Wall clock time and date at job start Tue Mar 31 2020 07:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.50697 * 109.47214 * 239.99501 * 2 1 3 5 5 H 1.08001 * 120.00040 * 241.36064 * 4 2 1 6 6 C 1.37872 * 120.00241 * 61.36275 * 4 2 1 7 7 N 1.31510 * 120.00725 * 193.96067 * 6 4 2 8 8 Si 1.86803 * 119.99752 * 13.96300 * 6 4 2 9 9 H 1.48502 * 109.47124 * 84.55615 * 8 6 4 10 10 H 1.48500 * 109.47344 * 204.55440 * 8 6 4 11 11 H 1.48498 * 109.47198 * 324.55665 * 8 6 4 12 12 C 1.53001 * 109.46837 * 119.99790 * 2 1 3 13 13 O 1.45200 * 109.47028 * 300.00095 * 12 2 1 14 14 C 1.34230 * 116.99984 * 180.02562 * 13 12 2 15 15 O 1.20828 * 120.00268 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00019 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47176 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47020 * 180.02562 * 17 16 14 19 19 C 1.50705 * 109.47014 * 179.97438 * 18 17 16 20 20 C 1.38677 * 120.41474 * 270.24616 * 19 18 17 21 21 C 1.38622 * 118.41644 * 180.24217 * 20 19 18 22 22 C 1.38225 * 119.16728 * 359.75401 * 21 20 19 23 23 N 1.31863 * 120.75743 * 359.97438 * 22 21 20 24 24 C 1.31880 * 121.72737 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.47722 * 309.31920 * 1 2 3 26 26 H 1.09002 * 109.47066 * 69.32242 * 1 2 3 27 27 H 1.09001 * 109.47466 * 189.31681 * 1 2 3 28 28 H 1.09006 * 109.46812 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47381 * 299.99323 * 3 2 1 30 30 H 1.09002 * 109.47571 * 59.99896 * 3 2 1 31 31 H 0.96994 * 120.00611 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47277 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47340 * 60.00131 * 12 2 1 34 34 H 1.08998 * 109.47568 * 59.99930 * 16 14 13 35 35 H 1.09009 * 109.46825 * 300.00160 * 16 14 13 36 36 H 1.08996 * 109.47244 * 59.99849 * 17 16 14 37 37 H 1.09004 * 109.46337 * 299.99823 * 17 16 14 38 38 H 1.08996 * 109.47506 * 59.99677 * 18 17 16 39 39 H 1.09004 * 109.47149 * 299.98993 * 18 17 16 40 40 H 1.08002 * 120.78881 * 359.97245 * 20 19 18 41 41 H 1.08009 * 120.41730 * 179.73140 * 21 20 19 42 42 H 1.08003 * 119.62417 * 180.02562 * 22 21 20 43 43 H 1.07998 * 119.61443 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6350 -1.6012 -1.1313 6 6 1.7226 -0.2234 -2.4825 7 7 1.9163 -0.9725 -3.5459 8 14 1.0279 1.5006 -2.6684 9 1 2.1421 2.4816 -2.7082 10 1 0.2475 1.5866 -3.9288 11 1 0.1420 1.8042 -1.5160 12 6 2.0399 -0.7212 1.2493 13 8 1.5558 -0.0367 2.4348 14 6 1.9169 -0.5464 3.6229 15 8 2.6147 -1.5317 3.6708 16 6 1.4528 0.1109 4.8972 17 6 2.0008 -0.6620 6.0986 18 6 1.5291 0.0049 7.3923 19 6 2.0683 -0.7568 8.5756 20 6 1.3456 -1.8056 9.1239 21 6 1.8782 -2.4745 10.2150 22 6 3.1056 -2.0800 10.7135 23 7 3.7676 -1.0812 10.1631 24 6 3.2916 -0.4225 9.1244 25 1 -0.3634 0.6511 0.7950 26 1 -0.3633 0.3629 -0.9615 27 1 -0.3634 -1.0141 0.1664 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6988 -0.6297 -4.4268 32 1 3.1299 -0.7209 1.2496 33 1 1.6766 -1.7489 1.2493 34 1 0.3634 0.1103 4.9306 35 1 1.8168 1.1379 4.9296 36 1 3.0902 -0.6610 6.0651 37 1 1.6371 -1.6891 6.0662 38 1 0.4397 0.0036 7.4255 39 1 1.8924 1.0321 7.4249 40 1 0.3885 -2.0917 8.7133 41 1 1.3408 -3.2934 10.6701 42 1 3.5277 -2.5962 11.5631 43 1 3.8624 0.3905 8.7008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850950372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:55 Heat of formation + Delta-G solvation = -78.814438 kcal Electronic energy + Delta-G solvation = -22340.651959 eV Core-core repulsion = 18964.078348 eV Total energy + Delta-G solvation = -3376.573611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48628 -41.02967 -38.63145 -36.79803 -36.22823 -33.86374 -33.26348 -32.37681 -28.97413 -28.01507 -27.50917 -26.97237 -24.47441 -24.37656 -22.29862 -21.44991 -20.94997 -18.71902 -17.99974 -17.91211 -17.71032 -17.35848 -17.26228 -16.96203 -15.93481 -15.76123 -15.03217 -14.95230 -14.92315 -14.64627 -14.38044 -14.09793 -13.91640 -13.75695 -13.66079 -13.46434 -13.32391 -12.88281 -12.62753 -12.42735 -12.25808 -12.13411 -11.99126 -11.86244 -11.66108 -11.44382 -11.41663 -11.06574 -10.69012 -10.63494 -10.41398 -10.34901 -9.85018 -8.34291 -6.37159 0.19931 0.38355 1.28966 1.36668 1.37778 1.50549 1.84382 2.32665 2.89262 3.01777 3.56776 3.71722 3.80326 3.93572 4.04824 4.09889 4.11046 4.13901 4.24290 4.27441 4.38870 4.46457 4.59182 4.64209 4.71583 4.78842 4.81162 4.84622 4.87088 4.94903 5.00244 5.10871 5.11293 5.17205 5.23976 5.36913 5.44634 5.45670 5.62273 5.68880 5.74316 5.84182 6.24405 6.65904 6.83107 7.06314 7.28198 8.82441 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044888 B = 0.002416 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.621673 B =11584.621747 C =11719.083459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.036 3.964 3 C -0.144 4.144 4 C -0.524 4.524 5 H 0.029 0.971 6 C 0.020 3.980 7 N -0.942 5.942 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.311 1.311 11 H -0.207 1.207 12 C 0.105 3.895 13 O -0.351 6.351 14 C 0.447 3.553 15 O -0.555 6.555 16 C -0.103 4.103 17 C -0.098 4.098 18 C -0.067 4.067 19 C -0.136 4.136 20 C -0.083 4.083 21 C -0.172 4.172 22 C 0.073 3.927 23 N -0.519 5.519 24 C 0.081 3.919 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.267 0.733 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.171 0.829 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 5.023 27.871 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.036 3.964 3 C -0.200 4.200 4 C -0.562 4.562 5 H 0.048 0.952 6 C -0.178 4.178 7 N -0.581 5.581 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.240 1.240 11 H -0.131 1.131 12 C 0.032 3.968 13 O -0.267 6.267 14 C 0.292 3.708 15 O -0.446 6.446 16 C -0.140 4.140 17 C -0.136 4.136 18 C -0.105 4.105 19 C -0.138 4.138 20 C -0.109 4.109 21 C -0.191 4.191 22 C -0.083 4.083 23 N -0.228 5.228 24 C -0.075 4.075 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.173 0.827 41 H 0.177 0.823 42 H 0.188 0.812 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.561 4.940 28.025 28.820 hybrid contribution -0.254 -0.492 -1.354 1.463 sum -4.815 4.448 26.671 27.464 Atomic orbital electron populations 1.22151 0.95818 1.00559 1.00858 1.18541 0.94306 0.93413 0.90178 1.22230 1.00632 0.96744 1.00433 1.20944 1.33523 1.11285 0.90429 0.95248 1.25810 0.95199 1.01694 0.95068 1.70087 1.50309 1.38265 0.99443 0.86327 0.79595 0.79825 0.77009 1.20614 1.24008 1.13113 1.22892 0.97569 0.94909 0.81475 1.86467 1.69436 1.55731 1.15104 1.24869 0.76672 0.82261 0.86970 1.90650 1.37580 1.27857 1.88554 1.21569 1.05179 1.01809 0.85413 1.21336 1.00878 0.99213 0.92190 1.20538 1.02341 0.99055 0.88522 1.21098 0.96015 0.97972 0.98727 1.21924 1.00608 0.93580 0.94745 1.22476 0.97264 1.01745 0.97626 1.23180 0.92548 0.93266 0.99352 1.67666 1.36031 1.08266 1.10791 1.22994 0.93710 0.98697 0.92141 0.91599 0.93581 0.94177 0.93577 0.94641 0.90697 0.92429 0.93294 0.93438 0.84764 0.84833 0.92644 0.92417 0.88213 0.88406 0.82749 0.82307 0.81174 0.81942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 7.58 71.98 0.55 -4.97 16 2 C 0.04 1.63 0.58 -52.93 -0.03 1.59 16 3 C -0.14 -5.73 7.55 71.98 0.54 -5.19 16 4 C -0.52 -29.42 8.62 25.60 0.22 -29.20 16 5 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 6 C 0.02 1.16 5.32 84.65 0.45 1.61 16 7 N -0.94 -58.52 13.96 21.44 0.30 -58.22 16 8 Si 0.94 43.27 22.79 68.60 1.56 44.83 16 9 H -0.28 -12.48 7.10 99.48 0.71 -11.77 16 10 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 11 H -0.21 -8.22 4.65 99.48 0.46 -7.76 16 12 C 0.11 4.37 4.25 71.98 0.31 4.67 16 13 O -0.35 -11.68 9.06 -51.42 -0.47 -12.15 16 14 C 0.45 13.04 7.96 71.24 0.57 13.60 16 15 O -0.56 -20.67 15.73 21.96 0.35 -20.33 16 16 C -0.10 -1.61 5.81 29.85 0.17 -1.43 16 17 C -0.10 -1.56 4.49 30.59 0.14 -1.42 16 18 C -0.07 -0.65 5.37 29.85 0.16 -0.49 16 19 C -0.14 -1.94 5.15 -19.77 -0.10 -2.05 16 20 C -0.08 -1.06 9.86 22.47 0.22 -0.84 16 21 C -0.17 -2.15 10.11 22.36 0.23 -1.93 16 22 C 0.07 1.16 11.18 84.69 0.95 2.10 16 23 N -0.52 -10.68 10.36 -195.84 -2.03 -12.71 16 24 C 0.08 1.42 10.86 84.67 0.92 2.34 16 25 H 0.07 2.22 7.94 -2.39 -0.02 2.20 16 26 H 0.05 1.92 4.30 -2.39 -0.01 1.91 16 27 H 0.04 1.61 8.12 -2.39 -0.02 1.59 16 28 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.04 1.45 2.25 -2.39 -0.01 1.44 16 30 H 0.07 2.48 7.68 -2.39 -0.02 2.46 16 31 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 32 H 0.05 2.13 8.13 -2.39 -0.02 2.11 16 33 H 0.05 2.09 8.13 -2.39 -0.02 2.07 16 34 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 37 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.10 0.60 8.10 -2.39 -0.02 0.58 16 39 H 0.10 0.65 8.09 -2.39 -0.02 0.63 16 40 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -74.53 347.35 5.74 -68.79 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.74 Total: 11.38 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 5.29 Total: -21.60 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.73 Total: -70.93 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.12 Total: -32.47 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.56 Total: 44.83 kcal Total: -74.53 5.74 -68.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850950372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.027 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds