Wall clock time and date at job start Tue Mar 31 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.53008 * 109.47186 * 120.00259 * 2 1 3 5 5 N 1.46498 * 109.47096 * 65.00020 * 4 2 1 6 6 C 1.46506 * 119.99762 * 269.99788 * 5 4 2 7 7 C 1.50691 * 109.47301 * 270.00131 * 6 5 4 8 8 H 1.08001 * 120.00369 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00114 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00438 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00109 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47309 * 89.99720 * 11 9 7 13 13 H 1.48494 * 109.47686 * 210.00193 * 11 9 7 14 14 H 1.48506 * 109.47223 * 329.99836 * 11 9 7 15 15 C 1.34769 * 120.00090 * 90.00245 * 5 4 2 16 16 O 1.21282 * 120.00284 * 179.97438 * 15 5 4 17 17 C 1.50698 * 120.00356 * 359.97438 * 15 5 4 18 18 H 1.08996 * 115.54730 * 34.32587 * 17 15 5 19 19 C 1.53070 * 117.49475 * 248.60450 * 17 15 5 20 20 C 1.52995 * 59.98465 * 252.50818 * 19 17 15 21 21 H 1.09007 * 117.49853 * 107.49999 * 20 19 17 22 22 C 1.50703 * 117.50149 * 252.49837 * 20 19 17 23 23 C 1.34507 * 125.78834 * 188.45882 * 22 20 19 24 24 C 1.41386 * 106.84010 * 180.26118 * 23 22 20 25 25 C 1.34511 * 106.84141 * 0.02562 * 24 23 22 26 26 O 1.34304 * 125.78797 * 8.77061 * 22 20 19 27 27 H 1.09004 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46968 * 299.99905 * 1 2 3 29 29 H 1.09004 * 109.47027 * 60.00220 * 1 2 3 30 30 H 1.09010 * 109.47286 * 239.99816 * 2 1 3 31 31 H 1.09005 * 109.47045 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46565 * 300.00015 * 3 2 1 33 33 H 1.08999 * 109.46595 * 60.00165 * 3 2 1 34 34 H 1.08997 * 109.46873 * 304.99908 * 4 2 1 35 35 H 1.08999 * 109.47050 * 184.99842 * 4 2 1 36 36 H 1.08998 * 109.46673 * 30.00800 * 6 5 4 37 37 H 1.09004 * 109.46972 * 149.99998 * 6 5 4 38 38 H 0.96992 * 120.00330 * 180.02562 * 10 9 7 39 39 H 1.09004 * 117.51592 * 145.03514 * 19 17 15 40 40 H 1.08996 * 117.49770 * 359.97438 * 19 17 15 41 41 H 1.08004 * 126.58507 * 0.26980 * 23 22 20 42 42 H 1.08000 * 126.57862 * 179.97438 * 24 23 22 43 43 H 1.08000 * 125.79478 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 -2.1329 1.1905 6 6 0.3746 -2.5660 1.7613 7 6 0.5716 -2.9409 3.2074 8 1 1.5507 -2.8639 3.6568 9 6 -0.4980 -3.3823 3.9571 10 7 -0.3262 -3.7090 5.2194 11 14 -2.1914 -3.5162 3.1800 12 1 -2.3618 -4.8703 2.5948 13 1 -3.2309 -3.2903 4.2160 14 1 -2.3277 -2.4943 2.1111 15 6 2.4715 -3.0330 0.6116 16 8 2.1509 -4.2017 0.5633 17 6 3.7858 -2.5875 0.0240 18 1 4.2829 -1.7718 0.5489 19 6 3.9347 -2.6441 -1.4984 20 6 4.6709 -3.6570 -0.6192 21 1 4.3028 -4.6830 -0.6170 22 6 6.1633 -3.5016 -0.4790 23 6 6.9933 -4.3788 0.1136 24 6 8.2953 -3.8349 0.0249 25 6 8.1830 -2.6576 -0.6160 26 8 6.8895 -2.4611 -0.9192 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9562 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 -0.3484 -1.7532 1.6918 37 1 0.0042 -3.4298 1.2092 38 1 -1.0786 -4.0199 5.7467 39 1 4.5299 -1.8655 -1.9754 40 1 3.0822 -3.0040 -2.0744 41 1 6.7180 -5.3184 0.5695 42 1 9.2053 -4.2790 0.4005 43 1 8.9953 -1.9845 -0.8477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865027305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:02 Heat of formation + Delta-G solvation = -19.432002 kcal Electronic energy + Delta-G solvation = -23613.416778 eV Core-core repulsion = 20239.418183 eV Total energy + Delta-G solvation = -3373.998595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.51038 -41.15952 -38.22816 -37.34372 -35.30254 -34.19097 -33.91064 -30.90557 -30.14399 -27.96906 -26.99692 -25.96019 -24.15729 -23.33599 -22.60671 -21.45840 -21.00232 -19.69337 -19.15478 -18.71000 -17.84473 -17.38688 -16.83379 -16.41073 -16.08245 -15.75200 -15.59539 -15.08938 -14.75503 -14.42613 -14.06784 -13.89824 -13.75538 -13.72617 -13.55773 -13.42287 -13.15799 -12.96473 -12.87641 -12.64678 -12.51777 -12.15119 -11.99417 -11.98128 -11.77444 -11.69686 -11.56681 -11.41187 -10.83724 -10.81790 -10.71025 -9.39820 -9.27733 -8.35266 -6.40085 0.69798 1.30359 1.34512 1.42840 1.55287 1.73393 1.98361 2.26913 2.29417 2.83626 2.99024 3.42807 3.58000 3.67484 3.93376 4.03552 4.04404 4.12430 4.17357 4.25416 4.37223 4.60424 4.62549 4.70017 4.74295 4.83199 4.86140 4.90915 4.92211 5.00410 5.04121 5.06263 5.09040 5.12546 5.20318 5.29681 5.43689 5.45294 5.53168 5.59601 5.67585 6.20332 6.22678 6.60989 6.67073 7.19401 7.37738 8.81980 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.004601 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.992922 B = 6083.680240 C = 7156.780312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.137 4.137 4 C 0.109 3.891 5 N -0.588 5.588 6 C 0.226 3.774 7 C -0.537 4.537 8 H 0.026 0.974 9 C 0.012 3.988 10 N -0.946 5.946 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.273 1.273 14 H -0.236 1.236 15 C 0.529 3.471 16 O -0.593 6.593 17 C -0.173 4.173 18 H 0.138 0.862 19 C -0.106 4.106 20 C -0.060 4.060 21 H 0.127 0.873 22 C 0.005 3.995 23 C -0.222 4.222 24 C -0.228 4.228 25 C -0.034 4.034 26 O -0.181 6.181 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.016 0.984 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.109 0.891 41 H 0.144 0.856 42 H 0.169 0.831 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.956 10.341 -16.664 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.194 4.194 4 C -0.013 4.013 5 N -0.317 5.317 6 C 0.104 3.896 7 C -0.576 4.576 8 H 0.044 0.956 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.767 3.233 12 H -0.202 1.202 13 H -0.199 1.199 14 H -0.159 1.159 15 C 0.318 3.682 16 O -0.475 6.475 17 C -0.194 4.194 18 H 0.156 0.844 19 C -0.143 4.143 20 C -0.079 4.079 21 H 0.145 0.855 22 C -0.044 4.044 23 C -0.241 4.241 24 C -0.246 4.246 25 C -0.100 4.100 26 O -0.078 6.078 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.128 0.872 41 H 0.162 0.838 42 H 0.186 0.814 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 12.548 9.959 -16.655 23.109 hybrid contribution -0.708 -0.999 0.976 1.566 sum 11.839 8.960 -15.679 21.594 Atomic orbital electron populations 1.21955 0.95815 1.01005 1.02158 1.21510 0.95988 0.97522 0.97346 1.21728 1.01581 0.93581 1.02560 1.21898 1.00816 0.79332 0.99253 1.47844 1.19767 1.08700 1.55348 1.19424 0.83083 0.95644 0.91465 1.21589 0.95510 1.44653 0.95818 0.95605 1.25833 1.03685 0.93968 0.95089 1.70050 1.33296 1.46069 1.09156 0.85764 0.78470 0.79831 0.79249 1.20157 1.19853 1.15948 1.20106 0.85404 0.84924 0.77796 1.90628 1.76335 1.19553 1.60977 1.22324 0.94547 1.03180 0.99370 0.84422 1.23166 1.01886 1.00387 0.88876 1.20379 0.84227 0.97574 1.05691 0.85477 1.21235 0.92199 0.88427 1.02579 1.21843 0.93962 1.02544 1.05737 1.22146 0.98488 0.97740 1.06275 1.24856 0.83662 0.99848 1.01664 1.83950 1.19416 1.40828 1.63576 0.94567 0.92937 0.90988 0.90441 0.91410 0.91093 0.92636 0.91263 0.89279 0.92533 0.96643 0.92268 0.84528 0.87221 0.83842 0.81382 0.73853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 8.18 71.98 0.59 -3.37 16 2 C -0.10 -2.46 3.13 -10.79 -0.03 -2.49 16 3 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 4 C 0.11 3.39 4.73 86.38 0.41 3.79 16 5 N -0.59 -24.29 2.28 -826.16 -1.88 -26.17 16 6 C 0.23 11.15 3.30 85.63 0.28 11.44 16 7 C -0.54 -32.28 9.94 25.60 0.25 -32.03 16 8 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 9 C 0.01 0.73 5.47 84.65 0.46 1.19 16 10 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 11 Si 0.94 44.99 27.47 68.60 1.88 46.88 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 15 C 0.53 21.99 7.46 87.66 0.65 22.65 16 16 O -0.59 -30.31 15.84 -3.04 -0.05 -30.36 16 17 C -0.17 -5.18 5.00 -11.52 -0.06 -5.24 16 18 H 0.14 3.68 6.44 -2.39 -0.02 3.67 16 19 C -0.11 -2.40 9.87 30.62 0.30 -2.10 16 20 C -0.06 -1.70 5.75 -11.54 -0.07 -1.77 16 21 H 0.13 4.06 7.67 -2.38 -0.02 4.04 16 22 C 0.01 0.14 6.80 24.83 0.17 0.31 16 23 C -0.22 -5.73 10.81 22.19 0.24 -5.49 16 24 C -0.23 -4.53 10.91 22.19 0.24 -4.29 16 25 C -0.03 -0.57 12.09 66.97 0.81 0.24 16 26 O -0.18 -4.05 10.36 -2.51 -0.03 -4.08 16 27 H 0.04 1.13 5.89 -2.39 -0.01 1.12 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.07 0.99 8.14 -2.38 -0.02 0.98 16 32 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 2.33 8.07 -2.39 -0.02 2.32 16 35 H 0.09 2.37 6.00 -2.39 -0.01 2.35 16 36 H 0.06 2.57 5.04 -2.39 -0.01 2.56 16 37 H 0.02 0.82 6.85 -2.38 -0.02 0.81 16 38 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 39 H 0.14 2.33 7.96 -2.39 -0.02 2.31 16 40 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.25 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -78.91 354.73 6.08 -72.83 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.94 Total: 20.18 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 4.92 Total: -18.84 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.59 Total: -86.61 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.07 Total: -34.44 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.88 kcal Total: -78.91 6.08 -72.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.398 kcal (2) G-P(sol) polarization free energy of solvation -78.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds