Wall clock time and date at job start Tue Mar 31 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35624 * 119.99948 * 2 1 4 4 C 1.41605 * 120.00263 * 6.61535 * 3 2 1 5 5 C 1.37950 * 126.10850 * 177.91176 * 4 3 2 6 6 C 1.40318 * 106.52856 * 179.75131 * 5 4 3 7 7 C 1.35149 * 107.20305 * 0.40186 * 6 5 4 8 8 O 1.34010 * 109.03906 * 359.59079 * 7 6 5 9 9 C 1.41551 * 119.99913 * 179.97438 * 2 1 3 10 10 O 1.21783 * 120.00182 * 154.32370 * 9 2 1 11 11 N 1.34775 * 120.00559 * 334.31908 * 9 2 1 12 12 C 1.46497 * 120.00489 * 188.76652 * 11 9 2 13 13 C 1.50707 * 109.46833 * 90.00284 * 12 11 9 14 14 H 1.08000 * 119.99662 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99733 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00314 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99501 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47494 * 60.00190 * 17 15 13 19 19 H 1.48503 * 109.46895 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47448 * 300.00019 * 17 15 13 21 21 C 1.46502 * 119.99438 * 8.77386 * 11 9 2 22 22 C 1.53001 * 109.47204 * 98.72193 * 21 11 9 23 23 C 1.52999 * 109.47124 * 65.86060 * 22 21 11 24 24 C 1.53004 * 109.47056 * 185.86066 * 22 21 11 25 25 H 1.08996 * 109.47309 * 33.70282 * 1 2 3 26 26 H 1.08997 * 109.47182 * 153.70071 * 1 2 3 27 27 H 1.08995 * 109.47379 * 273.70029 * 1 2 3 28 28 H 1.08003 * 119.99852 * 186.61826 * 3 2 1 29 29 H 1.07994 * 126.73081 * 359.97438 * 5 4 3 30 30 H 1.08000 * 126.39550 * 180.26137 * 6 5 4 31 31 H 1.08005 * 125.47707 * 179.84752 * 7 6 5 32 32 H 1.09002 * 109.47328 * 210.00189 * 12 11 9 33 33 H 1.08997 * 109.47046 * 330.00577 * 12 11 9 34 34 H 0.97003 * 120.00452 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.47053 * 218.71847 * 21 11 9 36 36 H 1.08994 * 109.47430 * 338.72145 * 21 11 9 37 37 H 1.09003 * 109.46793 * 305.85863 * 22 21 11 38 38 H 1.09001 * 109.47155 * 299.99978 * 23 22 21 39 39 H 1.09002 * 109.47022 * 60.00532 * 23 22 21 40 40 H 1.09007 * 109.47277 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.46977 * 59.99910 * 24 22 21 42 42 H 1.09005 * 109.46836 * 179.97438 * 24 22 21 43 43 H 1.08994 * 109.47042 * 299.99834 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 1.4842 2.3968 0.1413 5 6 2.0472 3.6549 0.1986 6 6 0.9851 4.5617 0.3347 7 6 -0.1565 3.8389 0.3637 8 8 0.1461 2.5389 0.2439 9 6 2.2147 -1.2259 0.0005 10 8 3.3423 -1.2782 -0.4564 11 7 1.6408 -2.3352 0.5068 12 6 2.4336 -3.5542 0.6848 13 6 3.0541 -3.5537 2.0582 14 1 2.8754 -2.7281 2.7312 15 6 3.8492 -4.6077 2.4558 16 7 4.0664 -5.6131 1.6365 17 14 4.6177 -4.6073 4.1584 18 1 3.5461 -4.5590 5.1853 19 1 5.4215 -5.8429 4.3389 20 1 5.4970 -3.4196 4.3044 21 6 0.2239 -2.3221 0.8790 22 6 -0.6046 -2.9466 -0.2455 23 6 -0.2530 -4.4300 -0.3747 24 6 -2.0933 -2.8015 0.0768 25 1 -0.3634 0.8549 -0.5702 26 1 -0.3633 -0.9213 -0.4553 27 1 -0.3634 0.0663 1.0255 28 1 3.2597 1.1776 -0.1078 29 1 3.0987 3.8949 0.1451 30 1 1.0651 5.6364 0.4056 31 1 -1.1527 4.2441 0.4630 32 1 1.7884 -4.4262 0.5780 33 1 3.2199 -3.5895 -0.0691 34 1 4.6260 -6.3545 1.9161 35 1 0.0835 -2.8957 1.7952 36 1 -0.0998 -1.2940 1.0408 37 1 -0.3848 -2.4379 -1.1842 38 1 0.8075 -4.5334 -0.6043 39 1 -0.4729 -4.9386 0.5640 40 1 -0.8436 -4.8751 -1.1756 41 1 -2.3438 -1.7447 0.1688 42 1 -2.6835 -3.2460 -0.7246 43 1 -2.3131 -3.3100 1.0154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847398801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:52 Heat of formation + Delta-G solvation = 10.573239 kcal Electronic energy + Delta-G solvation = -23924.656137 eV Core-core repulsion = 20551.958667 eV Total energy + Delta-G solvation = -3372.697471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.47254 -41.46343 -38.15011 -36.38614 -35.22388 -34.17763 -34.01533 -31.54371 -29.30624 -28.53617 -27.77872 -26.58840 -25.58576 -23.31195 -22.66028 -21.60651 -21.12902 -19.54019 -18.67930 -17.87557 -17.57763 -17.43358 -17.01864 -16.46498 -16.27195 -15.69742 -15.43326 -14.89576 -14.78455 -14.41310 -14.12884 -13.86608 -13.72726 -13.64963 -13.45049 -13.36052 -13.20677 -12.97333 -12.93822 -12.74322 -12.62804 -12.21071 -12.14505 -11.86960 -11.72638 -11.59073 -11.37947 -11.11988 -10.67425 -10.59744 -10.51019 -9.40489 -8.72905 -8.21179 -6.36650 -0.46532 1.26499 1.34416 1.38683 1.46148 1.80096 2.08278 2.20148 2.40207 2.57381 3.06807 3.71431 3.88254 3.91739 3.99625 4.06271 4.13411 4.19519 4.29738 4.47852 4.62887 4.66465 4.68854 4.76244 4.85790 4.87982 4.98331 5.01061 5.05235 5.08378 5.10580 5.14889 5.23863 5.27619 5.32262 5.42873 5.50223 5.56326 5.59354 5.64140 5.89198 6.09202 6.18241 6.69828 6.78695 7.25773 7.43018 8.84571 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.004902 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.819461 B = 5710.666932 C = 6947.786245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.176 4.176 3 C -0.017 4.017 4 C -0.024 4.024 5 C -0.173 4.173 6 C -0.228 4.228 7 C -0.020 4.020 8 O -0.165 6.165 9 C 0.535 3.465 10 O -0.608 6.608 11 N -0.587 5.587 12 C 0.248 3.752 13 C -0.546 4.546 14 H 0.049 0.951 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.966 3.034 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.278 1.278 21 C 0.058 3.942 22 C -0.107 4.107 23 C -0.154 4.154 24 C -0.137 4.137 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.140 0.860 29 H 0.161 0.839 30 H 0.176 0.824 31 H 0.247 0.753 32 H 0.051 0.949 33 H -0.010 1.010 34 H 0.267 0.733 35 H 0.061 0.939 36 H 0.144 0.856 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.046 17.730 -1.899 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.178 4.178 3 C -0.037 4.037 4 C -0.072 4.072 5 C -0.192 4.192 6 C -0.246 4.246 7 C -0.088 4.088 8 O -0.061 6.061 9 C 0.327 3.673 10 O -0.493 6.493 11 N -0.315 5.315 12 C 0.127 3.873 13 C -0.585 4.585 14 H 0.067 0.933 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.204 1.204 21 C -0.063 4.063 22 C -0.126 4.126 23 C -0.211 4.211 24 C -0.195 4.195 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.157 0.843 29 H 0.179 0.821 30 H 0.193 0.807 31 H 0.263 0.737 32 H 0.069 0.931 33 H 0.009 0.991 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.609 17.207 -2.134 23.330 hybrid contribution 1.507 -0.565 0.652 1.736 sum -14.102 16.642 -1.482 21.864 Atomic orbital electron populations 1.21720 0.88385 1.04949 1.03235 1.21083 0.98764 0.91966 1.06027 1.20424 0.99290 0.88327 0.95685 1.19589 0.81250 0.94808 1.11572 1.22655 1.01841 0.91085 1.03665 1.22100 0.91643 1.02080 1.08826 1.25274 1.02305 0.79632 1.01597 1.84329 1.23164 1.28692 1.69892 1.17532 0.85973 0.85447 0.78378 1.90750 1.22265 1.86808 1.49494 1.48047 1.11501 1.11831 1.60105 1.19112 0.90490 0.82890 0.94780 1.21708 1.30985 1.05323 1.00473 0.93255 1.25824 0.96434 0.94851 1.01831 1.70043 1.39125 1.09705 1.37754 0.85501 0.78692 0.77443 0.79377 1.18486 1.20133 1.20411 1.23253 0.78923 1.06343 0.97746 1.21542 0.97095 0.95776 0.98236 1.22051 1.00772 0.96542 1.01696 1.21769 0.92134 1.03216 1.02347 0.89166 0.88593 0.88414 0.84253 0.82132 0.80653 0.73739 0.93137 0.99142 0.92400 0.92007 0.83966 0.91266 0.94652 0.93092 0.91457 0.90408 0.91282 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 6.60 71.23 0.47 -2.70 16 2 C -0.18 -6.11 5.69 -19.65 -0.11 -6.22 16 3 C -0.02 -0.55 9.39 22.50 0.21 -0.34 16 4 C -0.02 -0.60 6.67 23.03 0.15 -0.44 16 5 C -0.17 -3.64 10.90 22.71 0.25 -3.40 16 6 C -0.23 -3.47 10.87 22.06 0.24 -3.23 16 7 C -0.02 -0.27 12.06 67.11 0.81 0.54 16 8 O -0.16 -3.42 7.18 -6.13 -0.04 -3.46 16 9 C 0.53 24.83 7.26 85.06 0.62 25.45 16 10 O -0.61 -34.27 15.92 -4.61 -0.07 -34.34 16 11 N -0.59 -26.83 2.43 -836.81 -2.03 -28.86 16 12 C 0.25 14.00 4.43 85.64 0.38 14.38 16 13 C -0.55 -32.74 9.39 25.60 0.24 -32.50 16 14 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 15 C 0.01 0.57 5.46 84.66 0.46 1.03 16 16 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 17 Si 0.97 46.05 29.54 68.60 2.03 48.08 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 21 C 0.06 1.97 4.41 86.38 0.38 2.35 16 22 C -0.11 -3.01 2.15 -10.79 -0.02 -3.04 16 23 C -0.15 -5.08 8.13 71.98 0.59 -4.49 16 24 C -0.14 -2.61 9.10 71.98 0.65 -1.96 16 25 H 0.09 1.95 5.74 -2.39 -0.01 1.93 16 26 H 0.10 2.32 2.96 -2.39 -0.01 2.31 16 27 H 0.10 2.10 6.77 -2.39 -0.02 2.08 16 28 H 0.14 4.79 7.64 -2.91 -0.02 4.77 16 29 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.25 0.90 8.06 -2.91 -0.02 0.87 16 32 H 0.05 2.82 4.93 -2.39 -0.01 2.81 16 33 H -0.01 -0.63 7.32 -2.39 -0.02 -0.65 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 36 H 0.14 3.91 2.75 -32.61 -0.09 3.82 16 37 H 0.07 1.98 6.92 -2.39 -0.02 1.96 16 38 H 0.03 1.46 5.18 -2.39 -0.01 1.45 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.08 1.14 7.80 -2.39 -0.02 1.12 16 42 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -79.46 341.18 6.42 -73.04 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.93 Total: 17.20 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 5.32 Total: -14.57 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.74 Total: -85.95 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.12 Total: -37.81 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.46 6.42 -73.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847398801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.613 kcal (2) G-P(sol) polarization free energy of solvation -79.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds