Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35628 * 120.00005 * 2 1 4 4 C 1.41608 * 119.99900 * 175.12605 * 3 2 1 5 5 C 1.37950 * 126.10359 * 174.68977 * 4 3 2 6 6 C 1.40310 * 106.52880 * 180.02562 * 5 4 3 7 7 C 1.35153 * 107.20531 * 359.97438 * 6 5 4 8 8 O 1.34022 * 109.03741 * 0.02562 * 7 6 5 9 9 C 1.41559 * 119.99845 * 180.02562 * 2 1 3 10 10 O 1.21775 * 119.99770 * 278.62062 * 9 2 1 11 11 N 1.34775 * 119.99791 * 98.62366 * 9 2 1 12 12 C 1.46494 * 120.00576 * 4.56328 * 11 9 2 13 13 C 1.50705 * 109.47044 * 93.92266 * 12 11 9 14 14 H 1.08003 * 119.99671 * 0.14503 * 13 12 11 15 15 C 1.37876 * 120.00239 * 180.14160 * 13 12 11 16 16 N 1.31519 * 119.99740 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00190 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47022 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47177 * 119.99759 * 17 15 13 20 20 H 1.48498 * 109.47315 * 240.00008 * 17 15 13 21 21 C 1.46505 * 119.99723 * 184.56818 * 11 9 2 22 22 C 1.53001 * 109.47208 * 95.64590 * 21 11 9 23 23 C 1.52999 * 109.47238 * 177.98355 * 22 21 11 24 24 C 1.53005 * 109.47115 * 297.98522 * 22 21 11 25 25 H 1.08992 * 109.47530 * 84.98874 * 1 2 3 26 26 H 1.08997 * 109.46876 * 204.99125 * 1 2 3 27 27 H 1.09001 * 109.46837 * 324.98826 * 1 2 3 28 28 H 1.08000 * 119.99903 * 355.12660 * 3 2 1 29 29 H 1.07999 * 126.73166 * 359.97438 * 5 4 3 30 30 H 1.07996 * 126.40064 * 180.02562 * 6 5 4 31 31 H 1.08002 * 125.48220 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47751 * 213.92167 * 12 11 9 33 33 H 1.08998 * 109.47043 * 333.93040 * 12 11 9 34 34 H 0.96996 * 119.99884 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47031 * 215.64341 * 21 11 9 36 36 H 1.08997 * 109.46939 * 335.64589 * 21 11 9 37 37 H 1.09000 * 109.47260 * 57.97873 * 22 21 11 38 38 H 1.08999 * 109.47006 * 60.00272 * 23 22 21 39 39 H 1.08999 * 109.47287 * 179.97438 * 23 22 21 40 40 H 1.08990 * 109.47214 * 300.00204 * 23 22 21 41 41 H 1.08996 * 109.47461 * 185.11726 * 24 22 21 42 42 H 1.09003 * 109.47059 * 305.11720 * 24 22 21 43 43 H 1.08999 * 109.47570 * 65.11265 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 3.5974 1.1768 0.1042 5 6 4.4174 2.2824 0.0141 6 6 5.7319 1.8186 0.1740 7 6 5.6649 0.4805 0.3518 8 8 4.3812 0.0976 0.3092 9 6 2.2148 -1.2260 -0.0005 10 8 2.3823 -1.8327 1.0419 11 7 2.7032 -1.7215 -1.1548 12 6 2.5897 -0.9448 -2.3917 13 6 3.8472 -0.1400 -2.5967 14 1 4.6516 -0.2028 -1.8786 15 6 3.9710 0.6764 -3.7008 16 7 2.9917 0.7524 -4.5754 17 14 5.5300 1.6735 -3.9552 18 1 6.4730 1.4114 -2.8383 19 1 6.1639 1.2819 -5.2398 20 1 5.1928 3.1193 -3.9901 21 6 3.3477 -3.0371 -1.1725 22 6 2.3281 -4.0989 -1.5894 23 6 3.0132 -5.4653 -1.6566 24 6 1.1937 -4.1471 -0.5638 25 1 -0.3634 0.0898 -1.0236 26 1 -0.3633 -0.9314 0.4342 27 1 -0.3633 0.8417 0.5896 28 1 1.6481 2.1082 -0.0795 29 1 4.1082 3.3043 -0.1485 30 1 6.6296 2.4188 0.1588 31 1 6.5098 -0.1749 0.5037 32 1 2.4503 -1.6219 -3.2345 33 1 1.7352 -0.2719 -2.3210 34 1 3.0786 1.3271 -5.3520 35 1 4.1737 -3.0275 -1.8837 36 1 3.7276 -3.2689 -0.1775 37 1 1.9217 -3.8476 -2.5690 38 1 3.4195 -5.7166 -0.6769 39 1 2.2868 -6.2218 -1.9531 40 1 3.8213 -5.4310 -2.3871 41 1 0.5152 -4.9636 -0.8106 42 1 1.6096 -4.3083 0.4308 43 1 0.6481 -3.2036 -0.5808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847398802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = -13.010167 kcal Electronic energy + Delta-G solvation = -25293.415902 eV Core-core repulsion = 21919.695778 eV Total energy + Delta-G solvation = -3373.720124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.81049 -39.41252 -36.05024 -34.60147 -33.61608 -32.32842 -32.11733 -29.86740 -27.39524 -26.77915 -26.26368 -25.58307 -23.13141 -22.11999 -20.92053 -20.25281 -19.36009 -17.83577 -16.83723 -16.55212 -15.88662 -15.27522 -14.94860 -14.73003 -14.43121 -14.20715 -13.72521 -13.64237 -12.84273 -12.69467 -12.53501 -12.37512 -12.24919 -12.04531 -11.96285 -11.86729 -11.85404 -11.48449 -11.32672 -11.12152 -10.91343 -10.80766 -10.66935 -10.53943 -10.22794 -9.99824 -9.65006 -9.54683 -9.12124 -8.93331 -8.48437 -7.54685 -7.06705 -6.09520 -4.12425 1.42687 2.93867 3.25329 3.33152 3.35403 3.41382 3.63942 3.82778 4.20530 4.43967 5.24089 5.25541 5.30634 5.33738 5.40225 5.51469 5.58540 5.61728 5.78420 5.90721 5.92384 5.96271 6.03880 6.09207 6.13316 6.18924 6.32081 6.37807 6.41012 6.42888 6.46806 6.63525 6.68406 6.78598 6.81924 6.89438 6.91171 7.20436 7.28412 7.67193 7.84223 7.88354 8.17576 8.46172 8.91222 9.12676 9.53792 10.97548 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.007952 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.587733 B = 3520.085004 C = 4185.916148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.141 4.141 3 C -0.045 4.045 4 C 0.049 3.951 5 C -0.198 4.198 6 C -0.215 4.215 7 C -0.036 4.036 8 O -0.142 6.142 9 C 0.565 3.435 10 O -0.569 6.569 11 N -0.582 5.582 12 C 0.238 3.762 13 C -0.519 4.519 14 H 0.068 0.932 15 C 0.068 3.932 16 N -0.894 5.894 17 Si 0.883 3.117 18 H -0.266 1.266 19 H -0.288 1.288 20 H -0.284 1.284 21 C 0.125 3.875 22 C -0.112 4.112 23 C -0.140 4.140 24 C -0.135 4.135 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.189 0.811 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 -2.311 6.452 6.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C -0.064 4.064 4 C -0.002 4.002 5 C -0.217 4.217 6 C -0.235 4.235 7 C -0.105 4.105 8 O -0.036 6.036 9 C 0.354 3.646 10 O -0.451 6.451 11 N -0.311 5.311 12 C 0.118 3.882 13 C -0.558 4.558 14 H 0.087 0.913 15 C -0.134 4.134 16 N -0.534 5.534 17 Si 0.711 3.289 18 H -0.190 1.190 19 H -0.214 1.214 20 H -0.210 1.210 21 C 0.002 3.998 22 C -0.132 4.132 23 C -0.198 4.198 24 C -0.193 4.193 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.206 0.794 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.245 -2.844 6.819 7.492 hybrid contribution 1.125 1.010 -0.761 1.692 sum -0.120 -1.834 6.058 6.331 Atomic orbital electron populations 1.20635 0.89916 1.02616 1.02549 1.20865 0.97035 0.94035 1.02462 1.20054 0.88460 0.97829 1.00092 1.19518 0.91521 0.84422 1.04690 1.21908 0.92532 0.98825 1.08440 1.21457 0.97975 0.94986 1.09050 1.23827 0.84811 0.95710 1.06193 1.84194 1.16471 1.34579 1.68403 1.16750 0.78970 0.84994 0.83845 1.90735 1.61026 1.61663 1.31654 1.48127 1.55396 1.17664 1.09875 1.19391 0.97853 0.90700 0.80216 1.21620 1.02058 1.24510 1.07578 0.91346 1.24842 0.96209 0.96682 0.95702 1.69939 1.31784 1.39210 1.12417 0.86634 0.84074 0.80141 0.78055 1.19017 1.21401 1.21015 1.21301 0.94503 0.82113 1.01920 1.21495 0.96825 0.95092 0.99775 1.21736 1.00267 0.96315 1.01513 1.21735 0.97742 1.00661 0.99145 0.90592 0.91728 0.91229 0.83666 0.84096 0.84466 0.79368 0.95158 0.94429 0.92932 0.90953 0.90834 0.91138 0.92884 0.93033 0.92716 0.93858 0.92445 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 10.01 36.01 0.36 -1.16 16 2 C -0.14 -2.71 3.72 -104.29 -0.39 -3.10 16 3 C -0.05 -0.86 9.18 -39.23 -0.36 -1.22 16 4 C 0.05 1.00 4.86 -38.40 -0.19 0.81 16 5 C -0.20 -3.73 10.90 -38.91 -0.42 -4.16 16 6 C -0.22 -3.88 10.87 -39.90 -0.43 -4.32 16 7 C -0.04 -0.67 11.16 29.63 0.33 -0.34 16 8 O -0.14 -3.04 6.58 -0.19 0.00 -3.04 16 9 C 0.57 12.03 2.82 -14.99 -0.04 11.98 16 10 O -0.57 -13.19 15.75 0.25 0.00 -13.18 16 11 N -0.58 -12.33 1.96 -178.49 -0.35 -12.68 16 12 C 0.24 5.66 4.91 -5.19 -0.03 5.64 16 13 C -0.52 -13.25 7.43 -34.44 -0.26 -13.51 16 14 H 0.07 1.78 5.13 -52.48 -0.27 1.51 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 17 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.13 2.39 5.03 -4.04 -0.02 2.37 16 22 C -0.11 -1.83 3.14 -90.62 -0.28 -2.12 16 23 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 24 C -0.14 -2.19 8.13 37.16 0.30 -1.89 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 27 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 28 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.14 2.33 8.06 -52.49 -0.42 1.90 16 30 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.19 2.83 8.06 -52.49 -0.42 2.40 16 32 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 33 H 0.04 0.94 6.62 -51.93 -0.34 0.59 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 36 H 0.07 1.44 7.21 -51.93 -0.37 1.07 16 37 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 43 H 0.05 0.88 6.95 -51.93 -0.36 0.52 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -30.41 350.77 -7.33 -37.74 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.80 Total: 4.74 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.18 Total: -10.85 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.39 Total: -36.67 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.00 Total: -16.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.41 -7.33 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847398802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.734 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds