Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35628 * 120.00005 * 2 1 4 4 C 1.41608 * 119.99900 * 175.12605 * 3 2 1 5 5 C 1.37950 * 126.10359 * 174.68977 * 4 3 2 6 6 C 1.40310 * 106.52880 * 180.02562 * 5 4 3 7 7 C 1.35153 * 107.20531 * 359.97438 * 6 5 4 8 8 O 1.34022 * 109.03741 * 0.02562 * 7 6 5 9 9 C 1.41559 * 119.99845 * 180.02562 * 2 1 3 10 10 O 1.21775 * 119.99770 * 278.62062 * 9 2 1 11 11 N 1.34775 * 119.99791 * 98.62366 * 9 2 1 12 12 C 1.46494 * 120.00576 * 4.56328 * 11 9 2 13 13 C 1.50705 * 109.47044 * 93.92266 * 12 11 9 14 14 H 1.08003 * 119.99671 * 0.14503 * 13 12 11 15 15 C 1.37876 * 120.00239 * 180.14160 * 13 12 11 16 16 N 1.31519 * 119.99740 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00190 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47022 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47177 * 119.99759 * 17 15 13 20 20 H 1.48498 * 109.47315 * 240.00008 * 17 15 13 21 21 C 1.46505 * 119.99723 * 184.56818 * 11 9 2 22 22 C 1.53001 * 109.47208 * 95.64590 * 21 11 9 23 23 C 1.52999 * 109.47238 * 177.98355 * 22 21 11 24 24 C 1.53005 * 109.47115 * 297.98522 * 22 21 11 25 25 H 1.08992 * 109.47530 * 84.98874 * 1 2 3 26 26 H 1.08997 * 109.46876 * 204.99125 * 1 2 3 27 27 H 1.09001 * 109.46837 * 324.98826 * 1 2 3 28 28 H 1.08000 * 119.99903 * 355.12660 * 3 2 1 29 29 H 1.07999 * 126.73166 * 359.97438 * 5 4 3 30 30 H 1.07996 * 126.40064 * 180.02562 * 6 5 4 31 31 H 1.08002 * 125.48220 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47751 * 213.92167 * 12 11 9 33 33 H 1.08998 * 109.47043 * 333.93040 * 12 11 9 34 34 H 0.96996 * 119.99884 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47031 * 215.64341 * 21 11 9 36 36 H 1.08997 * 109.46939 * 335.64589 * 21 11 9 37 37 H 1.09000 * 109.47260 * 57.97873 * 22 21 11 38 38 H 1.08999 * 109.47006 * 60.00272 * 23 22 21 39 39 H 1.08999 * 109.47287 * 179.97438 * 23 22 21 40 40 H 1.08990 * 109.47214 * 300.00204 * 23 22 21 41 41 H 1.08996 * 109.47461 * 185.11726 * 24 22 21 42 42 H 1.09003 * 109.47059 * 305.11720 * 24 22 21 43 43 H 1.08999 * 109.47570 * 65.11265 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 3.5974 1.1768 0.1042 5 6 4.4174 2.2824 0.0141 6 6 5.7319 1.8186 0.1740 7 6 5.6649 0.4805 0.3518 8 8 4.3812 0.0976 0.3092 9 6 2.2148 -1.2260 -0.0005 10 8 2.3823 -1.8327 1.0419 11 7 2.7032 -1.7215 -1.1548 12 6 2.5897 -0.9448 -2.3917 13 6 3.8472 -0.1400 -2.5967 14 1 4.6516 -0.2028 -1.8786 15 6 3.9710 0.6764 -3.7008 16 7 2.9917 0.7524 -4.5754 17 14 5.5300 1.6735 -3.9552 18 1 6.4730 1.4114 -2.8383 19 1 6.1639 1.2819 -5.2398 20 1 5.1928 3.1193 -3.9901 21 6 3.3477 -3.0371 -1.1725 22 6 2.3281 -4.0989 -1.5894 23 6 3.0132 -5.4653 -1.6566 24 6 1.1937 -4.1471 -0.5638 25 1 -0.3634 0.0898 -1.0236 26 1 -0.3633 -0.9314 0.4342 27 1 -0.3633 0.8417 0.5896 28 1 1.6481 2.1082 -0.0795 29 1 4.1082 3.3043 -0.1485 30 1 6.6296 2.4188 0.1588 31 1 6.5098 -0.1749 0.5037 32 1 2.4503 -1.6219 -3.2345 33 1 1.7352 -0.2719 -2.3210 34 1 3.0786 1.3271 -5.3520 35 1 4.1737 -3.0275 -1.8837 36 1 3.7276 -3.2689 -0.1775 37 1 1.9217 -3.8476 -2.5690 38 1 3.4195 -5.7166 -0.6769 39 1 2.2868 -6.2218 -1.9531 40 1 3.8213 -5.4310 -2.3871 41 1 0.5152 -4.9636 -0.8106 42 1 1.6096 -4.3083 0.4308 43 1 0.6481 -3.2036 -0.5808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847398802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = -28.219627 kcal Electronic energy + Delta-G solvation = -25294.075433 eV Core-core repulsion = 21919.695778 eV Total energy + Delta-G solvation = -3374.379655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.28417 -41.04305 -37.53144 -36.22206 -35.24219 -34.03389 -33.71583 -31.23353 -29.26194 -28.05844 -27.69604 -27.01015 -25.00924 -23.64672 -22.36966 -21.69332 -20.78760 -19.41806 -18.55152 -18.35252 -17.52195 -16.82603 -16.50119 -16.31633 -16.24576 -15.57515 -15.25008 -15.00528 -14.37286 -14.10081 -14.02032 -13.89082 -13.66852 -13.58887 -13.40280 -13.30026 -13.22866 -13.05677 -12.77334 -12.72849 -12.59244 -12.53036 -12.18276 -12.03313 -11.82777 -11.54375 -11.46774 -11.10516 -10.69867 -10.53743 -10.46103 -9.30126 -8.51992 -8.11649 -6.19543 -0.03216 1.36635 1.41539 1.49738 1.53235 1.77130 2.16341 2.37879 2.44422 2.65647 3.20888 3.83183 3.92808 3.99906 4.08328 4.18425 4.22138 4.23343 4.49154 4.60501 4.67444 4.68360 4.77328 4.79819 4.82832 4.90698 4.97624 5.01804 5.02675 5.04964 5.10042 5.19916 5.22284 5.31236 5.40274 5.40961 5.46264 5.50933 5.79974 5.81627 5.95880 6.18521 6.39473 6.69195 6.94311 7.39836 7.52703 8.94633 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.007952 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.587733 B = 3520.085004 C = 4185.916148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.167 4.167 3 C -0.051 4.051 4 C 0.017 3.983 5 C -0.200 4.200 6 C -0.220 4.220 7 C -0.051 4.051 8 O -0.169 6.169 9 C 0.568 3.432 10 O -0.594 6.594 11 N -0.583 5.583 12 C 0.256 3.744 13 C -0.513 4.513 14 H 0.064 0.936 15 C 0.028 3.972 16 N -0.923 5.923 17 Si 0.931 3.069 18 H -0.260 1.260 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.124 3.876 22 C -0.108 4.108 23 C -0.134 4.134 24 C -0.127 4.127 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.176 0.824 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.216 0.784 32 H 0.011 0.989 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 -1.979 6.690 7.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.169 4.169 3 C -0.069 4.069 4 C -0.033 4.033 5 C -0.219 4.219 6 C -0.239 4.239 7 C -0.119 4.119 8 O -0.064 6.064 9 C 0.359 3.641 10 O -0.478 6.478 11 N -0.311 5.311 12 C 0.136 3.864 13 C -0.551 4.551 14 H 0.082 0.918 15 C -0.171 4.171 16 N -0.564 5.564 17 Si 0.758 3.242 18 H -0.184 1.184 19 H -0.216 1.216 20 H -0.208 1.208 21 C 0.000 4.000 22 C -0.127 4.127 23 C -0.191 4.191 24 C -0.185 4.185 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.193 0.807 29 H 0.180 0.820 30 H 0.182 0.818 31 H 0.232 0.768 32 H 0.029 0.971 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.842 -2.519 7.065 7.548 hybrid contribution 1.060 0.898 -0.788 1.597 sum 0.218 -1.621 6.277 6.487 Atomic orbital electron populations 1.20672 0.87288 1.03876 1.03230 1.21176 0.99012 0.93238 1.03523 1.20520 0.88305 0.98958 0.99153 1.19988 0.92372 0.84804 1.06148 1.22318 0.92825 0.99498 1.07281 1.21846 0.98697 0.95013 1.08299 1.24542 0.84716 0.96884 1.05769 1.84170 1.17625 1.35616 1.68974 1.17048 0.78442 0.85434 0.83205 1.90705 1.62098 1.62699 1.32269 1.48077 1.55612 1.18229 1.09194 1.18999 0.96902 0.90025 0.80519 1.21723 1.02220 1.24130 1.07057 0.91820 1.25408 0.98346 0.97686 0.95686 1.70023 1.33268 1.40177 1.12962 0.85875 0.81495 0.78982 0.77853 1.18361 1.21617 1.20770 1.21407 0.95159 0.82159 1.01231 1.21448 0.96350 0.95902 0.99017 1.21689 1.00671 0.94679 1.02103 1.21652 0.97802 1.00555 0.98457 0.90357 0.91899 0.88226 0.80672 0.82013 0.81784 0.76773 0.97116 0.95507 0.92947 0.91752 0.91620 0.92196 0.92333 0.91018 0.92290 0.91263 0.93489 0.95217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.76 10.01 71.24 0.71 -2.05 16 2 C -0.17 -6.37 3.72 -19.65 -0.07 -6.44 16 3 C -0.05 -1.87 9.18 22.50 0.21 -1.67 16 4 C 0.02 0.67 4.86 23.03 0.11 0.78 16 5 C -0.20 -7.20 10.90 22.71 0.25 -6.95 16 6 C -0.22 -7.45 10.87 22.06 0.24 -7.21 16 7 C -0.05 -1.82 11.16 67.11 0.75 -1.07 16 8 O -0.17 -7.16 6.58 -1.53 -0.01 -7.18 16 9 C 0.57 24.43 2.82 85.06 0.24 24.67 16 10 O -0.59 -27.97 15.75 0.07 0.00 -27.97 16 11 N -0.58 -25.08 1.96 -836.82 -1.64 -26.72 16 12 C 0.26 12.37 4.91 85.64 0.42 12.79 16 13 C -0.51 -26.16 7.43 25.60 0.19 -25.97 16 14 H 0.06 3.30 5.13 -2.91 -0.01 3.28 16 15 C 0.03 1.46 5.46 84.65 0.46 1.93 16 16 N -0.92 -51.07 13.29 21.45 0.28 -50.78 16 17 Si 0.93 42.34 29.54 68.60 2.03 44.36 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 C 0.12 4.78 5.03 86.38 0.43 5.21 16 22 C -0.11 -3.48 3.14 -10.79 -0.03 -3.51 16 23 C -0.13 -3.37 9.19 71.98 0.66 -2.70 16 24 C -0.13 -4.05 8.13 71.98 0.58 -3.46 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.06 1.84 8.06 -2.39 -0.02 1.82 16 27 H 0.10 2.28 8.11 -2.39 -0.02 2.26 16 28 H 0.18 5.12 8.06 -2.91 -0.02 5.10 16 29 H 0.16 4.94 8.06 -2.91 -0.02 4.92 16 30 H 0.16 4.53 8.06 -2.91 -0.02 4.50 16 31 H 0.22 6.12 8.06 -2.91 -0.02 6.09 16 32 H 0.01 0.56 8.04 -2.39 -0.02 0.54 16 33 H 0.03 1.36 6.62 -2.39 -0.02 1.34 16 34 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.06 2.54 8.11 -2.39 -0.02 2.52 16 36 H 0.07 2.63 7.21 -2.39 -0.02 2.61 16 37 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.58 7.97 -2.39 -0.02 1.56 16 43 H 0.03 1.04 6.95 -2.39 -0.02 1.02 16 Total: -1.00 -64.82 350.77 6.79 -58.02 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.98 Total: 25.92 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 5.15 Total: -15.66 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -1.36 Total: -77.51 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.01 Total: -35.14 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -64.82 6.79 -58.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847398802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.804 kcal (2) G-P(sol) polarization free energy of solvation -64.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds