Wall clock time and date at job start Tue Mar 31 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46999 * 2 1 4 4 C 1.50700 * 109.47105 * 240.00076 * 2 1 3 5 5 H 1.08007 * 119.99626 * 239.99922 * 4 2 1 6 6 C 1.37880 * 120.00125 * 59.99941 * 4 2 1 7 7 N 1.31505 * 119.99864 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99622 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47255 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47130 * 120.00025 * 8 6 4 11 11 H 1.48502 * 109.46606 * 239.99928 * 8 6 4 12 12 C 1.52997 * 109.46983 * 119.99658 * 2 1 3 13 13 N 1.46495 * 109.47171 * 300.00195 * 12 2 1 14 14 C 1.34777 * 119.99891 * 180.02562 * 13 12 2 15 15 O 1.21513 * 120.00290 * 359.97438 * 14 13 12 16 16 O 1.34641 * 120.00112 * 180.02562 * 14 13 12 17 17 C 1.45196 * 117.00069 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47145 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 1.09002 * 109.47066 * 300.00283 * 1 2 3 26 26 H 1.09008 * 109.47061 * 60.00258 * 1 2 3 27 27 H 1.08997 * 109.47318 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46868 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47003 * 299.99777 * 3 2 1 30 30 H 1.09002 * 109.46989 * 59.99665 * 3 2 1 31 31 H 0.97003 * 120.00125 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46836 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47163 * 60.00057 * 12 2 1 34 34 H 0.96997 * 120.00007 * 359.97438 * 13 12 2 35 35 H 1.08995 * 109.47505 * 59.99605 * 17 16 14 36 36 H 1.09004 * 109.47089 * 299.99658 * 17 16 14 37 37 H 1.09005 * 109.47610 * 60.00110 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99451 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4453 14 6 1.8776 -0.4907 3.6695 15 8 2.5763 -1.4786 3.7811 16 8 1.4284 0.1437 4.7688 17 6 1.8185 -0.4079 6.0540 18 6 1.2184 0.4407 7.1766 19 6 1.6229 -0.1322 8.5106 20 6 2.7860 0.2959 9.1227 21 6 3.1567 -0.2292 10.3465 22 6 2.3639 -1.1821 10.9585 23 6 1.2036 -1.6141 10.3439 24 6 0.8305 -1.0856 9.1222 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 0.7082 1.1608 -3.4844 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -1.7488 1.2493 34 1 0.9943 0.7583 2.3563 35 1 2.9053 -0.4032 6.1366 36 1 1.4524 -1.4313 6.1363 37 1 0.1315 0.4363 7.0943 38 1 1.5849 1.4640 7.0942 39 1 3.4052 1.0407 8.6447 40 1 4.0657 0.1049 10.8245 41 1 2.6534 -1.5920 11.9148 42 1 0.5864 -2.3617 10.8199 43 1 -0.0787 -1.4195 8.6444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859185152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:08 Heat of formation + Delta-G solvation = -88.818792 kcal Electronic energy + Delta-G solvation = -22316.599931 eV Core-core repulsion = 18939.592499 eV Total energy + Delta-G solvation = -3377.007432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53014 -40.18292 -38.77673 -37.37196 -35.17625 -34.48957 -32.72956 -31.77717 -29.86490 -27.55829 -27.52004 -26.86862 -24.75158 -23.47512 -22.50516 -21.87052 -20.69012 -19.87746 -17.97411 -17.77398 -17.59153 -17.58061 -16.67332 -16.23937 -16.03409 -15.60774 -15.34992 -15.18072 -14.66227 -14.50757 -14.21791 -14.07077 -13.95326 -13.63105 -13.25583 -13.10358 -12.88779 -12.68189 -12.66342 -12.56153 -12.25540 -12.13481 -12.01850 -11.91995 -11.72953 -11.51917 -11.49294 -11.23409 -10.70441 -10.40361 -10.09830 -9.82215 -9.67601 -8.01614 -6.17332 0.35858 0.49955 1.21655 1.43258 1.47869 1.57129 1.75106 2.46916 2.84345 3.22455 3.29378 3.82463 3.89856 4.09149 4.11862 4.17546 4.30187 4.31073 4.38980 4.48085 4.56202 4.63415 4.68780 4.81083 4.87399 4.96240 5.06467 5.09894 5.13082 5.17583 5.19832 5.23270 5.41102 5.53507 5.57088 5.62860 5.67234 5.68212 5.68865 6.11406 6.14353 6.20582 6.42751 6.48541 6.86832 7.32141 7.50394 8.97781 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.046491 B = 0.002342 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.127022 B =11954.707232 C =12065.822263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.051 3.949 3 C -0.123 4.123 4 C -0.525 4.525 5 H 0.048 0.952 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.163 3.837 13 N -0.688 5.688 14 C 0.643 3.357 15 O -0.613 6.613 16 O -0.369 6.369 17 C 0.091 3.909 18 C -0.069 4.069 19 C -0.097 4.097 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.125 4.125 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.260 0.740 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.414 0.586 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 0.836 24.165 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 C -0.181 4.181 4 C -0.564 4.564 5 H 0.067 0.933 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.041 3.959 13 N -0.347 5.347 14 C 0.396 3.604 15 O -0.505 6.505 16 O -0.283 6.283 17 C 0.016 3.984 18 C -0.106 4.106 19 C -0.097 4.097 20 C -0.143 4.143 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.143 4.143 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.251 0.749 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.338 0.475 24.143 24.150 hybrid contribution 0.213 -0.299 -1.151 1.208 sum -0.124 0.176 22.992 22.993 Atomic orbital electron populations 1.21701 0.97028 0.98918 1.00460 1.18398 0.93405 0.93152 0.90013 1.21701 0.98160 0.97786 1.00459 1.21257 1.31716 1.12209 0.91228 0.93343 1.25465 0.95160 0.95610 1.01038 1.69915 1.36953 1.23334 1.23589 0.85673 0.78070 0.78711 0.80136 1.19875 1.20821 1.20829 1.21417 0.97450 0.95053 0.81977 1.44935 1.54553 1.33129 1.02109 1.18275 0.78760 0.81198 0.82210 1.90942 1.43496 1.29040 1.87054 1.86207 1.71401 1.55864 1.14783 1.23071 1.00124 0.97729 0.77454 1.20458 1.02541 0.99490 0.88124 1.19712 0.96119 0.98198 0.95684 1.21355 0.96232 1.00628 0.96110 1.21465 1.00510 0.97240 0.95391 1.21527 0.94904 0.97295 1.00835 1.21466 0.97514 1.00223 0.95403 1.21354 1.00286 0.96545 0.96140 0.94575 0.91743 0.95969 0.95967 0.91746 0.94573 0.93014 0.93474 0.93476 0.74879 0.91718 0.91714 0.88846 0.88840 0.85007 0.84168 0.84026 0.84167 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 4 C -0.53 -27.35 8.01 25.60 0.21 -27.15 16 5 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 6 C 0.03 1.41 5.15 84.66 0.44 1.85 16 7 N -0.90 -47.55 9.35 21.45 0.20 -47.35 16 8 Si 0.95 42.21 29.54 68.60 2.03 44.24 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.16 6.90 4.50 86.38 0.39 7.29 16 13 N -0.69 -24.94 4.96 -590.86 -2.93 -27.87 16 14 C 0.64 23.63 8.75 129.79 1.14 24.76 16 15 O -0.61 -26.37 16.13 19.80 0.32 -26.05 16 16 O -0.37 -11.06 10.27 -55.51 -0.57 -11.63 16 17 C 0.09 2.23 5.46 71.98 0.39 2.63 16 18 C -0.07 -1.23 5.72 29.85 0.17 -1.06 16 19 C -0.10 -1.71 5.13 -19.86 -0.10 -1.82 16 20 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 21 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 22 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 23 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 24 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 25 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 26 H 0.06 3.17 6.07 -2.38 -0.01 3.15 16 27 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 3.17 6.07 -2.38 -0.01 3.15 16 30 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 31 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.41 13.42 6.27 -92.71 -0.58 12.84 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.09 1.51 8.09 -2.38 -0.02 1.49 16 38 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 39 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 42 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -60.53 354.00 4.32 -56.21 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.41 Total: 21.86 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.87 Total: -9.40 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -2.73 Total: -75.23 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.25 Total: -37.68 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -60.53 4.32 -56.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859185152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.608 kcal (2) G-P(sol) polarization free energy of solvation -60.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds