Wall clock time and date at job start Tue Mar 31 2020 07:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47444 * 2 1 4 4 H 1.09003 * 109.47033 * 304.99275 * 3 2 1 5 5 C 1.52997 * 109.47315 * 64.99596 * 3 2 1 6 6 C 1.53001 * 109.47415 * 185.00039 * 3 2 1 7 7 C 1.53003 * 109.47437 * 174.99888 * 6 3 2 8 8 N 1.46496 * 109.47208 * 179.97438 * 7 6 3 9 9 C 1.34773 * 119.99950 * 179.97438 * 8 7 6 10 10 O 1.21592 * 120.00358 * 0.02562 * 9 8 7 11 11 C 1.47536 * 120.00250 * 180.02562 * 9 8 7 12 12 C 1.39673 * 120.19308 * 0.27711 * 11 9 8 13 13 C 1.37829 * 119.91662 * 180.30027 * 12 11 9 14 14 C 1.38573 * 120.32162 * 359.69830 * 13 12 11 15 15 C 1.38023 * 120.40656 * 0.02562 * 14 13 12 16 16 C 1.38834 * 120.06654 * 0.02562 * 15 14 13 17 17 O 1.35526 * 120.15695 * 179.97438 * 16 15 14 18 18 C 1.34813 * 117.00333 * 5.59555 * 17 16 15 19 19 H 1.08003 * 119.99735 * 354.93364 * 18 17 16 20 20 C 1.38696 * 119.99881 * 174.93689 * 18 17 16 21 21 N 1.31516 * 120.00523 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99750 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47507 * 59.99568 * 22 20 18 24 24 H 1.48492 * 109.47109 * 179.97438 * 22 20 18 25 25 H 1.48509 * 109.46909 * 299.99839 * 22 20 18 26 26 H 1.08999 * 109.47336 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46989 * 300.00824 * 1 2 3 28 28 H 1.09008 * 109.46423 * 60.00371 * 1 2 3 29 29 H 1.09002 * 109.47651 * 239.99377 * 2 1 3 30 30 H 1.09010 * 109.47162 * 119.99570 * 2 1 3 31 31 H 1.08997 * 109.46945 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47294 * 300.00128 * 5 3 2 33 33 H 1.08999 * 109.47438 * 60.00377 * 5 3 2 34 34 H 1.08998 * 109.47254 * 54.99286 * 6 3 2 35 35 H 1.09006 * 109.46895 * 294.99625 * 6 3 2 36 36 H 1.08997 * 109.46877 * 59.99386 * 7 6 3 37 37 H 1.09006 * 109.46863 * 299.99756 * 7 6 3 38 38 H 0.96999 * 120.00188 * 0.02562 * 8 7 6 39 39 H 1.07997 * 120.04439 * 0.02562 * 12 11 9 40 40 H 1.07997 * 119.83927 * 179.72258 * 13 12 11 41 41 H 1.08006 * 119.79576 * 180.02562 * 14 13 12 42 42 H 1.07998 * 119.96858 * 180.02562 * 15 14 13 43 43 H 0.97001 * 120.00147 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4443 -0.1257 7 6 4.0646 2.8849 -0.2512 8 7 5.5247 2.8866 -0.3709 9 6 6.1893 4.0526 -0.4943 10 8 5.5772 5.1031 -0.5057 11 6 7.6597 4.0544 -0.6155 12 6 8.3665 2.8497 -0.6086 13 6 9.7406 2.8583 -0.7160 14 6 10.4253 4.0570 -0.8371 15 6 9.7398 5.2548 -0.8511 16 6 8.3557 5.2654 -0.7430 17 8 7.6808 6.4406 -0.7559 18 6 8.3992 7.5565 -0.9927 19 1 9.4741 7.4983 -1.0798 20 6 7.7578 8.7792 -1.1243 21 7 6.4488 8.8500 -1.0186 22 14 8.7533 10.3254 -1.4531 23 1 9.4990 10.1723 -2.7281 24 1 7.8388 11.4911 -1.5520 25 1 9.7134 10.5417 -0.3410 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.9983 3.1543 1.3070 32 1 0.5490 2.1253 1.3968 33 1 2.0698 1.5876 2.1492 34 1 3.8571 0.8799 -1.0112 35 1 4.0030 0.9835 0.7597 36 1 3.7723 3.4492 0.6344 37 1 3.6265 3.3456 -1.1366 38 1 6.0130 2.0486 -0.3622 39 1 7.8375 1.9129 -0.5149 40 1 10.2862 1.9264 -0.7061 41 1 11.5021 4.0538 -0.9211 42 1 10.2806 6.1848 -0.9462 43 1 6.0003 9.7051 -1.1111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855387009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:34 Heat of formation + Delta-G solvation = -58.911228 kcal Electronic energy + Delta-G solvation = -22758.839533 eV Core-core repulsion = 19383.128990 eV Total energy + Delta-G solvation = -3375.710543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.56711 -38.27014 -37.22434 -36.30023 -34.13049 -32.32145 -31.36889 -30.16994 -28.90084 -27.89398 -25.50691 -25.13508 -23.06753 -21.94056 -21.15467 -20.29158 -19.57981 -18.01790 -17.47676 -16.09628 -15.69009 -15.59812 -14.86397 -14.63124 -14.46493 -14.17403 -14.05108 -13.81146 -13.64836 -13.53927 -13.13443 -12.63469 -12.55925 -12.44933 -12.07317 -11.83561 -11.72045 -11.68254 -11.33208 -11.11137 -11.09842 -10.86926 -10.81646 -10.76109 -10.64763 -10.53460 -10.45561 -9.54893 -8.85830 -8.79935 -8.47857 -8.23840 -7.28650 -6.42176 -4.02293 1.74600 2.34071 3.12842 3.15079 3.17451 3.74320 3.79801 3.95302 4.61297 4.66762 4.71059 4.78581 5.08677 5.10026 5.17448 5.20820 5.34819 5.43111 5.45663 5.50635 5.55309 5.59879 5.67842 5.74758 5.80285 5.87733 5.89357 5.97824 6.04769 6.06110 6.14163 6.19234 6.32489 6.35272 6.58588 6.71772 6.93440 7.03279 7.08206 7.26128 7.31155 7.71693 7.94448 8.18795 8.97230 9.15787 9.70076 10.71598 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.003579 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.019361 B = 7822.490890 C = 9349.928878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.089 4.089 4 H 0.073 0.927 5 C -0.154 4.154 6 C -0.125 4.125 7 C 0.123 3.877 8 N -0.745 5.745 9 C 0.552 3.448 10 O -0.502 6.502 11 C -0.227 4.227 12 C -0.039 4.039 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.238 4.238 16 C 0.189 3.811 17 O -0.124 6.124 18 C -0.405 4.405 19 H 0.093 0.907 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.391 0.609 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 -15.775 1.783 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.109 4.109 4 H 0.092 0.908 5 C -0.211 4.211 6 C -0.163 4.163 7 C -0.001 4.001 8 N -0.401 5.401 9 C 0.342 3.658 10 O -0.376 6.376 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.251 4.251 14 C -0.070 4.070 15 C -0.258 4.258 16 C 0.129 3.871 17 O -0.022 6.022 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.225 0.775 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.210 -14.673 1.800 15.674 hybrid contribution 0.894 0.258 -0.171 0.946 sum -4.317 -14.415 1.629 15.135 Atomic orbital electron populations 1.21827 0.95987 1.01332 1.02024 1.21568 0.95842 0.96316 1.01876 1.21096 0.94617 0.96195 0.98944 0.90843 1.21966 1.01178 1.01120 0.96812 1.21848 0.95659 0.96502 1.02323 1.21263 0.80666 0.96167 1.02035 1.45904 1.06911 1.08863 1.78410 1.18241 0.87381 0.83324 0.76888 1.90945 1.68900 1.30378 1.47404 1.18879 0.92103 0.91911 1.20258 1.20760 0.94176 0.95164 0.95645 1.20457 0.93921 0.97285 1.13394 1.20891 0.98637 0.92277 0.95193 1.21155 0.93819 0.98868 1.11914 1.19287 0.90206 0.86853 0.90750 1.84178 1.34949 1.10823 1.72218 1.21451 0.91740 0.83539 1.51305 0.88940 1.25380 0.96014 0.98629 0.96280 1.70120 1.07595 1.26369 1.42337 0.85801 0.78880 0.79557 0.79290 1.19380 1.20164 1.19375 0.93042 0.92442 0.92755 0.92074 0.92061 0.91967 0.92585 0.92751 0.91474 0.91448 0.91696 0.92030 0.77498 0.87072 0.87305 0.87209 0.85094 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -0.94 5.40 -26.73 -0.14 -1.08 16 3 C -0.09 -0.84 2.39 -90.62 -0.22 -1.06 16 4 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -1.48 8.70 37.16 0.32 -1.16 16 6 C -0.13 -1.29 4.80 -26.73 -0.13 -1.42 16 7 C 0.12 1.79 5.43 -4.04 -0.02 1.77 16 8 N -0.75 -12.32 5.51 -61.35 -0.34 -12.66 16 9 C 0.55 12.45 7.76 -12.47 -0.10 12.35 16 10 O -0.50 -14.08 15.17 -16.57 -0.25 -14.33 16 11 C -0.23 -5.02 5.89 -104.81 -0.62 -5.63 16 12 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 13 C -0.23 -3.84 10.03 -39.61 -0.40 -4.24 16 14 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 15 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 16 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 17 O -0.12 -3.70 7.84 -21.07 -0.17 -3.87 16 18 C -0.40 -11.58 9.49 30.90 0.29 -11.29 16 19 H 0.09 2.39 5.21 -52.48 -0.27 2.12 16 20 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 21 N -0.83 -25.37 13.67 55.48 0.76 -24.62 16 22 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 28 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 32 H 0.06 0.49 6.56 -51.93 -0.34 0.14 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.03 6.57 -51.93 -0.34 0.69 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.39 5.13 6.50 -40.82 -0.27 4.87 16 39 H 0.11 1.48 6.40 -52.49 -0.34 1.15 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -34.53 351.20 -8.18 -42.71 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.32 Total: 6.57 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.13 Total: -14.77 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.42 Total: -37.28 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.42 Total: -18.20 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.53 -8.18 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855387009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.205 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds