Wall clock time and date at job start Tue Mar 31 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35619 * 119.99964 * 2 1 4 4 C 1.41553 * 120.00102 * 180.02562 * 3 2 1 5 5 O 1.21782 * 119.99652 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00406 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00212 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47293 * 89.99653 * 7 6 4 9 9 H 1.08000 * 120.00290 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99814 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00245 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99747 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47776 * 59.99686 * 12 10 8 14 14 H 1.48501 * 109.47393 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47213 * 299.99418 * 12 10 8 16 16 C 1.46502 * 119.99726 * 359.97438 * 6 4 3 17 17 C 1.52996 * 109.47041 * 89.99905 * 16 6 4 18 18 C 1.52999 * 109.46983 * 65.00268 * 17 16 6 19 19 C 1.52998 * 109.46776 * 184.99802 * 17 16 6 20 20 C 1.41608 * 119.99771 * 180.02562 * 2 1 3 21 21 C 1.37952 * 126.10459 * 294.70782 * 20 2 1 22 22 C 1.40320 * 106.52753 * 179.90907 * 21 20 2 23 23 C 1.35150 * 107.20525 * 0.36237 * 22 21 20 24 24 O 1.34019 * 109.03667 * 359.77198 * 23 22 21 25 25 H 1.09002 * 109.47152 * 269.99840 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.99941 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.99922 * 1 2 3 28 28 H 1.07996 * 120.00270 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47271 * 210.00096 * 7 6 4 30 30 H 1.09004 * 109.47041 * 329.99694 * 7 6 4 31 31 H 0.97006 * 120.00459 * 179.97438 * 11 10 8 32 32 H 1.09006 * 109.46998 * 210.00440 * 16 6 4 33 33 H 1.09008 * 109.46880 * 330.00123 * 16 6 4 34 34 H 1.08996 * 109.47611 * 304.99908 * 17 16 6 35 35 H 1.09006 * 109.47002 * 299.99779 * 18 17 16 36 36 H 1.08996 * 109.47241 * 59.99413 * 18 17 16 37 37 H 1.09003 * 109.47260 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47266 * 60.00358 * 19 17 16 39 39 H 1.09003 * 109.47010 * 179.97438 * 19 17 16 40 40 H 1.08998 * 109.47463 * 299.99694 * 19 17 16 41 41 H 1.07995 * 126.73345 * 0.02810 * 21 20 2 42 42 H 1.08001 * 126.39363 * 180.15477 * 22 21 20 43 43 H 1.07999 * 125.48031 * 179.77948 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 3.6006 1.1745 -0.0005 5 8 4.2095 0.1198 -0.0015 6 7 4.2746 2.3417 0.0000 7 6 5.7396 2.3417 -0.0012 8 6 6.2408 2.3429 -1.4223 9 1 5.5385 2.3440 -2.2427 10 6 7.5962 2.3425 -1.6752 11 7 8.4516 2.3417 -0.6763 12 14 8.2176 2.3447 -3.4369 13 1 7.7227 3.5584 -4.1349 14 1 9.7026 2.3433 -3.4381 15 1 7.7215 1.1334 -4.1383 16 6 3.5421 3.6105 0.0005 17 6 3.2871 4.0515 1.4432 18 6 4.6217 4.3543 2.1273 19 6 2.4158 5.3091 1.4455 20 6 2.2150 -1.2264 -0.0005 21 6 2.2180 -2.1638 1.0116 22 6 3.0475 -3.2113 0.5831 23 6 3.5138 -2.8769 -0.6406 24 8 3.0121 -1.6840 -0.9887 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 -0.8900 -0.5139 27 1 -0.3633 0.8900 -0.5138 28 1 1.6452 2.1098 -0.0004 29 1 6.1034 3.2312 0.5132 30 1 6.1033 1.4512 0.5117 31 1 9.4052 2.3411 -0.8542 32 1 4.1312 4.3703 -0.5130 33 1 2.5896 3.4803 -0.5134 34 1 2.7754 3.2540 1.9819 35 1 5.2424 3.4583 2.1256 36 1 5.1334 5.1518 1.5886 37 1 4.4401 4.6681 3.1553 38 1 1.4650 5.0934 0.9581 39 1 2.2338 5.6231 2.4734 40 1 2.9276 6.1067 0.9069 41 1 1.6848 -2.1040 1.9488 42 1 3.2739 -4.1143 1.1305 43 1 4.1831 -3.4750 -1.2413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824234928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:00 Heat of formation + Delta-G solvation = -26.526769 kcal Electronic energy + Delta-G solvation = -24099.390518 eV Core-core repulsion = 20725.084270 eV Total energy + Delta-G solvation = -3374.306248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.27029 -40.95512 -37.92663 -36.30299 -35.28103 -34.11112 -33.67946 -30.68238 -29.50704 -28.55261 -27.96732 -26.84922 -25.06892 -23.38907 -22.45185 -21.52603 -20.81295 -19.69503 -18.69226 -18.21769 -17.80018 -16.95578 -16.71223 -16.37875 -15.99338 -15.66446 -15.07092 -14.74732 -14.47104 -14.27871 -14.06791 -13.94386 -13.70020 -13.68085 -13.45001 -13.37074 -13.23901 -13.05422 -12.95618 -12.75656 -12.66044 -12.46557 -12.15653 -12.08736 -11.84001 -11.56686 -11.51169 -10.73467 -10.66020 -10.63590 -10.27846 -9.34358 -8.92695 -8.22109 -6.37189 -0.12293 1.02620 1.32156 1.36642 1.44032 1.79620 2.30064 2.36077 2.53906 2.64218 3.05905 3.81324 3.82894 3.96314 4.06488 4.19623 4.23922 4.26255 4.34625 4.54469 4.66124 4.68752 4.76134 4.82045 4.86285 4.94167 4.95813 5.00487 5.06653 5.08856 5.14365 5.16272 5.24351 5.30421 5.34550 5.45715 5.50970 5.52339 5.59959 5.75806 5.92066 6.09430 6.33634 6.70779 6.85400 7.28366 7.54780 8.83631 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.006583 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.576152 B = 4252.661203 C = 6075.013166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.021 3.979 3 C -0.202 4.202 4 C 0.514 3.486 5 O -0.581 6.581 6 N -0.595 5.595 7 C 0.267 3.733 8 C -0.542 4.542 9 H 0.048 0.952 10 C 0.009 3.991 11 N -0.928 5.928 12 Si 0.964 3.036 13 H -0.259 1.259 14 H -0.276 1.276 15 H -0.281 1.281 16 C 0.109 3.891 17 C -0.105 4.105 18 C -0.147 4.147 19 C -0.135 4.135 20 C 0.013 3.987 21 C -0.208 4.208 22 C -0.221 4.221 23 C -0.056 4.056 24 O -0.173 6.173 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.174 0.826 29 H 0.033 0.967 30 H -0.013 1.013 31 H 0.266 0.734 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.166 0.834 42 H 0.169 0.831 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.258 -0.089 3.770 19.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.018 3.982 3 C -0.222 4.222 4 C 0.306 3.694 5 O -0.464 6.464 6 N -0.324 5.324 7 C 0.145 3.855 8 C -0.581 4.581 9 H 0.066 0.934 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.788 3.212 13 H -0.184 1.184 14 H -0.201 1.201 15 H -0.207 1.207 16 C -0.013 4.013 17 C -0.125 4.125 18 C -0.205 4.205 19 C -0.193 4.193 20 C -0.037 4.037 21 C -0.227 4.227 22 C -0.240 4.240 23 C -0.124 4.124 24 O -0.068 6.068 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.191 0.809 29 H 0.051 0.949 30 H 0.005 0.995 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.183 0.817 42 H 0.186 0.814 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -18.670 -0.414 3.539 19.007 hybrid contribution 1.598 -0.358 -0.605 1.746 sum -17.072 -0.772 2.933 17.339 Atomic orbital electron populations 1.21018 0.85069 1.05041 1.04997 1.19878 0.97736 0.87897 0.92666 1.22500 0.92483 1.00390 1.06841 1.17856 0.89965 0.83697 0.77851 1.90794 1.71567 1.31912 1.52138 1.48095 1.07606 1.06195 1.70553 1.18728 0.75857 0.95466 0.95440 1.21705 0.92103 1.51017 0.93231 0.93420 1.25817 0.96836 0.94541 1.01806 1.70045 1.02584 1.51174 1.32981 0.85535 0.77325 0.78908 0.79445 1.18372 1.20089 1.20650 1.21892 0.97111 0.84772 0.97553 1.21534 0.96437 0.99480 0.95031 1.21893 0.97407 1.00418 1.00743 1.21726 0.99314 0.95430 1.02784 1.20030 0.96231 0.96931 0.90529 1.22249 1.05647 0.94398 1.00455 1.21890 1.03065 1.02367 0.96704 1.24580 1.02283 0.86099 0.99468 1.84161 1.48806 1.31602 1.42197 0.87594 0.90406 0.87815 0.80858 0.94892 0.99529 0.92466 0.91360 0.88197 0.91139 0.95571 0.93232 0.91406 0.90503 0.91449 0.92555 0.81681 0.81386 0.76925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.02 71.24 0.71 -0.95 16 2 C 0.02 0.60 5.78 -19.64 -0.11 0.48 16 3 C -0.20 -6.36 8.76 22.48 0.20 -6.17 16 4 C 0.51 23.03 7.41 85.06 0.63 23.66 16 5 O -0.58 -31.74 12.38 17.76 0.22 -31.52 16 6 N -0.59 -26.55 2.28 -836.80 -1.91 -28.46 16 7 C 0.27 14.99 4.23 85.63 0.36 15.35 16 8 C -0.54 -32.67 9.39 25.60 0.24 -32.43 16 9 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 10 C 0.01 0.53 5.46 84.66 0.46 0.99 16 11 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 12 Si 0.96 46.59 29.54 68.60 2.03 48.61 16 13 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 15 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 16 C 0.11 3.52 4.58 86.38 0.40 3.92 16 17 C -0.11 -2.78 3.13 -10.80 -0.03 -2.82 16 18 C -0.15 -4.66 8.18 71.98 0.59 -4.07 16 19 C -0.13 -2.43 9.19 71.98 0.66 -1.77 16 20 C 0.01 0.46 4.38 23.03 0.10 0.56 16 21 C -0.21 -6.62 10.90 22.71 0.25 -6.37 16 22 C -0.22 -6.92 10.87 22.06 0.24 -6.68 16 23 C -0.06 -1.94 12.06 67.11 0.81 -1.13 16 24 O -0.17 -7.16 8.90 16.17 0.14 -7.02 16 25 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 27 H 0.10 1.14 8.08 -2.38 -0.02 1.13 16 28 H 0.17 3.82 6.08 -2.91 -0.02 3.80 16 29 H 0.03 1.87 5.98 -2.39 -0.01 1.85 16 30 H -0.01 -0.89 7.42 -2.38 -0.02 -0.90 16 31 H 0.27 15.61 8.31 -92.70 -0.77 14.83 16 32 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 33 H 0.10 2.51 6.08 -2.38 -0.01 2.50 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.03 1.03 5.90 -2.38 -0.01 1.01 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 42 H 0.17 4.10 8.06 -2.91 -0.02 4.07 16 43 H 0.21 5.97 8.06 -2.91 -0.02 5.94 16 Total: -1.00 -82.55 355.05 7.25 -75.29 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.99 Total: 18.16 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 5.50 Total: -17.42 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -1.62 Total: -86.10 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: 0.36 Total: -38.54 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -82.55 7.25 -75.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.766 kcal (2) G-P(sol) polarization free energy of solvation -82.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds