Wall clock time and date at job start Tue Mar 31 2020 07:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35627 * 119.99691 * 2 1 4 4 C 1.41548 * 120.00471 * 7.24532 * 3 2 1 5 5 O 1.21780 * 119.99478 * 6.05128 * 4 3 2 6 6 N 1.34774 * 120.00284 * 186.05277 * 4 3 2 7 7 C 1.46498 * 120.00011 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47179 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.46780 * 299.99948 * 8 7 6 10 10 C 1.52994 * 109.47672 * 59.99905 * 8 7 6 11 11 C 1.53000 * 109.47253 * 180.02562 * 8 7 6 12 12 C 1.50697 * 109.47212 * 179.97438 * 11 8 7 13 13 H 1.07995 * 120.00278 * 359.97438 * 12 11 8 14 14 C 1.37885 * 120.00112 * 179.97438 * 12 11 8 15 15 N 1.31519 * 119.99783 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00019 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46752 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46886 * 120.00007 * 16 14 12 19 19 H 1.48498 * 109.46730 * 239.99706 * 16 14 12 20 20 C 1.41600 * 120.00220 * 180.02562 * 2 1 3 21 21 C 1.37956 * 126.10234 * 294.98324 * 20 2 1 22 22 C 1.40314 * 106.52683 * 180.02562 * 21 20 2 23 23 C 1.35155 * 107.20935 * 359.97438 * 22 21 20 24 24 O 1.34023 * 109.03200 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.46736 * 275.52525 * 1 2 3 26 26 H 1.08997 * 109.47175 * 35.52572 * 1 2 3 27 27 H 1.09005 * 109.47034 * 155.52695 * 1 2 3 28 28 H 1.08007 * 119.99497 * 187.24557 * 3 2 1 29 29 H 0.97001 * 119.99983 * 0.02562 * 6 4 3 30 30 H 1.09005 * 109.47153 * 300.00459 * 7 6 4 31 31 H 1.09001 * 109.46968 * 60.00476 * 7 6 4 32 32 H 1.08995 * 109.47484 * 60.00269 * 9 8 7 33 33 H 1.09009 * 109.46910 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47355 * 300.00063 * 9 8 7 35 35 H 1.09005 * 109.46825 * 59.99986 * 10 8 7 36 36 H 1.08996 * 109.47763 * 180.02562 * 10 8 7 37 37 H 1.09007 * 109.47259 * 300.00559 * 10 8 7 38 38 H 1.09005 * 109.46775 * 299.99727 * 11 8 7 39 39 H 1.09001 * 109.47272 * 59.99698 * 11 8 7 40 40 H 0.96998 * 119.99767 * 180.02562 * 15 14 12 41 41 H 1.07993 * 126.73563 * 0.02562 * 21 20 2 42 42 H 1.08002 * 126.39672 * 180.02562 * 22 21 20 43 43 H 1.07998 * 125.47952 * 180.26237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4859 2.3956 0.1546 5 8 0.2926 2.3872 0.3975 6 7 2.1407 3.5673 0.0329 7 6 1.4168 4.8309 0.1924 8 6 2.3854 6.0005 0.0062 9 6 3.4970 5.9137 1.0540 10 6 2.9985 5.9372 -1.3941 11 6 1.6296 7.3202 0.1734 12 6 2.5837 8.4722 -0.0094 13 1 3.6252 8.2822 -0.2229 14 6 2.1272 9.7690 0.0961 15 7 0.8588 10.0005 0.3557 16 14 3.3099 11.1970 -0.1311 17 1 4.6704 10.6728 -0.4127 18 1 2.8576 12.0380 -1.2684 19 1 3.3416 12.0153 1.1077 20 6 2.2151 -1.2263 -0.0005 21 6 2.2138 -2.1661 1.0094 22 6 3.0473 -3.2112 0.5830 23 6 3.5132 -2.8773 -0.6410 24 8 3.0116 -1.6841 -0.9889 25 1 -0.3632 0.0989 1.0229 26 1 -0.3633 0.8363 -0.5971 27 1 -0.3633 -0.9354 -0.4257 28 1 3.2587 1.1783 -0.1180 29 1 3.0911 3.5739 -0.1610 30 1 0.6251 4.8928 -0.5543 31 1 0.9798 4.8759 1.1899 32 1 4.0356 4.9736 0.9354 33 1 4.1869 6.7473 0.9217 34 1 3.0603 5.9589 2.0517 35 1 2.2065 5.9990 -2.1405 36 1 3.6889 6.7702 -1.5266 37 1 3.5371 4.9969 -1.5128 38 1 0.8374 7.3822 -0.5728 39 1 1.1931 7.3651 1.1712 40 1 0.5375 10.9127 0.4295 41 1 1.6768 -2.1086 1.9445 42 1 3.2737 -4.1143 1.1303 43 1 4.1791 -3.4773 -1.2434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854474680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:00 Heat of formation + Delta-G solvation = -37.888670 kcal Electronic energy + Delta-G solvation = -22588.481931 eV Core-core repulsion = 19213.682994 eV Total energy + Delta-G solvation = -3374.798937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47445 -41.18081 -38.85802 -36.25398 -35.20084 -33.97569 -33.87158 -30.28316 -29.39693 -28.84402 -27.95707 -27.29180 -25.12741 -23.94505 -22.59721 -21.69073 -20.58843 -19.61093 -18.38746 -18.19800 -17.90899 -17.07515 -16.56400 -16.53570 -16.35419 -15.78815 -15.24576 -15.07699 -14.67564 -14.46620 -14.21385 -13.99416 -13.93697 -13.86504 -13.59809 -13.49333 -13.34024 -12.89129 -12.77533 -12.69418 -12.57172 -12.33848 -12.22493 -11.94562 -11.52941 -11.07886 -10.93533 -10.86609 -10.68029 -10.58953 -10.51697 -9.93857 -9.24904 -8.13752 -6.21272 -0.25703 0.71024 1.41818 1.42894 1.54624 1.65293 2.02419 2.30537 2.42188 2.49565 3.20778 3.75300 3.85811 3.98150 4.05875 4.09946 4.19819 4.22498 4.25448 4.44004 4.68424 4.72549 4.74014 4.77078 4.84365 4.93719 4.97243 4.97563 5.08613 5.12011 5.12949 5.18865 5.37676 5.44839 5.50366 5.50719 5.54378 5.56949 5.59556 5.81049 5.90691 6.08900 6.31143 6.61093 6.94147 7.26007 7.46368 8.98977 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038778 B = 0.002583 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.889991 B =10838.210649 C =11226.407307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.043 3.957 3 C -0.200 4.200 4 C 0.538 3.462 5 O -0.576 6.576 6 N -0.706 5.706 7 C 0.143 3.857 8 C -0.064 4.064 9 C -0.122 4.122 10 C -0.122 4.122 11 C 0.039 3.961 12 C -0.511 4.511 13 H 0.072 0.928 14 C -0.007 4.007 15 N -0.939 5.939 16 Si 0.959 3.041 17 H -0.257 1.257 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.028 4.028 21 C -0.178 4.178 22 C -0.223 4.223 23 C -0.029 4.029 24 O -0.178 6.178 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.412 0.588 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.068 0.932 38 H -0.014 1.014 39 H -0.013 1.013 40 H 0.259 0.741 41 H 0.161 0.839 42 H 0.176 0.824 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.069 -26.978 -1.486 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.040 3.960 3 C -0.220 4.220 4 C 0.330 3.670 5 O -0.459 6.459 6 N -0.358 5.358 7 C 0.018 3.982 8 C -0.065 4.065 9 C -0.179 4.179 10 C -0.179 4.179 11 C 0.001 3.999 12 C -0.549 4.549 13 H 0.090 0.910 14 C -0.203 4.203 15 N -0.580 5.580 16 Si 0.784 3.216 17 H -0.181 1.181 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.077 4.077 21 C -0.197 4.197 22 C -0.242 4.242 23 C -0.097 4.097 24 O -0.074 6.074 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.169 0.831 29 H 0.250 0.750 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.005 0.995 39 H 0.005 0.995 40 H 0.068 0.932 41 H 0.179 0.821 42 H 0.193 0.807 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 7.198 -26.656 -1.563 27.655 hybrid contribution 0.327 1.268 0.125 1.315 sum 7.525 -25.389 -1.438 26.519 Atomic orbital electron populations 1.21076 0.88907 1.02809 1.03701 1.19282 0.95977 0.88813 0.91881 1.22080 1.01793 0.91156 1.07002 1.17343 0.86935 0.85082 0.77641 1.90809 1.16542 1.88412 1.50163 1.45926 1.13483 1.05001 1.71434 1.21199 0.94436 0.82515 1.00008 1.20700 0.95491 0.93333 0.96963 1.21700 0.97624 1.01421 0.97182 1.21698 1.00189 1.01443 0.94602 1.18985 0.94590 0.91899 0.94408 1.21619 0.95964 0.91016 1.46341 0.90964 1.25961 0.96594 1.02201 0.95578 1.70130 1.15969 1.20777 1.51116 0.85486 0.79633 0.79107 0.77358 1.18061 1.21068 1.21064 1.19713 1.00081 0.97339 0.90566 1.22481 1.03160 0.93645 1.00417 1.22097 1.02378 1.02137 0.97540 1.25087 1.01279 0.85110 0.98210 1.84181 1.49605 1.32588 1.41057 0.89935 0.90183 0.90913 0.83108 0.74982 0.93459 0.93429 0.91256 0.92587 0.94393 0.94405 0.92580 0.91277 0.99522 0.99512 0.93194 0.82120 0.80667 0.74169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 8.43 71.24 0.60 -1.89 16 2 C 0.04 0.96 5.77 -19.64 -0.11 0.85 16 3 C -0.20 -4.57 9.46 22.48 0.21 -4.36 16 4 C 0.54 15.73 7.43 85.06 0.63 16.37 16 5 O -0.58 -20.73 13.16 -4.60 -0.06 -20.79 16 6 N -0.71 -19.80 4.95 -472.19 -2.34 -22.14 16 7 C 0.14 5.11 4.56 86.38 0.39 5.50 16 8 C -0.06 -2.44 0.54 -52.18 -0.03 -2.47 16 9 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 10 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 11 C 0.04 1.98 4.04 29.85 0.12 2.10 16 12 C -0.51 -27.45 7.65 25.60 0.20 -27.25 16 13 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 14 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 15 N -0.94 -57.26 13.29 21.45 0.28 -56.98 16 16 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 17 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 C -0.03 -0.56 6.34 23.03 0.15 -0.41 16 21 C -0.18 -2.99 10.90 22.71 0.25 -2.74 16 22 C -0.22 -2.79 10.87 22.06 0.24 -2.55 16 23 C -0.03 -0.34 12.06 67.11 0.81 0.47 16 24 O -0.18 -3.35 10.67 -6.20 -0.07 -3.41 16 25 H 0.08 1.92 8.03 -2.39 -0.02 1.90 16 26 H 0.08 2.20 6.16 -2.39 -0.01 2.18 16 27 H 0.07 1.37 8.06 -2.38 -0.02 1.35 16 28 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.41 9.13 6.12 -92.71 -0.57 8.56 16 30 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 33 H 0.06 2.02 6.62 -2.38 -0.02 2.01 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 37 H 0.07 1.78 6.86 -2.38 -0.02 1.76 16 38 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 39 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 42 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.24 0.68 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -69.99 352.94 5.37 -64.62 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.44 Total: 16.32 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 5.08 Total: -23.38 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.05 Total: -79.12 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.13 Total: -24.20 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -69.99 5.37 -64.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854474680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.731 kcal (2) G-P(sol) polarization free energy of solvation -69.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds