Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99536 * 2 1 4 4 O 1.21287 * 119.99454 * 185.38377 * 3 2 1 5 5 C 1.50694 * 120.00667 * 5.37450 * 3 2 1 6 6 C 1.50698 * 109.47620 * 180.02562 * 5 3 2 7 7 C 1.38326 * 119.95956 * 269.98238 * 6 5 3 8 8 C 1.38278 * 120.13682 * 180.02562 * 7 6 5 9 9 C 1.38128 * 120.06753 * 359.67236 * 8 7 6 10 10 C 1.38851 * 119.92957 * 0.59726 * 9 8 7 11 11 O 1.35754 * 120.06889 * 179.70181 * 10 9 8 12 12 C 1.34826 * 117.00299 * 354.20680 * 11 10 9 13 13 H 1.08006 * 119.99672 * 5.03158 * 12 11 10 14 14 C 1.38652 * 120.00641 * 185.03506 * 12 11 10 15 15 N 1.31555 * 119.99555 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00507 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46966 * 59.99959 * 16 14 12 18 18 H 1.48499 * 109.47304 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47422 * 300.00423 * 16 14 12 20 20 C 1.38079 * 119.96949 * 89.99540 * 6 5 3 21 21 C 1.46499 * 120.00021 * 179.97438 * 2 1 3 22 22 C 1.53001 * 109.47230 * 235.55137 * 21 2 1 23 23 C 1.53005 * 109.46947 * 355.55366 * 21 2 1 24 24 C 1.53000 * 109.46548 * 115.55026 * 21 2 1 25 25 H 1.08997 * 109.47202 * 90.00351 * 1 2 3 26 26 H 1.08994 * 109.47280 * 210.00705 * 1 2 3 27 27 H 1.09002 * 109.47433 * 330.00649 * 1 2 3 28 28 H 1.08993 * 109.47118 * 60.00054 * 5 3 2 29 29 H 1.09008 * 109.47259 * 300.00361 * 5 3 2 30 30 H 1.08001 * 119.93526 * 0.02562 * 7 6 5 31 31 H 1.07997 * 119.97020 * 179.97438 * 8 7 6 32 32 H 1.08004 * 120.03634 * 180.32394 * 9 8 7 33 33 H 0.97001 * 120.00073 * 179.97438 * 15 14 12 34 34 H 1.07995 * 120.03167 * 0.02562 * 20 6 5 35 35 H 1.08995 * 109.47203 * 60.00044 * 22 21 2 36 36 H 1.09004 * 109.46780 * 180.02562 * 22 21 2 37 37 H 1.08997 * 109.46683 * 300.00000 * 22 21 2 38 38 H 1.08998 * 109.47284 * 59.99608 * 23 21 2 39 39 H 1.09001 * 109.46707 * 179.97438 * 23 21 2 40 40 H 1.08995 * 109.47018 * 299.99669 * 23 21 2 41 41 H 1.09001 * 109.47158 * 60.00749 * 24 21 2 42 42 H 1.09001 * 109.46785 * 179.97438 * 24 21 2 43 43 H 1.08998 * 109.47285 * 300.00148 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3477 1.1695 -0.0986 5 6 1.3904 2.4694 0.1222 6 6 2.3685 3.6156 0.0958 7 6 2.9142 4.0853 1.2769 8 6 3.8117 5.1371 1.2569 9 6 4.1711 5.7175 0.0561 10 6 3.6207 5.2519 -1.1306 11 8 3.9673 5.8243 -2.3118 12 6 4.7562 6.9161 -2.2548 13 1 5.1496 7.2491 -1.3056 14 6 5.0626 7.6115 -3.4145 15 7 4.5830 7.2062 -4.5705 16 14 6.1551 9.1246 -3.3354 17 1 7.4809 8.7494 -2.7812 18 1 6.3295 9.6812 -4.7010 19 1 5.5242 10.1456 -2.4609 20 6 2.7188 4.1958 -1.1072 21 6 2.1975 -1.2687 0.0006 22 6 3.1592 -1.3019 1.1901 23 6 1.2070 -2.4294 0.1129 24 6 2.9913 -1.3998 -1.3009 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 0.8381 2.4843 1.0618 29 1 0.6936 2.5676 -0.7103 30 1 2.6389 3.6297 2.2165 31 1 4.2358 5.5020 2.1807 32 1 4.8761 6.5356 0.0407 33 1 4.7970 7.6929 -5.3818 34 1 2.2918 3.8290 -2.0288 35 1 2.5937 -1.2085 2.1172 36 1 3.7045 -2.2457 1.1902 37 1 3.8648 -0.4750 1.1100 38 1 0.5219 -2.4058 -0.7345 39 1 1.7520 -3.3734 0.1129 40 1 0.6415 -2.3360 1.0400 41 1 3.6970 -0.5729 -1.3809 42 1 3.5367 -2.3435 -1.3003 43 1 2.3062 -1.3761 -2.1483 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843713890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = -58.401545 kcal Electronic energy + Delta-G solvation = -23305.032100 eV Core-core repulsion = 19929.343659 eV Total energy + Delta-G solvation = -3375.688442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46408 -40.61760 -38.49781 -37.49661 -34.60313 -34.27395 -32.95120 -30.86448 -29.11873 -28.39051 -28.22652 -27.23768 -26.54824 -23.45708 -23.08706 -21.72581 -19.56495 -19.28494 -18.73286 -17.68123 -17.20554 -16.88341 -16.68041 -16.13134 -16.10973 -15.53018 -15.26748 -15.00254 -14.78998 -14.54101 -14.27408 -13.96392 -13.69877 -13.61442 -13.52950 -13.19930 -13.09159 -12.93847 -12.80150 -12.49974 -12.47304 -12.45675 -12.29008 -12.22033 -12.12708 -12.03247 -11.91540 -11.20841 -10.80730 -10.52164 -9.62779 -9.54173 -8.97866 -8.47175 -6.16090 0.52393 0.75778 1.33326 1.44898 1.50268 1.72079 2.08356 2.17825 2.83510 3.16356 3.43705 3.68069 3.86873 3.98845 4.09503 4.09978 4.16945 4.29044 4.34591 4.42743 4.57368 4.60379 4.67147 4.68869 4.72811 4.76413 4.79007 4.84098 4.94265 4.99042 5.02617 5.07757 5.12351 5.23106 5.30055 5.34776 5.39896 5.64856 5.72590 5.75571 5.81204 6.02431 6.22955 6.51131 6.97027 7.32105 7.78820 8.76299 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026456 B = 0.003345 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.114709 B = 8369.083006 C = 8721.001631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.611 5.611 3 C 0.511 3.489 4 O -0.567 6.567 5 C -0.091 4.091 6 C -0.023 4.023 7 C -0.180 4.180 8 C -0.073 4.073 9 C -0.247 4.247 10 C 0.113 3.887 11 O -0.235 6.235 12 C -0.416 4.416 13 H 0.100 0.900 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.020 2.980 17 H -0.259 1.259 18 H -0.270 1.270 19 H -0.255 1.255 20 C -0.193 4.193 21 C 0.163 3.837 22 C -0.160 4.160 23 C -0.144 4.144 24 C -0.161 4.161 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.114 0.886 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.118 0.882 33 H 0.273 0.727 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 -17.122 13.663 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.345 5.345 3 C 0.300 3.700 4 O -0.446 6.446 5 C -0.130 4.130 6 C -0.024 4.024 7 C -0.198 4.198 8 C -0.091 4.091 9 C -0.266 4.266 10 C 0.063 3.937 11 O -0.142 6.142 12 C -0.492 4.492 13 H 0.117 0.883 14 C -0.221 4.221 15 N -0.561 5.561 16 Si 0.839 3.161 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.179 1.179 20 C -0.213 4.213 21 C 0.079 3.921 22 C -0.218 4.218 23 C -0.201 4.201 24 C -0.220 4.220 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.157 0.843 29 H 0.132 0.868 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.136 0.864 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.497 -17.157 13.164 24.039 hybrid contribution 0.851 0.908 -0.698 1.427 sum -9.646 -16.249 12.467 22.638 Atomic orbital electron populations 1.22225 0.77363 1.05517 1.03067 1.48157 1.08236 1.04717 1.73414 1.20849 0.87610 0.85948 0.75630 1.90690 1.16415 1.87635 1.49837 1.20744 0.96927 0.88201 1.07124 1.19200 0.96588 0.94859 0.91726 1.20941 1.01424 0.99631 0.97850 1.21128 0.96075 0.95170 0.96702 1.21288 1.06620 1.05749 0.92982 1.19863 0.93807 0.93576 0.86481 1.83934 1.62207 1.41312 1.26772 1.21801 1.27289 1.03575 0.96577 0.88257 1.26625 0.99572 1.02467 0.93435 1.70188 1.45136 1.41588 0.99162 0.84635 0.77578 0.75461 0.78426 1.18342 1.19417 1.17922 1.20188 1.02854 0.99640 0.98587 1.20520 0.92794 0.83879 0.94905 1.22166 0.99694 1.02590 0.97335 1.22108 0.98591 0.96107 1.03337 1.22194 1.00428 1.02131 0.97204 0.92055 0.88126 0.89254 0.84268 0.86756 0.83679 0.83671 0.86424 0.91836 0.87916 0.91799 0.90615 0.93723 0.90996 0.90101 0.90231 0.94441 0.90507 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 9.45 127.77 1.21 1.86 16 2 N -0.61 -12.45 2.82 -799.37 -2.26 -14.71 16 3 C 0.51 14.68 7.07 87.66 0.62 15.30 16 4 O -0.57 -22.24 12.28 -3.05 -0.04 -22.27 16 5 C -0.09 -2.28 4.28 29.10 0.12 -2.16 16 6 C -0.02 -0.84 4.37 -19.88 -0.09 -0.93 16 7 C -0.18 -6.14 9.70 22.30 0.22 -5.93 16 8 C -0.07 -2.74 10.04 22.25 0.22 -2.51 16 9 C -0.25 -11.71 9.17 22.39 0.21 -11.50 16 10 C 0.11 6.10 6.65 22.58 0.15 6.25 16 11 O -0.24 -15.11 9.76 -22.75 -0.22 -15.33 16 12 C -0.42 -25.59 9.49 67.92 0.64 -24.94 16 13 H 0.10 5.62 5.21 -2.91 -0.02 5.60 16 14 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 15 N -0.92 -58.76 13.67 21.61 0.30 -58.47 16 16 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 C -0.19 -9.06 9.65 22.39 0.22 -8.84 16 21 C 0.16 3.15 1.04 3.61 0.00 3.16 16 22 C -0.16 -3.37 8.33 71.98 0.60 -2.77 16 23 C -0.14 -1.54 7.18 71.98 0.52 -1.03 16 24 C -0.16 -3.82 8.47 71.98 0.61 -3.21 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.63 5.71 -2.39 -0.01 0.61 16 27 H 0.09 0.72 6.45 -2.39 -0.02 0.70 16 28 H 0.14 2.32 7.54 -2.39 -0.02 2.30 16 29 H 0.11 2.51 7.98 -2.38 -0.02 2.49 16 30 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 31 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.12 5.61 5.64 -2.91 -0.02 5.59 16 33 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 34 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 37 H 0.04 1.31 6.04 -2.39 -0.01 1.30 16 38 H 0.07 0.67 7.64 -2.39 -0.02 0.65 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.61 7.08 -2.39 -0.02 0.60 16 41 H 0.04 1.21 6.32 -2.39 -0.02 1.20 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -83.68 346.69 6.52 -77.15 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 1.00 Total: 25.24 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 5.72 Total: -38.20 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -1.96 Total: -73.17 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.26 Total: -37.61 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -83.68 6.52 -77.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843713890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.753 kcal (2) G-P(sol) polarization free energy of solvation -83.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds