Wall clock time and date at job start Tue Mar 31 2020 07:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35627 * 119.99691 * 2 1 4 4 C 1.41548 * 120.00471 * 7.24532 * 3 2 1 5 5 O 1.21780 * 119.99478 * 6.05128 * 4 3 2 6 6 N 1.34774 * 120.00284 * 186.05277 * 4 3 2 7 7 C 1.46498 * 120.00011 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47179 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.46780 * 299.99948 * 8 7 6 10 10 C 1.52994 * 109.47672 * 59.99905 * 8 7 6 11 11 C 1.53000 * 109.47253 * 180.02562 * 8 7 6 12 12 C 1.50697 * 109.47212 * 179.97438 * 11 8 7 13 13 H 1.07995 * 120.00278 * 359.97438 * 12 11 8 14 14 C 1.37885 * 120.00112 * 179.97438 * 12 11 8 15 15 N 1.31519 * 119.99783 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00019 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46752 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46886 * 120.00007 * 16 14 12 19 19 H 1.48498 * 109.46730 * 239.99706 * 16 14 12 20 20 C 1.41600 * 120.00220 * 180.02562 * 2 1 3 21 21 C 1.37956 * 126.10234 * 294.98324 * 20 2 1 22 22 C 1.40314 * 106.52683 * 180.02562 * 21 20 2 23 23 C 1.35155 * 107.20935 * 359.97438 * 22 21 20 24 24 O 1.34023 * 109.03200 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.46736 * 275.52525 * 1 2 3 26 26 H 1.08997 * 109.47175 * 35.52572 * 1 2 3 27 27 H 1.09005 * 109.47034 * 155.52695 * 1 2 3 28 28 H 1.08007 * 119.99497 * 187.24557 * 3 2 1 29 29 H 0.97001 * 119.99983 * 0.02562 * 6 4 3 30 30 H 1.09005 * 109.47153 * 300.00459 * 7 6 4 31 31 H 1.09001 * 109.46968 * 60.00476 * 7 6 4 32 32 H 1.08995 * 109.47484 * 60.00269 * 9 8 7 33 33 H 1.09009 * 109.46910 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47355 * 300.00063 * 9 8 7 35 35 H 1.09005 * 109.46825 * 59.99986 * 10 8 7 36 36 H 1.08996 * 109.47763 * 180.02562 * 10 8 7 37 37 H 1.09007 * 109.47259 * 300.00559 * 10 8 7 38 38 H 1.09005 * 109.46775 * 299.99727 * 11 8 7 39 39 H 1.09001 * 109.47272 * 59.99698 * 11 8 7 40 40 H 0.96998 * 119.99767 * 180.02562 * 15 14 12 41 41 H 1.07993 * 126.73563 * 0.02562 * 21 20 2 42 42 H 1.08002 * 126.39672 * 180.02562 * 22 21 20 43 43 H 1.07998 * 125.47952 * 180.26237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4859 2.3956 0.1546 5 8 0.2926 2.3872 0.3975 6 7 2.1407 3.5673 0.0329 7 6 1.4168 4.8309 0.1924 8 6 2.3854 6.0005 0.0062 9 6 3.4970 5.9137 1.0540 10 6 2.9985 5.9372 -1.3941 11 6 1.6296 7.3202 0.1734 12 6 2.5837 8.4722 -0.0094 13 1 3.6252 8.2822 -0.2229 14 6 2.1272 9.7690 0.0961 15 7 0.8588 10.0005 0.3557 16 14 3.3099 11.1970 -0.1311 17 1 4.6704 10.6728 -0.4127 18 1 2.8576 12.0380 -1.2684 19 1 3.3416 12.0153 1.1077 20 6 2.2151 -1.2263 -0.0005 21 6 2.2138 -2.1661 1.0094 22 6 3.0473 -3.2112 0.5830 23 6 3.5132 -2.8773 -0.6410 24 8 3.0116 -1.6841 -0.9889 25 1 -0.3632 0.0989 1.0229 26 1 -0.3633 0.8363 -0.5971 27 1 -0.3633 -0.9354 -0.4257 28 1 3.2587 1.1783 -0.1180 29 1 3.0911 3.5739 -0.1610 30 1 0.6251 4.8928 -0.5543 31 1 0.9798 4.8759 1.1899 32 1 4.0356 4.9736 0.9354 33 1 4.1869 6.7473 0.9217 34 1 3.0603 5.9589 2.0517 35 1 2.2065 5.9990 -2.1405 36 1 3.6889 6.7702 -1.5266 37 1 3.5371 4.9969 -1.5128 38 1 0.8374 7.3822 -0.5728 39 1 1.1931 7.3651 1.1712 40 1 0.5375 10.9127 0.4295 41 1 1.6768 -2.1086 1.9445 42 1 3.2737 -4.1143 1.1303 43 1 4.1791 -3.4773 -1.2434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854474680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:01 Heat of formation + Delta-G solvation = -19.677677 kcal Electronic energy + Delta-G solvation = -22587.692243 eV Core-core repulsion = 19213.682994 eV Total energy + Delta-G solvation = -3374.009249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.80348 -39.96620 -37.36295 -35.24810 -33.61565 -33.23018 -32.11844 -29.38264 -28.33686 -27.04176 -26.50801 -25.94957 -23.69797 -22.57027 -21.96250 -20.62019 -19.58762 -18.19455 -17.33620 -16.88041 -16.36377 -16.25807 -15.50622 -15.16847 -14.84182 -14.44230 -13.97747 -13.73964 -13.38263 -13.23504 -13.10376 -13.03670 -12.75531 -12.66317 -12.61112 -12.09932 -12.06645 -11.84616 -11.14580 -11.02391 -10.83587 -10.64418 -10.40358 -10.27701 -10.23897 -9.87678 -9.66389 -9.62593 -9.16449 -8.91559 -8.73287 -8.47549 -8.36257 -6.00178 -4.01284 0.64608 1.43208 2.26855 2.77197 3.30009 3.38099 3.40354 3.41100 3.61167 4.44818 4.47812 4.63657 4.76154 4.79581 5.16511 5.29740 5.35445 5.44744 5.50676 5.54177 5.63203 5.69250 5.70639 5.75065 5.87012 6.04576 6.15501 6.17803 6.23787 6.27288 6.37447 6.40072 6.58719 6.63341 6.74185 6.78199 7.06594 7.07628 7.13171 7.64192 7.76044 7.76433 7.98801 8.39172 8.43141 9.03758 9.61854 11.11319 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038778 B = 0.002583 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.889991 B =10838.210649 C =11226.407307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.028 3.972 3 C -0.188 4.188 4 C 0.537 3.463 5 O -0.542 6.542 6 N -0.716 5.716 7 C 0.128 3.872 8 C -0.073 4.073 9 C -0.127 4.127 10 C -0.127 4.127 11 C 0.035 3.965 12 C -0.510 4.510 13 H 0.060 0.940 14 C 0.055 3.945 15 N -0.894 5.894 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.006 3.994 21 C -0.180 4.180 22 C -0.212 4.212 23 C -0.039 4.039 24 O -0.162 6.162 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.128 0.872 29 H 0.399 0.601 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.259 0.741 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 -24.617 -1.018 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.026 3.974 3 C -0.209 4.209 4 C 0.328 3.672 5 O -0.423 6.423 6 N -0.367 5.367 7 C 0.005 3.995 8 C -0.073 4.073 9 C -0.185 4.185 10 C -0.185 4.185 11 C -0.002 4.002 12 C -0.548 4.548 13 H 0.078 0.922 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.044 4.044 21 C -0.199 4.199 22 C -0.232 4.232 23 C -0.107 4.107 24 O -0.058 6.058 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.234 0.766 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.171 0.829 42 H 0.169 0.831 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.291 -24.278 -1.090 24.678 hybrid contribution 1.262 0.703 -0.031 1.445 sum 5.553 -23.575 -1.121 24.246 Atomic orbital electron populations 1.21138 0.88426 1.02878 1.04205 1.19209 0.96081 0.88231 0.93893 1.22152 1.00863 0.92575 1.05301 1.16929 0.87304 0.84389 0.78625 1.90813 1.14904 1.87977 1.48610 1.46165 1.13023 1.06221 1.71270 1.21626 0.94952 0.81376 1.01523 1.20902 0.95353 0.95959 0.95095 1.21766 0.98450 0.99774 0.98474 1.21764 1.00598 0.99798 0.96300 1.19099 0.95074 0.88659 0.97383 1.21221 0.95249 0.90524 1.47826 0.92216 1.25025 0.94998 0.98991 0.95558 1.69977 1.13791 1.20238 1.49378 0.86591 0.81284 0.82776 0.77668 1.19812 1.21136 1.21141 1.19833 0.98205 0.96920 0.89417 1.22175 1.03516 0.93699 1.00509 1.21738 1.02652 1.01632 0.97131 1.24230 1.02320 0.86217 0.97975 1.84194 1.49363 1.31338 1.40871 0.89625 0.88106 0.92557 0.85433 0.76608 0.91738 0.91715 0.95255 0.91436 0.93357 0.93353 0.91439 0.95252 0.96320 0.96324 0.93102 0.82921 0.83103 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 8.43 36.01 0.30 -0.96 16 2 C 0.03 0.33 5.77 -104.27 -0.60 -0.27 16 3 C -0.19 -2.28 9.46 -39.25 -0.37 -2.65 16 4 C 0.54 7.98 7.43 -15.00 -0.11 7.87 16 5 O -0.54 -9.53 13.16 5.12 0.07 -9.46 16 6 N -0.72 -10.43 4.95 -63.24 -0.31 -10.74 16 7 C 0.13 2.25 4.56 -4.04 -0.02 2.23 16 8 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 9 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 10 C -0.13 -2.23 8.05 37.15 0.30 -1.93 16 11 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 12 C -0.51 -13.50 7.65 -34.44 -0.26 -13.77 16 13 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 14 C 0.06 1.54 5.46 -17.81 -0.10 1.44 16 15 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 16 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.01 0.07 6.34 -38.40 -0.24 -0.18 16 21 C -0.18 -1.70 10.90 -38.90 -0.42 -2.13 16 22 C -0.21 -1.67 10.87 -39.90 -0.43 -2.10 16 23 C -0.04 -0.30 12.06 29.64 0.36 0.06 16 24 O -0.16 -1.72 10.67 4.67 0.05 -1.67 16 25 H 0.09 0.98 8.03 -51.93 -0.42 0.57 16 26 H 0.10 1.34 6.16 -51.93 -0.32 1.02 16 27 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 28 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 29 H 0.40 4.97 6.12 -40.82 -0.25 4.72 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 33 H 0.07 1.27 6.62 -51.92 -0.34 0.93 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 37 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.20 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -31.11 352.94 -7.13 -38.24 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.47 Total: 2.83 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.50 Total: -15.03 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.42 Total: -36.40 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.12 Total: -11.13 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.11 -7.13 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854474680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.566 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds