Wall clock time and date at job start Tue Mar 31 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99536 * 2 1 4 4 O 1.21287 * 119.99454 * 185.38377 * 3 2 1 5 5 C 1.50694 * 120.00667 * 5.37450 * 3 2 1 6 6 C 1.50698 * 109.47620 * 180.02562 * 5 3 2 7 7 C 1.38326 * 119.95956 * 269.98238 * 6 5 3 8 8 C 1.38278 * 120.13682 * 180.02562 * 7 6 5 9 9 C 1.38128 * 120.06753 * 359.67236 * 8 7 6 10 10 C 1.38851 * 119.92957 * 0.59726 * 9 8 7 11 11 O 1.35754 * 120.06889 * 179.70181 * 10 9 8 12 12 C 1.34826 * 117.00299 * 354.20680 * 11 10 9 13 13 H 1.08006 * 119.99672 * 5.03158 * 12 11 10 14 14 C 1.38652 * 120.00641 * 185.03506 * 12 11 10 15 15 N 1.31555 * 119.99555 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00507 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46966 * 59.99959 * 16 14 12 18 18 H 1.48499 * 109.47304 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47422 * 300.00423 * 16 14 12 20 20 C 1.38079 * 119.96949 * 89.99540 * 6 5 3 21 21 C 1.46499 * 120.00021 * 179.97438 * 2 1 3 22 22 C 1.53001 * 109.47230 * 235.55137 * 21 2 1 23 23 C 1.53005 * 109.46947 * 355.55366 * 21 2 1 24 24 C 1.53000 * 109.46548 * 115.55026 * 21 2 1 25 25 H 1.08997 * 109.47202 * 90.00351 * 1 2 3 26 26 H 1.08994 * 109.47280 * 210.00705 * 1 2 3 27 27 H 1.09002 * 109.47433 * 330.00649 * 1 2 3 28 28 H 1.08993 * 109.47118 * 60.00054 * 5 3 2 29 29 H 1.09008 * 109.47259 * 300.00361 * 5 3 2 30 30 H 1.08001 * 119.93526 * 0.02562 * 7 6 5 31 31 H 1.07997 * 119.97020 * 179.97438 * 8 7 6 32 32 H 1.08004 * 120.03634 * 180.32394 * 9 8 7 33 33 H 0.97001 * 120.00073 * 179.97438 * 15 14 12 34 34 H 1.07995 * 120.03167 * 0.02562 * 20 6 5 35 35 H 1.08995 * 109.47203 * 60.00044 * 22 21 2 36 36 H 1.09004 * 109.46780 * 180.02562 * 22 21 2 37 37 H 1.08997 * 109.46683 * 300.00000 * 22 21 2 38 38 H 1.08998 * 109.47284 * 59.99608 * 23 21 2 39 39 H 1.09001 * 109.46707 * 179.97438 * 23 21 2 40 40 H 1.08995 * 109.47018 * 299.99669 * 23 21 2 41 41 H 1.09001 * 109.47158 * 60.00749 * 24 21 2 42 42 H 1.09001 * 109.46785 * 179.97438 * 24 21 2 43 43 H 1.08998 * 109.47285 * 300.00148 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3477 1.1695 -0.0986 5 6 1.3904 2.4694 0.1222 6 6 2.3685 3.6156 0.0958 7 6 2.9142 4.0853 1.2769 8 6 3.8117 5.1371 1.2569 9 6 4.1711 5.7175 0.0561 10 6 3.6207 5.2519 -1.1306 11 8 3.9673 5.8243 -2.3118 12 6 4.7562 6.9161 -2.2548 13 1 5.1496 7.2491 -1.3056 14 6 5.0626 7.6115 -3.4145 15 7 4.5830 7.2062 -4.5705 16 14 6.1551 9.1246 -3.3354 17 1 7.4809 8.7494 -2.7812 18 1 6.3295 9.6812 -4.7010 19 1 5.5242 10.1456 -2.4609 20 6 2.7188 4.1958 -1.1072 21 6 2.1975 -1.2687 0.0006 22 6 3.1592 -1.3019 1.1901 23 6 1.2070 -2.4294 0.1129 24 6 2.9913 -1.3998 -1.3009 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 0.8381 2.4843 1.0618 29 1 0.6936 2.5676 -0.7103 30 1 2.6389 3.6297 2.2165 31 1 4.2358 5.5020 2.1807 32 1 4.8761 6.5356 0.0407 33 1 4.7970 7.6929 -5.3818 34 1 2.2918 3.8290 -2.0288 35 1 2.5937 -1.2085 2.1172 36 1 3.7045 -2.2457 1.1902 37 1 3.8648 -0.4750 1.1100 38 1 0.5219 -2.4058 -0.7345 39 1 1.7520 -3.3734 0.1129 40 1 0.6415 -2.3360 1.0400 41 1 3.6970 -0.5729 -1.3809 42 1 3.5367 -2.3435 -1.3003 43 1 2.3062 -1.3761 -2.1483 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843713890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:58 Heat of formation + Delta-G solvation = -36.533455 kcal Electronic energy + Delta-G solvation = -23304.083829 eV Core-core repulsion = 19929.343659 eV Total energy + Delta-G solvation = -3374.740170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36028 -38.88026 -37.02393 -36.11364 -33.55388 -32.24834 -31.55164 -29.11121 -28.38249 -27.29962 -26.97469 -25.83229 -25.17408 -22.01678 -21.46104 -20.31339 -18.38065 -17.55565 -16.90583 -16.68607 -16.25839 -15.70837 -14.99971 -14.59125 -14.36752 -14.06007 -13.90500 -13.71286 -13.41690 -13.31068 -13.00906 -12.84684 -12.60520 -12.39849 -12.23704 -12.17334 -11.89599 -11.77845 -11.63212 -11.44304 -11.21730 -11.13720 -11.06450 -10.75074 -10.69755 -10.54874 -10.40505 -9.36435 -9.26484 -8.76653 -8.61801 -7.97575 -7.13802 -6.37441 -3.96437 2.17309 2.47391 2.83690 3.01386 3.17691 3.19223 3.21373 4.02698 4.45720 4.67648 4.75364 4.88061 4.94607 4.99730 5.12767 5.17912 5.25917 5.31104 5.33003 5.47990 5.50859 5.57075 5.61129 5.66338 5.69447 5.75626 5.82647 5.87010 5.90527 6.01036 6.23588 6.27473 6.35045 6.41937 6.67666 6.74404 6.99950 7.14495 7.35295 7.43624 7.45486 7.52061 7.91152 8.07740 8.39606 9.08267 9.79967 10.80909 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026456 B = 0.003345 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.114709 B = 8369.083006 C = 8721.001631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.619 5.619 3 C 0.517 3.483 4 O -0.513 6.513 5 C -0.093 4.093 6 C -0.032 4.032 7 C -0.196 4.196 8 C -0.075 4.075 9 C -0.231 4.231 10 C 0.155 3.845 11 O -0.180 6.180 12 C -0.391 4.391 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.865 5.865 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.174 4.174 21 C 0.170 3.830 22 C -0.164 4.164 23 C -0.152 4.152 24 C -0.163 4.163 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.269 0.731 34 H 0.113 0.887 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 -15.653 10.533 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.356 5.356 3 C 0.305 3.695 4 O -0.387 6.387 5 C -0.133 4.133 6 C -0.032 4.032 7 C -0.215 4.215 8 C -0.093 4.093 9 C -0.250 4.250 10 C 0.102 3.898 11 O -0.084 6.084 12 C -0.467 4.467 13 H 0.108 0.892 14 C -0.165 4.165 15 N -0.501 5.501 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.196 1.196 20 C -0.193 4.193 21 C 0.086 3.914 22 C -0.222 4.222 23 C -0.210 4.210 24 C -0.221 4.221 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.143 0.857 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.641 -15.633 9.982 20.462 hybrid contribution 0.440 0.715 0.064 0.842 sum -8.201 -14.918 10.046 19.767 Atomic orbital electron populations 1.21879 0.80115 1.03319 1.01893 1.48085 1.06522 1.05544 1.75400 1.20678 0.88190 0.84679 0.75905 1.90684 1.14139 1.86792 1.47059 1.20640 0.97909 0.90715 1.04029 1.18682 0.96890 0.94517 0.93130 1.20332 1.03671 1.01200 0.96303 1.20670 0.96468 0.95493 0.96694 1.21163 1.06298 1.05267 0.92319 1.19272 0.91957 0.92175 0.86423 1.83975 1.60192 1.39907 1.24336 1.21267 1.26747 1.03085 0.95619 0.89211 1.25262 0.98058 0.98933 0.94271 1.70033 1.42528 1.39318 0.98183 0.85797 0.79718 0.80174 0.77821 1.19547 1.20333 1.19550 1.19935 1.02649 0.99676 0.97085 1.20347 0.91965 0.82875 0.96190 1.22229 1.00056 1.03406 0.96529 1.22154 0.99223 0.97558 1.02053 1.22224 1.00882 1.03049 0.95955 0.92720 0.90729 0.90904 0.88586 0.88521 0.88049 0.87545 0.85675 0.92089 0.86933 0.92972 0.92080 0.89873 0.91921 0.91259 0.91959 0.90160 0.92171 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 9.45 59.85 0.57 1.11 16 2 N -0.62 -7.10 2.82 -166.60 -0.47 -7.57 16 3 C 0.52 7.81 7.07 -10.99 -0.08 7.73 16 4 O -0.51 -9.88 12.28 5.55 0.07 -9.81 16 5 C -0.09 -1.31 4.28 -29.04 -0.12 -1.43 16 6 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 7 C -0.20 -3.64 9.70 -39.53 -0.38 -4.02 16 8 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 9 C -0.23 -5.34 9.17 -39.39 -0.36 -5.70 16 10 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 11 O -0.18 -5.37 9.76 0.05 0.00 -5.37 16 12 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 13 H 0.09 2.41 5.21 -52.48 -0.27 2.13 16 14 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 15 N -0.87 -26.04 13.67 55.48 0.76 -25.28 16 16 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 C -0.17 -3.92 9.65 -39.39 -0.38 -4.30 16 21 C 0.17 1.83 1.04 -131.82 -0.14 1.69 16 22 C -0.16 -1.86 8.33 37.16 0.31 -1.55 16 23 C -0.15 -1.12 7.18 37.16 0.27 -0.85 16 24 C -0.16 -1.95 8.47 37.16 0.31 -1.64 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.43 5.71 -51.93 -0.30 0.13 16 27 H 0.07 0.48 6.45 -51.93 -0.33 0.14 16 28 H 0.10 1.06 7.54 -51.93 -0.39 0.67 16 29 H 0.10 1.19 7.98 -51.92 -0.41 0.78 16 30 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.22 6.04 -51.93 -0.31 0.90 16 38 H 0.06 0.42 7.64 -51.93 -0.40 0.03 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.40 7.08 -51.93 -0.37 0.03 16 41 H 0.08 1.24 6.32 -51.93 -0.33 0.91 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -34.23 346.69 -6.72 -40.95 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.35 Total: 4.00 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -0.92 Total: -18.22 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.29 Total: -32.85 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.07 Total: -15.18 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.23 -6.72 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843713890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.414 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds