Wall clock time and date at job start Tue Mar 31 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46999 * 2 1 4 4 C 1.50700 * 109.47105 * 240.00076 * 2 1 3 5 5 H 1.08007 * 119.99626 * 239.99922 * 4 2 1 6 6 C 1.37880 * 120.00125 * 59.99941 * 4 2 1 7 7 N 1.31505 * 119.99864 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99622 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47255 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47130 * 120.00025 * 8 6 4 11 11 H 1.48502 * 109.46606 * 239.99928 * 8 6 4 12 12 C 1.52997 * 109.46983 * 119.99658 * 2 1 3 13 13 N 1.46495 * 109.47171 * 300.00195 * 12 2 1 14 14 C 1.34777 * 119.99891 * 180.02562 * 13 12 2 15 15 O 1.21513 * 120.00290 * 359.97438 * 14 13 12 16 16 O 1.34641 * 120.00112 * 180.02562 * 14 13 12 17 17 C 1.45196 * 117.00069 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47145 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 1.09002 * 109.47066 * 300.00283 * 1 2 3 26 26 H 1.09008 * 109.47061 * 60.00258 * 1 2 3 27 27 H 1.08997 * 109.47318 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46868 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47003 * 299.99777 * 3 2 1 30 30 H 1.09002 * 109.46989 * 59.99665 * 3 2 1 31 31 H 0.97003 * 120.00125 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46836 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47163 * 60.00057 * 12 2 1 34 34 H 0.96997 * 120.00007 * 359.97438 * 13 12 2 35 35 H 1.08995 * 109.47505 * 59.99605 * 17 16 14 36 36 H 1.09004 * 109.47089 * 299.99658 * 17 16 14 37 37 H 1.09005 * 109.47610 * 60.00110 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99451 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4453 14 6 1.8776 -0.4907 3.6695 15 8 2.5763 -1.4786 3.7811 16 8 1.4284 0.1437 4.7688 17 6 1.8185 -0.4079 6.0540 18 6 1.2184 0.4407 7.1766 19 6 1.6229 -0.1322 8.5106 20 6 2.7860 0.2959 9.1227 21 6 3.1567 -0.2292 10.3465 22 6 2.3639 -1.1821 10.9585 23 6 1.2036 -1.6141 10.3439 24 6 0.8305 -1.0856 9.1222 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 0.7082 1.1608 -3.4844 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -1.7488 1.2493 34 1 0.9943 0.7583 2.3563 35 1 2.9053 -0.4032 6.1366 36 1 1.4524 -1.4313 6.1363 37 1 0.1315 0.4363 7.0943 38 1 1.5849 1.4640 7.0942 39 1 3.4052 1.0407 8.6447 40 1 4.0657 0.1049 10.8245 41 1 2.6534 -1.5920 11.9148 42 1 0.5864 -2.3617 10.8199 43 1 -0.0787 -1.4195 8.6444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859185152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:08 Heat of formation + Delta-G solvation = -74.184883 kcal Electronic energy + Delta-G solvation = -22315.965357 eV Core-core repulsion = 18939.592499 eV Total energy + Delta-G solvation = -3376.372859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.12344 -39.48745 -37.19847 -35.82983 -33.78727 -33.30150 -31.17706 -30.89108 -29.01269 -25.76013 -25.73118 -25.07254 -23.74708 -22.86671 -21.17351 -21.01966 -18.95534 -18.32032 -16.98126 -16.50713 -16.43081 -15.76459 -15.39179 -15.38226 -14.79231 -14.12226 -14.09338 -13.81066 -13.66240 -13.28276 -13.01756 -12.98116 -12.71359 -12.22580 -11.91596 -11.73105 -11.41196 -11.37273 -11.24025 -11.20656 -10.89390 -10.67378 -10.42955 -10.35005 -10.28363 -10.10879 -9.65781 -9.38632 -9.20541 -9.02592 -8.80702 -8.54021 -8.36708 -6.03733 -4.14000 1.01667 1.11598 2.56277 3.26671 3.26806 3.35438 3.40123 3.50191 4.35745 4.45141 4.53294 4.69771 4.79446 4.85949 4.88720 5.07820 5.22535 5.23242 5.26179 5.30562 5.59742 5.65032 5.78798 5.80461 6.13083 6.17555 6.22713 6.27287 6.33634 6.45705 6.56773 6.70991 6.76735 6.83422 6.90662 6.99048 7.00338 7.33578 7.54349 7.68157 7.98044 7.99448 8.12733 8.36057 8.79406 8.87530 9.51883 10.97803 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.046491 B = 0.002342 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.127022 B =11954.707232 C =12065.822263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.148 3.852 13 N -0.694 5.694 14 C 0.639 3.361 15 O -0.583 6.583 16 O -0.378 6.378 17 C 0.095 3.905 18 C -0.081 4.081 19 C -0.081 4.081 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.008 0.992 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.008 0.992 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.405 0.595 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 0.619 22.692 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.353 5.353 14 C 0.391 3.609 15 O -0.473 6.473 16 O -0.292 6.292 17 C 0.019 3.981 18 C -0.118 4.118 19 C -0.082 4.082 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.130 4.130 25 H 0.027 0.973 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.167 0.233 22.647 22.649 hybrid contribution 0.158 -0.221 -0.804 0.848 sum -0.009 0.013 21.843 21.843 Atomic orbital electron populations 1.21848 0.97583 0.99313 1.00276 1.18401 0.93003 0.92908 0.90192 1.21848 0.98665 0.98232 1.00275 1.20990 1.31546 1.12148 0.89712 0.92274 1.24883 0.94850 0.94933 0.98889 1.69812 1.36586 1.22754 1.23183 0.86494 0.78627 0.79734 0.82904 1.19741 1.21052 1.21058 1.21818 0.98266 0.95651 0.81615 1.45195 1.54496 1.33041 1.02559 1.18265 0.79339 0.81655 0.81647 1.90959 1.42173 1.27635 1.86520 1.86186 1.71984 1.56412 1.14648 1.22786 1.00027 0.97124 0.78129 1.20528 1.02261 0.99764 0.89274 1.19668 0.95420 0.97369 0.95700 1.21133 0.96174 1.00197 0.95533 1.21164 0.99744 0.97283 0.95560 1.21184 0.95197 0.97668 1.00047 1.21165 0.97077 0.99935 0.95572 1.21132 0.99859 0.96481 0.95565 0.97312 0.89486 0.95334 0.95332 0.89488 0.97312 0.93010 0.92392 0.92394 0.75957 0.91253 0.91247 0.89671 0.89667 0.85789 0.85972 0.86128 0.85970 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.42 9.35 55.43 0.52 -22.90 16 8 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.15 3.15 4.50 -4.05 -0.02 3.13 16 13 N -0.69 -13.04 4.96 -65.28 -0.32 -13.37 16 14 C 0.64 12.07 8.75 54.06 0.47 12.55 16 15 O -0.58 -12.65 16.13 -19.28 -0.31 -12.96 16 16 O -0.38 -5.94 10.27 -40.33 -0.41 -6.35 16 17 C 0.09 1.21 5.46 37.15 0.20 1.41 16 18 C -0.08 -0.78 5.72 -27.88 -0.16 -0.94 16 19 C -0.08 -0.77 5.13 -104.62 -0.54 -1.30 16 20 C -0.11 -1.00 9.70 -39.58 -0.38 -1.38 16 21 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 22 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 23 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 24 C -0.11 -1.00 9.70 -39.58 -0.38 -1.38 16 25 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 26 H 0.09 2.16 6.07 -51.92 -0.32 1.84 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.16 6.07 -51.92 -0.32 1.84 16 30 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 31 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.40 7.00 6.27 -40.82 -0.26 6.75 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -28.88 354.00 -8.69 -37.57 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.63 Total: 5.02 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.85 Total: -7.91 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.19 Total: -36.27 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.73 Total: -19.31 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.88 -8.69 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859185152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.612 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds