Wall clock time and date at job start Tue Mar 31 2020 07:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.50697 * 109.47214 * 239.99501 * 2 1 3 5 5 H 1.08001 * 120.00040 * 241.36064 * 4 2 1 6 6 C 1.37872 * 120.00241 * 61.36275 * 4 2 1 7 7 N 1.31510 * 120.00725 * 193.96067 * 6 4 2 8 8 Si 1.86803 * 119.99752 * 13.96300 * 6 4 2 9 9 H 1.48502 * 109.47124 * 84.55615 * 8 6 4 10 10 H 1.48500 * 109.47344 * 204.55440 * 8 6 4 11 11 H 1.48498 * 109.47198 * 324.55665 * 8 6 4 12 12 C 1.53001 * 109.46837 * 119.99790 * 2 1 3 13 13 O 1.45200 * 109.47028 * 300.00095 * 12 2 1 14 14 C 1.34230 * 116.99984 * 180.02562 * 13 12 2 15 15 O 1.20828 * 120.00268 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00019 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47176 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47020 * 180.02562 * 17 16 14 19 19 C 1.50705 * 109.47014 * 179.97438 * 18 17 16 20 20 C 1.38677 * 120.41474 * 270.24616 * 19 18 17 21 21 C 1.38622 * 118.41644 * 180.24217 * 20 19 18 22 22 C 1.38225 * 119.16728 * 359.75401 * 21 20 19 23 23 N 1.31863 * 120.75743 * 359.97438 * 22 21 20 24 24 C 1.31880 * 121.72737 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.47722 * 309.31920 * 1 2 3 26 26 H 1.09002 * 109.47066 * 69.32242 * 1 2 3 27 27 H 1.09001 * 109.47466 * 189.31681 * 1 2 3 28 28 H 1.09006 * 109.46812 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47381 * 299.99323 * 3 2 1 30 30 H 1.09002 * 109.47571 * 59.99896 * 3 2 1 31 31 H 0.96994 * 120.00611 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47277 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47340 * 60.00131 * 12 2 1 34 34 H 1.08998 * 109.47568 * 59.99930 * 16 14 13 35 35 H 1.09009 * 109.46825 * 300.00160 * 16 14 13 36 36 H 1.08996 * 109.47244 * 59.99849 * 17 16 14 37 37 H 1.09004 * 109.46337 * 299.99823 * 17 16 14 38 38 H 1.08996 * 109.47506 * 59.99677 * 18 17 16 39 39 H 1.09004 * 109.47149 * 299.98993 * 18 17 16 40 40 H 1.08002 * 120.78881 * 359.97245 * 20 19 18 41 41 H 1.08009 * 120.41730 * 179.73140 * 21 20 19 42 42 H 1.08003 * 119.62417 * 180.02562 * 22 21 20 43 43 H 1.07998 * 119.61443 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6350 -1.6012 -1.1313 6 6 1.7226 -0.2234 -2.4825 7 7 1.9163 -0.9725 -3.5459 8 14 1.0279 1.5006 -2.6684 9 1 2.1421 2.4816 -2.7082 10 1 0.2475 1.5866 -3.9288 11 1 0.1420 1.8042 -1.5160 12 6 2.0399 -0.7212 1.2493 13 8 1.5558 -0.0367 2.4348 14 6 1.9169 -0.5464 3.6229 15 8 2.6147 -1.5317 3.6708 16 6 1.4528 0.1109 4.8972 17 6 2.0008 -0.6620 6.0986 18 6 1.5291 0.0049 7.3923 19 6 2.0683 -0.7568 8.5756 20 6 1.3456 -1.8056 9.1239 21 6 1.8782 -2.4745 10.2150 22 6 3.1056 -2.0800 10.7135 23 7 3.7676 -1.0812 10.1631 24 6 3.2916 -0.4225 9.1244 25 1 -0.3634 0.6511 0.7950 26 1 -0.3633 0.3629 -0.9615 27 1 -0.3634 -1.0141 0.1664 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6988 -0.6297 -4.4268 32 1 3.1299 -0.7209 1.2496 33 1 1.6766 -1.7489 1.2493 34 1 0.3634 0.1103 4.9306 35 1 1.8168 1.1379 4.9296 36 1 3.0902 -0.6610 6.0651 37 1 1.6371 -1.6891 6.0662 38 1 0.4397 0.0036 7.4255 39 1 1.8924 1.0321 7.4249 40 1 0.3885 -2.0917 8.7133 41 1 1.3408 -3.2934 10.6701 42 1 3.5277 -2.5962 11.5631 43 1 3.8624 0.3905 8.7008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850950372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:56 Heat of formation + Delta-G solvation = -59.144338 kcal Electronic energy + Delta-G solvation = -22339.798999 eV Core-core repulsion = 18964.078348 eV Total energy + Delta-G solvation = -3375.720652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.52576 -40.06492 -37.08614 -35.63189 -35.02062 -32.63631 -31.83028 -31.64011 -28.03185 -26.34680 -26.08625 -24.93481 -23.88645 -23.53110 -21.57969 -20.35274 -19.15530 -17.52390 -17.23106 -16.84786 -16.26962 -16.02277 -15.96150 -15.32770 -15.13244 -14.78247 -14.33629 -13.82834 -13.39462 -13.37328 -13.24582 -12.93867 -12.75456 -12.41837 -12.34236 -12.10336 -11.95928 -11.83097 -11.60594 -11.53607 -11.00764 -10.53129 -10.36341 -10.27736 -10.11964 -10.08844 -10.02361 -9.75568 -9.74120 -9.26694 -9.11987 -8.66829 -8.48472 -6.17558 -4.15930 0.77687 0.95889 2.52059 3.09484 3.25656 3.33993 3.39125 3.50213 4.11427 4.34991 4.37292 4.44587 4.63693 4.66230 4.77994 4.84691 4.92128 5.11061 5.14255 5.24204 5.37285 5.42088 5.44206 5.52927 5.73872 5.77151 5.79540 5.89125 6.01646 6.03694 6.12542 6.26761 6.38214 6.51349 6.56391 6.68443 6.76090 6.86112 7.04930 7.20534 7.42484 7.65932 7.68794 8.14640 8.40279 8.84938 9.45847 10.95176 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044888 B = 0.002416 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.621673 B =11584.621747 C =11719.083459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.042 3.958 3 C -0.146 4.146 4 C -0.519 4.519 5 H 0.075 0.925 6 C 0.078 3.922 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.246 1.246 12 C 0.093 3.907 13 O -0.356 6.356 14 C 0.452 3.548 15 O -0.517 6.517 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.077 4.077 19 C -0.130 4.130 20 C -0.073 4.073 21 C -0.171 4.171 22 C 0.090 3.910 23 N -0.485 5.485 24 C 0.101 3.899 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 2.609 25.605 25.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.041 3.959 3 C -0.202 4.202 4 C -0.556 4.556 5 H 0.093 0.907 6 C -0.125 4.125 7 N -0.526 5.526 8 Si 0.718 3.282 9 H -0.212 1.212 10 H -0.233 1.233 11 H -0.172 1.172 12 C 0.021 3.979 13 O -0.272 6.272 14 C 0.295 3.705 15 O -0.407 6.407 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.115 4.115 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.191 4.191 22 C -0.067 4.067 23 N -0.193 5.193 24 C -0.056 4.056 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.171 0.829 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.374 2.517 25.713 25.945 hybrid contribution -1.008 0.424 -0.745 1.323 sum -3.382 2.941 24.968 25.367 Atomic orbital electron populations 1.22222 0.97403 0.99842 1.00202 1.18588 0.93132 0.92595 0.91548 1.22287 1.00677 0.98156 0.99126 1.20663 1.34539 1.12449 0.87988 0.90650 1.24921 0.94537 0.97459 0.95612 1.69938 1.47994 1.35966 0.98742 0.87281 0.79527 0.85332 0.76103 1.21232 1.23322 1.17211 1.23394 0.98588 0.95713 0.80246 1.86480 1.69392 1.56107 1.15198 1.23575 0.77775 0.82707 0.86410 1.90651 1.35785 1.25918 1.88310 1.21371 1.03430 1.01172 0.89281 1.21405 1.02084 0.99691 0.90941 1.20576 1.01179 0.98819 0.90946 1.20910 0.96343 0.97618 0.98281 1.21549 0.99796 0.93866 0.94723 1.22162 0.97661 1.01402 0.97849 1.22771 0.91859 0.93395 0.98690 1.67692 1.34779 1.07068 1.09745 1.22724 0.92842 0.98111 0.91902 0.94939 0.92712 0.93833 0.93204 0.94187 0.94093 0.92446 0.91856 0.91769 0.87851 0.87793 0.90687 0.90821 0.90329 0.90142 0.84764 0.84795 0.82889 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 7.58 37.16 0.28 -2.73 16 2 C 0.04 0.97 0.58 -155.66 -0.09 0.88 16 3 C -0.15 -3.13 7.55 37.16 0.28 -2.85 16 4 C -0.52 -14.19 8.62 -34.44 -0.30 -14.49 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.18 5.32 -17.82 -0.09 2.09 16 7 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 8 Si 0.89 21.40 22.79 -169.99 -3.87 17.53 16 9 H -0.28 -6.83 7.10 56.52 0.40 -6.43 16 10 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.25 -5.49 4.65 56.52 0.26 -5.23 16 12 C 0.09 1.94 4.25 37.16 0.16 2.10 16 13 O -0.36 -6.36 9.06 -39.26 -0.36 -6.72 16 14 C 0.45 7.06 7.96 36.01 0.29 7.34 16 15 O -0.52 -9.67 15.73 -18.75 -0.29 -9.96 16 16 C -0.11 -1.13 5.81 -27.88 -0.16 -1.29 16 17 C -0.10 -0.94 4.49 -26.73 -0.12 -1.06 16 18 C -0.08 -0.51 5.37 -27.88 -0.15 -0.66 16 19 C -0.13 -1.05 5.15 -104.48 -0.54 -1.59 16 20 C -0.07 -0.55 9.86 -39.28 -0.39 -0.94 16 21 C -0.17 -1.22 10.11 -39.44 -0.40 -1.62 16 22 C 0.09 0.75 11.18 -17.54 -0.20 0.55 16 23 N -0.48 -5.05 10.36 -13.25 -0.14 -5.19 16 24 C 0.10 0.93 10.86 -17.55 -0.19 0.73 16 25 H 0.03 0.62 7.94 -51.93 -0.41 0.21 16 26 H 0.05 1.23 4.30 -51.93 -0.22 1.01 16 27 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.89 2.25 -51.93 -0.12 0.78 16 30 H 0.04 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.06 1.35 8.13 -51.93 -0.42 0.92 16 33 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 36 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 39 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -32.74 347.35 -7.02 -39.76 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -6.75 Total: -1.19 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.62 Total: -13.52 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.64 Total: -31.13 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.65 Total: -16.68 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -3.87 Total: 17.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.74 -7.02 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850950372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.381 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds