 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 33 H 0.06 0.91 6.08 -51.92 -0.32 0.59 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.29 5.90 -51.93 -0.31 0.99 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.19 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -34.78 355.05 -7.87 -42.65 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.67 Total: 1.70 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.46 Total: -11.01 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.33 Total: -39.29 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.39 Total: -16.68 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.78 -7.87 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.208 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds