Wall clock time and date at job start Tue Mar 31 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46816 * 2 1 4 4 C 1.50697 * 109.47089 * 240.00257 * 2 1 3 5 5 H 1.07998 * 119.99849 * 239.99362 * 4 2 1 6 6 C 1.37881 * 120.00392 * 59.99567 * 4 2 1 7 7 N 1.31516 * 119.99688 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47294 * 90.00206 * 8 6 4 10 10 H 1.48505 * 109.47169 * 209.99945 * 8 6 4 11 11 H 1.48499 * 109.47348 * 330.00097 * 8 6 4 12 12 C 1.52996 * 109.47363 * 119.99630 * 2 1 3 13 13 N 1.46498 * 109.47326 * 300.00053 * 12 2 1 14 14 C 1.34779 * 119.99965 * 179.97438 * 13 12 2 15 15 O 1.21275 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99806 * 180.02562 * 14 13 12 17 17 C 1.50699 * 109.46892 * 180.02562 * 16 14 13 18 18 C 1.38258 * 119.99734 * 265.01848 * 17 16 14 19 19 C 1.38213 * 120.00082 * 179.97438 * 18 17 16 20 20 C 1.38263 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.38215 * 119.99577 * 359.70149 * 20 19 18 22 22 C 1.38209 * 120.00423 * 84.99936 * 17 16 14 23 23 C 1.50701 * 119.99797 * 0.02562 * 22 17 16 24 24 O 1.42903 * 109.46878 * 179.97438 * 23 22 17 25 25 H 1.09007 * 109.47166 * 300.00009 * 1 2 3 26 26 H 1.08997 * 109.47684 * 60.00312 * 1 2 3 27 27 H 1.09006 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47034 * 180.02562 * 3 2 1 29 29 H 1.09011 * 109.46723 * 300.00103 * 3 2 1 30 30 H 1.08997 * 109.47321 * 59.99921 * 3 2 1 31 31 H 0.96997 * 120.00067 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46920 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.47160 * 60.00304 * 12 2 1 34 34 H 0.97002 * 120.00014 * 0.02562 * 13 12 2 35 35 H 1.08994 * 109.47345 * 60.00419 * 16 14 13 36 36 H 1.09006 * 109.46918 * 300.00179 * 16 14 13 37 37 H 1.08002 * 120.00011 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.00169 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.99986 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.99524 * 180.29857 * 21 20 19 41 41 H 1.09002 * 109.47060 * 299.99979 * 23 22 17 42 42 H 1.09001 * 109.47380 * 60.00066 * 23 22 17 43 43 H 0.96700 * 113.99509 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4864 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 6 2.0400 -0.7211 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 1.8770 -0.4912 3.6695 15 8 2.5743 -1.4773 3.7807 16 6 1.3742 0.2189 4.8999 17 6 1.8767 -0.4914 6.1304 18 6 1.0845 -1.4371 6.7547 19 6 1.5456 -2.0889 7.8828 20 6 2.7988 -1.7950 8.3875 21 6 3.5930 -0.8537 7.7601 22 6 3.1296 -0.1979 6.6346 23 6 3.9931 0.8330 5.9542 24 8 5.2304 0.9575 6.6583 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 0.7093 1.1618 -3.4844 32 1 3.1301 -0.7207 1.2494 33 1 1.6768 -1.7488 1.2493 34 1 0.9937 0.7579 2.3564 35 1 0.2843 0.2188 4.8997 36 1 1.7375 1.2466 4.9002 37 1 0.1057 -1.6670 6.3602 38 1 0.9269 -2.8279 8.3702 39 1 3.1589 -2.3040 9.2693 40 1 4.5739 -0.6276 8.1515 41 1 4.1884 0.5230 4.9276 42 1 3.4784 1.7938 5.9520 43 1 5.8375 1.6053 6.2749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837890141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:55 Heat of formation + Delta-G solvation = -95.731051 kcal Electronic energy + Delta-G solvation = -23230.199019 eV Core-core repulsion = 19852.891849 eV Total energy + Delta-G solvation = -3377.307170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22129 -39.95324 -38.07249 -37.54013 -34.96624 -34.02373 -32.68884 -32.23646 -29.12269 -27.54801 -27.40381 -26.98399 -26.21160 -23.06168 -22.18402 -21.14515 -20.57538 -18.45252 -18.38349 -17.65049 -17.48204 -16.70649 -16.53416 -16.41783 -15.92700 -15.67258 -15.59117 -14.90117 -14.68399 -14.62463 -14.56037 -14.01448 -13.88986 -13.26362 -13.25370 -13.08222 -13.03965 -12.95919 -12.65279 -12.60265 -12.23718 -12.13933 -11.90162 -11.73342 -11.47479 -11.27100 -11.25919 -10.87670 -10.68228 -10.39725 -9.91031 -9.67609 -9.48483 -8.02860 -6.18364 0.39385 0.51171 1.41502 1.44775 1.52673 1.73510 2.34157 2.50049 2.92275 3.20744 3.27826 3.70858 3.90495 4.07668 4.11601 4.19917 4.32202 4.40597 4.46749 4.48996 4.52824 4.60636 4.70572 4.73484 4.85205 5.00866 5.07399 5.10422 5.13585 5.19351 5.20783 5.38818 5.56020 5.62034 5.63025 5.67283 5.68607 5.69728 6.12648 6.16975 6.22913 6.44124 6.72199 6.84280 6.86059 7.38154 7.49424 8.95798 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027067 B = 0.003257 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.203539 B = 8594.676171 C = 8874.416107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.711 5.711 14 C 0.506 3.494 15 O -0.586 6.586 16 C -0.099 4.099 17 C -0.073 4.073 18 C -0.120 4.120 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.097 4.097 23 C 0.118 3.882 24 O -0.583 6.583 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.260 0.740 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.410 0.590 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 3.387 19.130 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.025 3.975 13 N -0.363 5.363 14 C 0.293 3.707 15 O -0.467 6.467 16 C -0.138 4.138 17 C -0.074 4.074 18 C -0.138 4.138 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.135 4.135 22 C -0.097 4.097 23 C 0.041 3.959 24 O -0.391 6.391 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.248 0.752 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.178 2.369 19.406 19.551 hybrid contribution 0.517 0.032 -1.723 1.800 sum 0.338 2.401 17.683 17.848 Atomic orbital electron populations 1.21672 0.97025 0.98598 1.00551 1.18352 0.93305 0.93106 0.90178 1.21664 0.97852 0.97717 1.00559 1.21290 1.31705 1.12129 0.91759 0.94022 1.25423 0.95167 0.95582 1.00868 1.69898 1.36991 1.23177 1.23597 0.85799 0.78635 0.78550 0.80057 1.20531 1.20737 1.20207 1.21210 0.96775 0.94967 0.84501 1.46137 1.52946 1.32048 1.05145 1.21140 0.79876 0.84394 0.85277 1.90692 1.40032 1.28520 1.87436 1.20763 1.04543 1.00567 0.87972 1.19218 0.94073 0.98284 0.95813 1.21262 1.00579 0.95727 0.96212 1.21436 0.96582 1.00007 0.96512 1.21460 0.94650 0.97908 1.00771 1.21088 1.00273 0.96495 0.95611 1.19781 0.94282 0.98819 0.96800 1.20887 0.84598 0.97171 0.93281 1.86364 1.29047 1.66519 1.57204 0.94057 0.91951 0.96513 0.96418 0.91971 0.94029 0.93014 0.94707 0.94773 0.75216 0.85001 0.85637 0.84528 0.83732 0.84021 0.85416 0.93855 0.89876 0.74926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 4 C -0.53 -27.91 8.01 25.60 0.21 -27.70 16 5 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 6 C 0.03 1.54 5.15 84.66 0.44 1.98 16 7 N -0.90 -47.29 9.35 21.45 0.20 -47.08 16 8 Si 0.94 42.42 29.54 68.60 2.03 44.45 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.24 4.50 86.38 0.39 6.63 16 13 N -0.71 -22.92 4.96 -463.07 -2.30 -25.22 16 14 C 0.51 16.00 7.47 87.66 0.65 16.66 16 15 O -0.59 -24.28 16.03 -3.01 -0.05 -24.33 16 16 C -0.10 -2.12 5.33 29.10 0.16 -1.97 16 17 C -0.07 -1.83 4.37 -19.87 -0.09 -1.92 16 18 C -0.12 -2.78 9.68 22.27 0.22 -2.56 16 19 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 20 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 21 C -0.12 -2.98 9.38 22.27 0.21 -2.77 16 22 C -0.10 -2.54 5.88 -19.87 -0.12 -2.65 16 23 C 0.12 2.68 6.22 71.24 0.44 3.12 16 24 O -0.58 -12.32 12.14 -148.98 -1.81 -14.13 16 25 H 0.04 1.45 6.86 -2.38 -0.02 1.43 16 26 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 27 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 2.99 6.07 -2.38 -0.01 2.97 16 30 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 31 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 32 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.41 11.03 6.16 -92.71 -0.57 10.46 16 35 H 0.13 2.06 8.05 -2.39 -0.02 2.04 16 36 H 0.13 2.00 6.84 -2.38 -0.02 1.98 16 37 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.13 3.17 7.01 -2.91 -0.02 3.15 16 41 H 0.04 1.15 7.78 -2.39 -0.02 1.14 16 42 H 0.08 1.41 7.51 -2.39 -0.02 1.39 16 43 H 0.40 4.64 9.12 -74.06 -0.68 3.96 16 Total: -1.00 -67.44 347.22 1.94 -65.50 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.22 Total: 24.03 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.09 Total: -23.21 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -2.10 Total: -72.30 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -1.86 Total: -38.46 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -67.44 1.94 -65.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837890141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.234 kcal (2) G-P(sol) polarization free energy of solvation -67.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds