Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.53008 * 109.47186 * 120.00259 * 2 1 3 5 5 N 1.46498 * 109.47096 * 65.00020 * 4 2 1 6 6 C 1.46506 * 119.99762 * 269.99788 * 5 4 2 7 7 C 1.50691 * 109.47301 * 270.00131 * 6 5 4 8 8 H 1.08001 * 120.00369 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00114 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00438 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00109 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47309 * 89.99720 * 11 9 7 13 13 H 1.48494 * 109.47686 * 210.00193 * 11 9 7 14 14 H 1.48506 * 109.47223 * 329.99836 * 11 9 7 15 15 C 1.34769 * 120.00090 * 90.00245 * 5 4 2 16 16 O 1.21282 * 120.00284 * 179.97438 * 15 5 4 17 17 C 1.50698 * 120.00356 * 359.97438 * 15 5 4 18 18 H 1.08996 * 115.54730 * 34.32587 * 17 15 5 19 19 C 1.53070 * 117.49475 * 248.60450 * 17 15 5 20 20 C 1.52995 * 59.98465 * 252.50818 * 19 17 15 21 21 H 1.09007 * 117.49853 * 107.49999 * 20 19 17 22 22 C 1.50703 * 117.50149 * 252.49837 * 20 19 17 23 23 C 1.34507 * 125.78834 * 188.45882 * 22 20 19 24 24 C 1.41386 * 106.84010 * 180.26118 * 23 22 20 25 25 C 1.34511 * 106.84141 * 0.02562 * 24 23 22 26 26 O 1.34304 * 125.78797 * 8.77061 * 22 20 19 27 27 H 1.09004 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46968 * 299.99905 * 1 2 3 29 29 H 1.09004 * 109.47027 * 60.00220 * 1 2 3 30 30 H 1.09010 * 109.47286 * 239.99816 * 2 1 3 31 31 H 1.09005 * 109.47045 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46565 * 300.00015 * 3 2 1 33 33 H 1.08999 * 109.46595 * 60.00165 * 3 2 1 34 34 H 1.08997 * 109.46873 * 304.99908 * 4 2 1 35 35 H 1.08999 * 109.47050 * 184.99842 * 4 2 1 36 36 H 1.08998 * 109.46673 * 30.00800 * 6 5 4 37 37 H 1.09004 * 109.46972 * 149.99998 * 6 5 4 38 38 H 0.96992 * 120.00330 * 180.02562 * 10 9 7 39 39 H 1.09004 * 117.51592 * 145.03514 * 19 17 15 40 40 H 1.08996 * 117.49770 * 359.97438 * 19 17 15 41 41 H 1.08004 * 126.58507 * 0.26980 * 23 22 20 42 42 H 1.08000 * 126.57862 * 179.97438 * 24 23 22 43 43 H 1.08000 * 125.79478 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 -2.1329 1.1905 6 6 0.3746 -2.5660 1.7613 7 6 0.5716 -2.9409 3.2074 8 1 1.5507 -2.8639 3.6568 9 6 -0.4980 -3.3823 3.9571 10 7 -0.3262 -3.7090 5.2194 11 14 -2.1914 -3.5162 3.1800 12 1 -2.3618 -4.8703 2.5948 13 1 -3.2309 -3.2903 4.2160 14 1 -2.3277 -2.4943 2.1111 15 6 2.4715 -3.0330 0.6116 16 8 2.1509 -4.2017 0.5633 17 6 3.7858 -2.5875 0.0240 18 1 4.2829 -1.7718 0.5489 19 6 3.9347 -2.6441 -1.4984 20 6 4.6709 -3.6570 -0.6192 21 1 4.3028 -4.6830 -0.6170 22 6 6.1633 -3.5016 -0.4790 23 6 6.9933 -4.3788 0.1136 24 6 8.2953 -3.8349 0.0249 25 6 8.1830 -2.6576 -0.6160 26 8 6.8895 -2.4611 -0.9192 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9562 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 -0.3484 -1.7532 1.6918 37 1 0.0042 -3.4298 1.2092 38 1 -1.0786 -4.0199 5.7467 39 1 4.5299 -1.8655 -1.9754 40 1 3.0822 -3.0040 -2.0744 41 1 6.7180 -5.3184 0.5695 42 1 9.2053 -4.2790 0.4005 43 1 8.9953 -1.9845 -0.8477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865027305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = 0.890167 kcal Electronic energy + Delta-G solvation = -23612.535543 eV Core-core repulsion = 20239.418183 eV Total energy + Delta-G solvation = -3373.117360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.60884 -39.66315 -36.96074 -35.97414 -33.57208 -33.01404 -32.28103 -29.64064 -28.56778 -26.94321 -25.65810 -24.33538 -23.16915 -21.74253 -21.57037 -20.31788 -20.03786 -18.26617 -17.63361 -16.95441 -16.59054 -16.04030 -15.71514 -14.89171 -14.60382 -14.49814 -14.21630 -13.58791 -13.51522 -12.97982 -12.81828 -12.78195 -12.60443 -12.41140 -12.17533 -12.13579 -11.88871 -11.79327 -11.50047 -11.19907 -10.98164 -10.85172 -10.66273 -10.60361 -10.36775 -10.29271 -10.07995 -9.91682 -9.51928 -9.07347 -8.57515 -8.35149 -7.69506 -6.07679 -4.06118 1.62791 2.54439 2.88957 3.11366 3.28924 3.34713 3.36645 3.73839 4.01548 4.39856 4.50238 4.75050 4.83163 4.92596 5.02319 5.05550 5.12727 5.20727 5.25036 5.31502 5.35816 5.61452 5.68595 5.76461 5.79381 5.83235 5.89340 5.94115 6.03657 6.07095 6.08015 6.10982 6.15820 6.23905 6.46313 6.47776 6.55384 6.75455 6.94001 7.11116 7.35121 7.62554 8.24538 8.47832 8.92688 8.98682 9.52528 11.05836 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.004601 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.992922 B = 6083.680240 C = 7156.780312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.583 5.583 6 C 0.213 3.787 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.898 5.898 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.538 3.462 16 O -0.540 6.540 17 C -0.166 4.166 18 H 0.124 0.876 19 C -0.140 4.140 20 C -0.055 4.055 21 H 0.147 0.853 22 C 0.025 3.975 23 C -0.204 4.204 24 C -0.211 4.211 25 C -0.049 4.049 26 O -0.176 6.176 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.110 7.845 -14.067 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.312 5.312 6 C 0.093 3.907 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.324 3.676 16 O -0.418 6.418 17 C -0.187 4.187 18 H 0.141 0.859 19 C -0.177 4.177 20 C -0.074 4.074 21 H 0.165 0.835 22 C -0.025 4.025 23 C -0.223 4.223 24 C -0.230 4.230 25 C -0.117 4.117 26 O -0.073 6.073 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.167 0.833 42 H 0.165 0.835 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 11.676 7.408 -14.044 19.709 hybrid contribution -0.601 -0.192 0.102 0.640 sum 11.075 7.216 -13.943 19.212 Atomic orbital electron populations 1.21948 0.95030 1.02620 1.01145 1.21580 0.96699 0.95984 0.99028 1.21770 1.00692 0.95870 1.01759 1.21602 0.99490 0.81778 0.98022 1.47767 1.20891 1.06625 1.55930 1.19789 0.80527 0.95770 0.94629 1.21345 0.97456 1.44486 0.93368 0.90781 1.24845 0.98810 0.94611 0.94690 1.69896 1.31615 1.44767 1.07340 0.86884 0.84376 0.79322 0.79326 1.19928 1.21076 1.18996 1.19245 0.84096 0.85696 0.78542 1.90667 1.74883 1.17346 1.58882 1.22509 0.97049 1.02002 0.97139 0.85859 1.23033 1.02421 1.01103 0.91180 1.20513 0.83446 0.98366 1.05050 0.83520 1.21438 0.92539 0.87455 1.01021 1.21581 0.92434 1.02475 1.05809 1.21834 0.98670 0.97079 1.05435 1.23960 0.83900 0.99857 1.03944 1.83963 1.18460 1.41351 1.63523 0.91757 0.92480 0.93424 0.91196 0.92811 0.92820 0.92489 0.89780 0.91302 0.94471 0.94750 0.92590 0.87524 0.87471 0.83260 0.83513 0.78222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.18 37.16 0.30 -1.80 16 2 C -0.11 -1.47 3.13 -90.62 -0.28 -1.76 16 3 C -0.14 -1.48 9.19 37.16 0.34 -1.14 16 4 C 0.12 1.82 4.73 -4.04 -0.02 1.80 16 5 N -0.58 -11.80 2.28 -175.06 -0.40 -12.20 16 6 C 0.21 5.13 3.30 -5.19 -0.02 5.12 16 7 C -0.53 -15.16 9.94 -34.45 -0.34 -15.50 16 8 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 11 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 15 C 0.54 10.89 7.46 -10.99 -0.08 10.81 16 16 O -0.54 -13.11 15.84 5.56 0.09 -13.02 16 17 C -0.17 -2.53 5.00 -91.74 -0.46 -2.99 16 18 H 0.12 1.75 6.44 -51.93 -0.33 1.41 16 19 C -0.14 -1.73 9.87 -26.70 -0.26 -2.00 16 20 C -0.06 -0.79 5.75 -91.77 -0.53 -1.31 16 21 H 0.15 2.21 7.67 -51.92 -0.40 1.81 16 22 C 0.03 0.35 6.80 -35.63 -0.24 0.10 16 23 C -0.20 -2.66 10.81 -39.70 -0.43 -3.09 16 24 C -0.21 -2.31 10.91 -39.70 -0.43 -2.75 16 25 C -0.05 -0.50 12.09 29.41 0.36 -0.14 16 26 O -0.18 -2.22 10.36 5.70 0.06 -2.16 16 27 H 0.06 1.05 5.89 -51.93 -0.31 0.75 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 35 H 0.07 0.96 6.00 -51.93 -0.31 0.65 16 36 H 0.04 0.85 5.04 -51.93 -0.26 0.59 16 37 H 0.03 0.89 6.85 -51.93 -0.36 0.54 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.11 1.13 7.96 -51.93 -0.41 0.72 16 40 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.20 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -33.91 354.73 -7.61 -41.52 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.62 Total: 3.29 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.19 Total: -12.63 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.37 Total: -39.20 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.15 Total: -15.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.91 -7.61 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.414 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds