Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46816 * 2 1 4 4 C 1.50697 * 109.47089 * 240.00257 * 2 1 3 5 5 H 1.07998 * 119.99849 * 239.99362 * 4 2 1 6 6 C 1.37881 * 120.00392 * 59.99567 * 4 2 1 7 7 N 1.31516 * 119.99688 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47294 * 90.00206 * 8 6 4 10 10 H 1.48505 * 109.47169 * 209.99945 * 8 6 4 11 11 H 1.48499 * 109.47348 * 330.00097 * 8 6 4 12 12 C 1.52996 * 109.47363 * 119.99630 * 2 1 3 13 13 N 1.46498 * 109.47326 * 300.00053 * 12 2 1 14 14 C 1.34779 * 119.99965 * 179.97438 * 13 12 2 15 15 O 1.21275 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99806 * 180.02562 * 14 13 12 17 17 C 1.50699 * 109.46892 * 180.02562 * 16 14 13 18 18 C 1.38258 * 119.99734 * 265.01848 * 17 16 14 19 19 C 1.38213 * 120.00082 * 179.97438 * 18 17 16 20 20 C 1.38263 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.38215 * 119.99577 * 359.70149 * 20 19 18 22 22 C 1.38209 * 120.00423 * 84.99936 * 17 16 14 23 23 C 1.50701 * 119.99797 * 0.02562 * 22 17 16 24 24 O 1.42903 * 109.46878 * 179.97438 * 23 22 17 25 25 H 1.09007 * 109.47166 * 300.00009 * 1 2 3 26 26 H 1.08997 * 109.47684 * 60.00312 * 1 2 3 27 27 H 1.09006 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47034 * 180.02562 * 3 2 1 29 29 H 1.09011 * 109.46723 * 300.00103 * 3 2 1 30 30 H 1.08997 * 109.47321 * 59.99921 * 3 2 1 31 31 H 0.96997 * 120.00067 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46920 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.47160 * 60.00304 * 12 2 1 34 34 H 0.97002 * 120.00014 * 0.02562 * 13 12 2 35 35 H 1.08994 * 109.47345 * 60.00419 * 16 14 13 36 36 H 1.09006 * 109.46918 * 300.00179 * 16 14 13 37 37 H 1.08002 * 120.00011 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.00169 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.99986 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.99524 * 180.29857 * 21 20 19 41 41 H 1.09002 * 109.47060 * 299.99979 * 23 22 17 42 42 H 1.09001 * 109.47380 * 60.00066 * 23 22 17 43 43 H 0.96700 * 113.99509 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4864 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 6 2.0400 -0.7211 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 1.8770 -0.4912 3.6695 15 8 2.5743 -1.4773 3.7807 16 6 1.3742 0.2189 4.8999 17 6 1.8767 -0.4914 6.1304 18 6 1.0845 -1.4371 6.7547 19 6 1.5456 -2.0889 7.8828 20 6 2.7988 -1.7950 8.3875 21 6 3.5930 -0.8537 7.7601 22 6 3.1296 -0.1979 6.6346 23 6 3.9931 0.8330 5.9542 24 8 5.2304 0.9575 6.6583 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 0.7093 1.1618 -3.4844 32 1 3.1301 -0.7207 1.2494 33 1 1.6768 -1.7488 1.2493 34 1 0.9937 0.7579 2.3564 35 1 0.2843 0.2188 4.8997 36 1 1.7375 1.2466 4.9002 37 1 0.1057 -1.6670 6.3602 38 1 0.9269 -2.8279 8.3702 39 1 3.1589 -2.3040 9.2693 40 1 4.5739 -0.6276 8.1515 41 1 4.1884 0.5230 4.9276 42 1 3.4784 1.7938 5.9520 43 1 5.8375 1.6053 6.2749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837890141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = -75.597820 kcal Electronic energy + Delta-G solvation = -23229.325977 eV Core-core repulsion = 19852.891849 eV Total energy + Delta-G solvation = -3376.434128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10057 -38.73937 -36.70680 -36.36283 -33.29950 -32.99781 -31.37398 -30.87104 -28.01770 -26.06523 -25.76293 -25.50554 -24.62393 -22.06856 -21.12762 -19.91311 -18.80639 -17.57530 -16.97886 -16.56564 -15.78466 -15.39714 -15.34680 -15.03492 -14.69971 -14.49455 -14.41008 -13.80119 -13.35768 -13.09198 -13.01321 -12.85142 -12.32438 -12.21709 -12.16422 -11.97325 -11.38595 -11.22275 -11.00897 -10.88949 -10.85267 -10.71179 -10.43696 -10.40165 -10.22904 -9.66887 -9.60665 -9.30962 -8.82903 -8.72371 -8.55250 -8.47743 -8.33356 -6.04847 -4.14901 1.32270 1.44512 3.02686 3.26552 3.33640 3.37481 3.59316 3.96063 4.06282 4.38594 4.66138 4.77945 4.96818 5.05386 5.14537 5.22026 5.23196 5.31525 5.38995 5.47357 5.55705 5.74548 5.98648 6.09267 6.21323 6.30035 6.45341 6.47681 6.53329 6.62217 6.75198 6.78471 6.89915 6.98267 7.00761 7.01687 7.32129 7.46690 7.52249 7.66803 7.97765 8.02756 8.12891 8.35865 8.68980 8.86047 9.51120 10.96562 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027067 B = 0.003257 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.203539 B = 8594.676171 C = 8874.416107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.718 5.718 14 C 0.504 3.496 15 O -0.541 6.541 16 C -0.110 4.110 17 C -0.055 4.055 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.097 4.097 22 C -0.076 4.076 23 C 0.115 3.885 24 O -0.570 6.570 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.397 0.603 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 2.639 17.801 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.369 5.369 14 C 0.289 3.711 15 O -0.419 6.419 16 C -0.150 4.150 17 C -0.055 4.055 18 C -0.126 4.126 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.115 4.115 22 C -0.076 4.076 23 C 0.038 3.962 24 O -0.376 6.376 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.233 0.767 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.684 1.583 18.072 18.154 hybrid contribution 0.213 0.296 -1.368 1.416 sum 0.897 1.879 16.704 16.833 Atomic orbital electron populations 1.21830 0.97754 0.99171 1.00074 1.18354 0.92799 0.92748 0.90589 1.21827 0.98535 0.98363 1.00076 1.20992 1.31487 1.12101 0.89913 0.92464 1.24879 0.94858 0.94907 0.98860 1.69800 1.36728 1.22716 1.23244 0.86572 0.79350 0.79401 0.82563 1.20693 1.21255 1.19893 1.21704 0.98058 0.95802 0.83440 1.46336 1.52764 1.31864 1.05975 1.20371 0.81159 0.85080 0.84539 1.90707 1.38064 1.26299 1.86834 1.20753 1.02899 1.00120 0.91260 1.19009 0.93804 0.97502 0.95193 1.20917 0.99835 0.95939 0.95861 1.21081 0.96356 0.99796 0.96680 1.21130 0.94658 0.98424 1.00234 1.20915 0.99898 0.95652 0.95055 1.19448 0.93678 0.98122 0.96339 1.20938 0.84190 0.96412 0.94696 1.86403 1.28762 1.65473 1.56932 0.97495 0.89596 0.95468 0.95491 0.89589 0.97509 0.92997 0.92826 0.92785 0.76747 0.87987 0.88381 0.86028 0.86201 0.86267 0.85254 0.91756 0.92396 0.77067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -13.15 8.01 -34.44 -0.28 -13.42 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.34 9.35 55.43 0.52 -22.83 16 8 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.72 -12.21 4.96 -60.30 -0.30 -12.51 16 14 C 0.50 8.35 7.47 -10.98 -0.08 8.27 16 15 O -0.54 -11.24 16.03 5.56 0.09 -11.15 16 16 C -0.11 -1.34 5.33 -29.04 -0.15 -1.49 16 17 C -0.05 -0.73 4.37 -104.63 -0.46 -1.19 16 18 C -0.11 -1.35 9.68 -39.58 -0.38 -1.74 16 19 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 20 C -0.13 -1.49 10.05 -39.58 -0.40 -1.88 16 21 C -0.10 -1.28 9.38 -39.58 -0.37 -1.65 16 22 C -0.08 -1.04 5.88 -104.63 -0.62 -1.65 16 23 C 0.11 1.37 6.22 36.01 0.22 1.60 16 24 O -0.57 -6.30 12.14 -35.23 -0.43 -6.72 16 25 H 0.01 0.12 6.86 -51.92 -0.36 -0.24 16 26 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 2.10 6.07 -51.92 -0.32 1.78 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 5.97 6.16 -40.82 -0.25 5.72 16 35 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 36 H 0.10 0.97 6.84 -51.93 -0.36 0.61 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.62 7.01 -52.48 -0.37 1.26 16 41 H 0.06 0.87 7.78 -51.93 -0.40 0.46 16 42 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 43 H 0.38 2.44 9.12 45.56 0.42 2.85 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -30.85 347.22 -8.02 -38.87 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.61 Total: 8.07 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.50 Total: -14.53 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.22 Total: -35.33 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.34 Total: -17.87 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.85 -8.02 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837890141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.727 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds