Wall clock time and date at job start Tue Mar 31 2020 07:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47444 * 2 1 4 4 H 1.09003 * 109.47033 * 304.99275 * 3 2 1 5 5 C 1.52997 * 109.47315 * 64.99596 * 3 2 1 6 6 C 1.53001 * 109.47415 * 185.00039 * 3 2 1 7 7 C 1.53003 * 109.47437 * 174.99888 * 6 3 2 8 8 N 1.46496 * 109.47208 * 179.97438 * 7 6 3 9 9 C 1.34773 * 119.99950 * 179.97438 * 8 7 6 10 10 O 1.21592 * 120.00358 * 0.02562 * 9 8 7 11 11 C 1.47536 * 120.00250 * 180.02562 * 9 8 7 12 12 C 1.39673 * 120.19308 * 0.27711 * 11 9 8 13 13 C 1.37829 * 119.91662 * 180.30027 * 12 11 9 14 14 C 1.38573 * 120.32162 * 359.69830 * 13 12 11 15 15 C 1.38023 * 120.40656 * 0.02562 * 14 13 12 16 16 C 1.38834 * 120.06654 * 0.02562 * 15 14 13 17 17 O 1.35526 * 120.15695 * 179.97438 * 16 15 14 18 18 C 1.34813 * 117.00333 * 5.59555 * 17 16 15 19 19 H 1.08003 * 119.99735 * 354.93364 * 18 17 16 20 20 C 1.38696 * 119.99881 * 174.93689 * 18 17 16 21 21 N 1.31516 * 120.00523 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99750 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47507 * 59.99568 * 22 20 18 24 24 H 1.48492 * 109.47109 * 179.97438 * 22 20 18 25 25 H 1.48509 * 109.46909 * 299.99839 * 22 20 18 26 26 H 1.08999 * 109.47336 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46989 * 300.00824 * 1 2 3 28 28 H 1.09008 * 109.46423 * 60.00371 * 1 2 3 29 29 H 1.09002 * 109.47651 * 239.99377 * 2 1 3 30 30 H 1.09010 * 109.47162 * 119.99570 * 2 1 3 31 31 H 1.08997 * 109.46945 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47294 * 300.00128 * 5 3 2 33 33 H 1.08999 * 109.47438 * 60.00377 * 5 3 2 34 34 H 1.08998 * 109.47254 * 54.99286 * 6 3 2 35 35 H 1.09006 * 109.46895 * 294.99625 * 6 3 2 36 36 H 1.08997 * 109.46877 * 59.99386 * 7 6 3 37 37 H 1.09006 * 109.46863 * 299.99756 * 7 6 3 38 38 H 0.96999 * 120.00188 * 0.02562 * 8 7 6 39 39 H 1.07997 * 120.04439 * 0.02562 * 12 11 9 40 40 H 1.07997 * 119.83927 * 179.72258 * 13 12 11 41 41 H 1.08006 * 119.79576 * 180.02562 * 14 13 12 42 42 H 1.07998 * 119.96858 * 180.02562 * 15 14 13 43 43 H 0.97001 * 120.00147 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4443 -0.1257 7 6 4.0646 2.8849 -0.2512 8 7 5.5247 2.8866 -0.3709 9 6 6.1893 4.0526 -0.4943 10 8 5.5772 5.1031 -0.5057 11 6 7.6597 4.0544 -0.6155 12 6 8.3665 2.8497 -0.6086 13 6 9.7406 2.8583 -0.7160 14 6 10.4253 4.0570 -0.8371 15 6 9.7398 5.2548 -0.8511 16 6 8.3557 5.2654 -0.7430 17 8 7.6808 6.4406 -0.7559 18 6 8.3992 7.5565 -0.9927 19 1 9.4741 7.4983 -1.0798 20 6 7.7578 8.7792 -1.1243 21 7 6.4488 8.8500 -1.0186 22 14 8.7533 10.3254 -1.4531 23 1 9.4990 10.1723 -2.7281 24 1 7.8388 11.4911 -1.5520 25 1 9.7134 10.5417 -0.3410 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.9983 3.1543 1.3070 32 1 0.5490 2.1253 1.3968 33 1 2.0698 1.5876 2.1492 34 1 3.8571 0.8799 -1.0112 35 1 4.0030 0.9835 0.7597 36 1 3.7723 3.4492 0.6344 37 1 3.6265 3.3456 -1.1366 38 1 6.0130 2.0486 -0.3622 39 1 7.8375 1.9129 -0.5149 40 1 10.2862 1.9264 -0.7061 41 1 11.5021 4.0538 -0.9211 42 1 10.2806 6.1848 -0.9462 43 1 6.0003 9.7051 -1.1111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855387009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:33 Heat of formation + Delta-G solvation = -81.630546 kcal Electronic energy + Delta-G solvation = -22759.824717 eV Core-core repulsion = 19383.128990 eV Total energy + Delta-G solvation = -3376.695727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27859 -39.89116 -38.28970 -37.99461 -35.56892 -34.32564 -32.65568 -31.37186 -30.56417 -28.88958 -27.38262 -26.24058 -24.49148 -23.26288 -22.56196 -21.61853 -20.68499 -19.84644 -19.18310 -17.81985 -17.11933 -16.67674 -16.35551 -16.03168 -15.95201 -15.77257 -15.48460 -15.31117 -15.04038 -14.57171 -14.39717 -14.26961 -14.06156 -13.56861 -13.54765 -12.99822 -12.82877 -12.77610 -12.68101 -12.53657 -12.49715 -12.34959 -12.14990 -11.96595 -11.60191 -11.42500 -11.38387 -11.33377 -10.82585 -10.59376 -10.08870 -9.76766 -9.03356 -8.44478 -6.15816 0.12906 0.73269 1.31767 1.45042 1.49963 2.10378 2.15995 2.30316 2.87907 3.22967 3.47372 3.77333 3.91330 3.94660 4.06008 4.09646 4.26776 4.30101 4.39084 4.52216 4.57559 4.57966 4.66020 4.70068 4.75915 4.88688 4.96339 5.03505 5.07672 5.09060 5.14141 5.17340 5.21640 5.25323 5.30371 5.48784 5.52972 5.55837 5.60270 5.61821 5.70001 5.96099 6.17782 6.72485 6.94521 7.50047 7.80748 8.75979 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.003579 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.019361 B = 7822.490890 C = 9349.928878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.089 4.089 4 H 0.063 0.937 5 C -0.154 4.154 6 C -0.111 4.111 7 C 0.120 3.880 8 N -0.717 5.717 9 C 0.544 3.456 10 O -0.572 6.572 11 C -0.246 4.246 12 C -0.029 4.029 13 C -0.200 4.200 14 C -0.040 4.040 15 C -0.258 4.258 16 C 0.147 3.853 17 O -0.189 6.189 18 C -0.429 4.429 19 H 0.107 0.893 20 C -0.023 4.023 21 N -0.906 5.906 22 Si 1.023 2.977 23 H -0.254 1.254 24 H -0.273 1.273 25 H -0.253 1.253 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.412 0.588 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.123 0.877 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.701 -20.121 1.795 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.108 4.108 4 H 0.082 0.918 5 C -0.211 4.211 6 C -0.148 4.148 7 C -0.003 4.003 8 N -0.373 5.373 9 C 0.334 3.666 10 O -0.452 6.452 11 C -0.251 4.251 12 C -0.048 4.048 13 C -0.219 4.219 14 C -0.058 4.058 15 C -0.278 4.278 16 C 0.092 3.908 17 O -0.092 6.092 18 C -0.505 4.505 19 H 0.124 0.876 20 C -0.222 4.222 21 N -0.542 5.542 22 Si 0.841 3.159 23 H -0.178 1.178 24 H -0.198 1.198 25 H -0.177 1.177 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.250 0.750 39 H 0.179 0.821 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.141 0.859 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.597 -19.157 1.821 19.417 hybrid contribution 0.218 1.112 -0.137 1.141 sum -2.379 -18.044 1.684 18.278 Atomic orbital electron populations 1.21838 0.95710 1.01964 1.01797 1.21521 0.96071 0.94759 1.02670 1.21098 0.93977 0.97469 0.98278 0.91841 1.21965 1.01814 0.99849 0.97474 1.21787 0.96129 0.92990 1.03937 1.21393 0.79358 0.99284 1.00290 1.45661 1.07728 1.07986 1.75904 1.18609 0.88032 0.83807 0.76157 1.90925 1.70222 1.33244 1.50758 1.19324 0.92266 0.92934 1.20544 1.21321 0.95064 0.94943 0.93442 1.21189 0.93571 0.98869 1.08233 1.21443 1.00897 0.91045 0.92449 1.21304 0.92594 1.00689 1.13172 1.20118 0.92172 0.86927 0.91590 1.84183 1.36560 1.12222 1.76242 1.22014 0.92572 0.84223 1.51692 0.87571 1.26780 0.97202 1.02428 0.95786 1.70322 1.10154 1.27152 1.46562 0.84619 0.77186 0.74185 0.79935 1.17798 1.19795 1.17730 0.91966 0.92573 0.93175 0.91286 0.91178 0.94367 0.91723 0.91889 0.89672 0.89711 0.93515 0.94119 0.74965 0.82089 0.81709 0.82804 0.85909 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.67 71.98 0.70 -1.31 16 2 C -0.11 -1.50 5.40 30.59 0.17 -1.33 16 3 C -0.09 -1.56 2.39 -10.80 -0.03 -1.59 16 4 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.15 -2.92 8.70 71.98 0.63 -2.29 16 6 C -0.11 -2.04 4.80 30.60 0.15 -1.90 16 7 C 0.12 3.59 5.43 86.38 0.47 4.06 16 8 N -0.72 -23.24 5.51 -466.27 -2.57 -25.81 16 9 C 0.54 25.44 7.76 86.70 0.67 26.11 16 10 O -0.57 -34.86 15.17 16.89 0.26 -34.60 16 11 C -0.25 -10.88 5.89 -19.99 -0.12 -11.00 16 12 C -0.03 -0.89 9.54 22.52 0.21 -0.67 16 13 C -0.20 -5.34 10.03 22.25 0.22 -5.11 16 14 C -0.04 -1.26 10.03 22.30 0.22 -1.03 16 15 C -0.26 -11.18 9.16 22.36 0.20 -10.98 16 16 C 0.15 7.73 6.66 22.90 0.15 7.88 16 17 O -0.19 -12.30 7.84 0.78 0.01 -12.29 16 18 C -0.43 -26.38 9.49 67.93 0.64 -25.74 16 19 H 0.11 5.83 5.21 -2.91 -0.02 5.82 16 20 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 21 N -0.91 -60.18 13.67 21.62 0.30 -59.88 16 22 Si 1.02 44.76 29.55 68.60 2.03 46.79 16 23 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.73 6.56 -2.39 -0.02 0.72 16 28 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.04 0.90 6.57 -2.39 -0.02 0.88 16 32 H 0.06 1.10 6.56 -2.39 -0.02 1.08 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.32 8.14 -2.38 -0.02 1.31 16 36 H 0.05 1.58 6.57 -2.39 -0.02 1.57 16 37 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.41 9.42 6.50 -92.71 -0.60 8.82 16 39 H 0.16 3.21 6.40 -2.91 -0.02 3.19 16 40 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 41 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 42 H 0.12 5.38 5.64 -2.91 -0.02 5.37 16 43 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -88.22 351.20 5.19 -83.03 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.41 Total: 28.58 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 4.76 Total: -25.82 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.27 Total: -85.69 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: 0.26 Total: -46.90 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -88.22 5.19 -83.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855387009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.401 kcal (2) G-P(sol) polarization free energy of solvation -88.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds