Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35624 * 119.99948 * 2 1 4 4 C 1.41605 * 120.00263 * 6.61535 * 3 2 1 5 5 C 1.37950 * 126.10850 * 177.91176 * 4 3 2 6 6 C 1.40318 * 106.52856 * 179.75131 * 5 4 3 7 7 C 1.35149 * 107.20305 * 0.40186 * 6 5 4 8 8 O 1.34010 * 109.03906 * 359.59079 * 7 6 5 9 9 C 1.41551 * 119.99913 * 179.97438 * 2 1 3 10 10 O 1.21783 * 120.00182 * 154.32370 * 9 2 1 11 11 N 1.34775 * 120.00559 * 334.31908 * 9 2 1 12 12 C 1.46497 * 120.00489 * 188.76652 * 11 9 2 13 13 C 1.50707 * 109.46833 * 90.00284 * 12 11 9 14 14 H 1.08000 * 119.99662 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99733 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00314 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99501 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47494 * 60.00190 * 17 15 13 19 19 H 1.48503 * 109.46895 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47448 * 300.00019 * 17 15 13 21 21 C 1.46502 * 119.99438 * 8.77386 * 11 9 2 22 22 C 1.53001 * 109.47204 * 98.72193 * 21 11 9 23 23 C 1.52999 * 109.47124 * 65.86060 * 22 21 11 24 24 C 1.53004 * 109.47056 * 185.86066 * 22 21 11 25 25 H 1.08996 * 109.47309 * 33.70282 * 1 2 3 26 26 H 1.08997 * 109.47182 * 153.70071 * 1 2 3 27 27 H 1.08995 * 109.47379 * 273.70029 * 1 2 3 28 28 H 1.08003 * 119.99852 * 186.61826 * 3 2 1 29 29 H 1.07994 * 126.73081 * 359.97438 * 5 4 3 30 30 H 1.08000 * 126.39550 * 180.26137 * 6 5 4 31 31 H 1.08005 * 125.47707 * 179.84752 * 7 6 5 32 32 H 1.09002 * 109.47328 * 210.00189 * 12 11 9 33 33 H 1.08997 * 109.47046 * 330.00577 * 12 11 9 34 34 H 0.97003 * 120.00452 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.47053 * 218.71847 * 21 11 9 36 36 H 1.08994 * 109.47430 * 338.72145 * 21 11 9 37 37 H 1.09003 * 109.46793 * 305.85863 * 22 21 11 38 38 H 1.09001 * 109.47155 * 299.99978 * 23 22 21 39 39 H 1.09002 * 109.47022 * 60.00532 * 23 22 21 40 40 H 1.09007 * 109.47277 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.46977 * 59.99910 * 24 22 21 42 42 H 1.09005 * 109.46836 * 179.97438 * 24 22 21 43 43 H 1.08994 * 109.47042 * 299.99834 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 1.4842 2.3968 0.1413 5 6 2.0472 3.6549 0.1986 6 6 0.9851 4.5617 0.3347 7 6 -0.1565 3.8389 0.3637 8 8 0.1461 2.5389 0.2439 9 6 2.2147 -1.2259 0.0005 10 8 3.3423 -1.2782 -0.4564 11 7 1.6408 -2.3352 0.5068 12 6 2.4336 -3.5542 0.6848 13 6 3.0541 -3.5537 2.0582 14 1 2.8754 -2.7281 2.7312 15 6 3.8492 -4.6077 2.4558 16 7 4.0664 -5.6131 1.6365 17 14 4.6177 -4.6073 4.1584 18 1 3.5461 -4.5590 5.1853 19 1 5.4215 -5.8429 4.3389 20 1 5.4970 -3.4196 4.3044 21 6 0.2239 -2.3221 0.8790 22 6 -0.6046 -2.9466 -0.2455 23 6 -0.2530 -4.4300 -0.3747 24 6 -2.0933 -2.8015 0.0768 25 1 -0.3634 0.8549 -0.5702 26 1 -0.3633 -0.9213 -0.4553 27 1 -0.3634 0.0663 1.0255 28 1 3.2597 1.1776 -0.1078 29 1 3.0987 3.8949 0.1451 30 1 1.0651 5.6364 0.4056 31 1 -1.1527 4.2441 0.4630 32 1 1.7884 -4.4262 0.5780 33 1 3.2199 -3.5895 -0.0691 34 1 4.6260 -6.3545 1.9161 35 1 0.0835 -2.8957 1.7952 36 1 -0.0998 -1.2940 1.0408 37 1 -0.3848 -2.4379 -1.1842 38 1 0.8075 -4.5334 -0.6043 39 1 -0.4729 -4.9386 0.5640 40 1 -0.8436 -4.8751 -1.1756 41 1 -2.3438 -1.7447 0.1688 42 1 -2.6835 -3.2460 -0.7246 43 1 -2.3131 -3.3100 1.0154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847398801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = 30.843633 kcal Electronic energy + Delta-G solvation = -23923.777147 eV Core-core repulsion = 20551.958667 eV Total energy + Delta-G solvation = -3371.818480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.59504 -39.91780 -36.65282 -35.01075 -33.45011 -33.19280 -32.29903 -30.32236 -27.77717 -27.00830 -26.68741 -25.30582 -23.79071 -21.88847 -21.78904 -20.35020 -20.01028 -18.13509 -16.93065 -16.52003 -16.19924 -16.17964 -15.68921 -14.90526 -14.53162 -14.45851 -14.15146 -13.43248 -13.36543 -13.14785 -12.90430 -12.76226 -12.66706 -12.34913 -12.13760 -12.00875 -11.91460 -11.59929 -11.43076 -10.98984 -10.91213 -10.86342 -10.47181 -10.39007 -10.19374 -10.12266 -9.95936 -9.66325 -9.49776 -8.92097 -8.37778 -7.84288 -7.46732 -6.01590 -4.05938 0.67688 2.16654 2.83788 2.94509 3.32984 3.37341 3.40232 3.78570 4.11360 4.46710 4.76294 4.87747 4.96791 5.06617 5.08380 5.18827 5.24295 5.31716 5.50310 5.54861 5.62265 5.65258 5.72343 5.84512 5.87345 5.89384 6.00833 6.12709 6.15631 6.22040 6.24737 6.32201 6.38122 6.47892 6.52398 6.67520 6.76851 7.07079 7.21552 7.49718 7.60323 7.95232 8.27859 8.45931 8.91270 9.09181 9.58396 11.06028 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.004902 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.819461 B = 5710.666932 C = 6947.786245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C -0.045 4.045 4 C 0.021 3.979 5 C -0.188 4.188 6 C -0.213 4.213 7 C -0.047 4.047 8 O -0.158 6.158 9 C 0.541 3.459 10 O -0.546 6.546 11 N -0.582 5.582 12 C 0.232 3.768 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.063 3.937 22 C -0.114 4.114 23 C -0.155 4.155 24 C -0.145 4.145 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.201 0.799 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 14.745 -3.136 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.065 4.065 4 C -0.028 4.028 5 C -0.207 4.207 6 C -0.232 4.232 7 C -0.115 4.115 8 O -0.054 6.054 9 C 0.330 3.670 10 O -0.427 6.427 11 N -0.312 5.312 12 C 0.113 3.887 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.060 4.060 22 C -0.133 4.133 23 C -0.212 4.212 24 C -0.203 4.203 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.175 0.825 29 H 0.170 0.830 30 H 0.165 0.835 31 H 0.217 0.783 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.560 14.220 -3.379 19.272 hybrid contribution 0.569 0.124 1.091 1.237 sum -11.991 14.344 -2.288 18.836 Atomic orbital electron populations 1.21827 0.91441 1.04197 1.02219 1.21319 0.96836 0.94363 1.01395 1.20454 0.99736 0.87313 0.98995 1.19940 0.80242 0.95412 1.07227 1.22250 1.00559 0.91158 1.06727 1.21701 0.92340 1.00743 1.08440 1.24246 1.00440 0.80910 1.05919 1.84360 1.24173 1.27091 1.69808 1.16754 0.86422 0.84060 0.79752 1.90807 1.19409 1.85825 1.46649 1.48067 1.09744 1.13233 1.60127 1.19612 0.91248 0.80547 0.97269 1.21424 1.30178 1.05306 0.99665 0.92645 1.24905 0.96153 0.95389 0.97540 1.69916 1.38593 1.09100 1.35732 0.86590 0.79359 0.77384 0.84274 1.20290 1.21177 1.20236 1.22842 0.81518 1.04253 0.97359 1.21583 0.94846 0.97681 0.99195 1.22112 1.03264 0.94593 1.01252 1.21817 0.95415 1.01332 1.01723 0.90808 0.88676 0.89813 0.82549 0.83028 0.83466 0.78265 0.93138 0.93879 0.92701 0.90752 0.87097 0.91254 0.90346 0.92514 0.93764 0.92804 0.92775 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 6.60 36.00 0.24 -1.64 16 2 C -0.14 -2.31 5.69 -104.30 -0.59 -2.91 16 3 C -0.05 -0.71 9.39 -39.23 -0.37 -1.08 16 4 C 0.02 0.29 6.67 -38.40 -0.26 0.03 16 5 C -0.19 -2.21 10.90 -38.91 -0.42 -2.63 16 6 C -0.21 -2.09 10.87 -39.90 -0.43 -2.53 16 7 C -0.05 -0.44 12.06 29.63 0.36 -0.08 16 8 O -0.16 -1.93 7.18 4.69 0.03 -1.89 16 9 C 0.54 11.76 7.26 -15.00 -0.11 11.65 16 10 O -0.55 -14.11 15.92 5.11 0.08 -14.02 16 11 N -0.58 -12.52 2.43 -178.49 -0.43 -12.96 16 12 C 0.23 6.06 4.43 -5.19 -0.02 6.03 16 13 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 17 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.06 1.06 4.41 -4.04 -0.02 1.04 16 22 C -0.11 -1.63 2.15 -90.62 -0.19 -1.82 16 23 C -0.16 -2.49 8.13 37.16 0.30 -2.19 16 24 C -0.15 -1.59 9.10 37.16 0.34 -1.26 16 25 H 0.07 0.90 5.74 -51.93 -0.30 0.60 16 26 H 0.10 1.23 2.96 -51.93 -0.15 1.07 16 27 H 0.08 1.02 6.77 -51.93 -0.35 0.67 16 28 H 0.16 2.50 7.64 -52.48 -0.40 2.10 16 29 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.20 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.05 1.30 4.93 -51.93 -0.26 1.04 16 33 H 0.04 1.28 7.32 -51.93 -0.38 0.90 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.11 1.59 2.75 -84.10 -0.23 1.36 16 37 H 0.07 1.01 6.92 -51.93 -0.36 0.65 16 38 H 0.08 1.51 5.18 -51.93 -0.27 1.24 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.05 0.51 7.80 -51.93 -0.41 0.10 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -33.36 341.18 -7.10 -40.46 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.03 Total: 3.15 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.61 Total: -11.03 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.30 Total: -38.79 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.12 Total: -15.92 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.36 -7.10 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847398801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.304 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds