Wall clock time and date at job start Tue Mar 31 2020 07:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47266 * 2 1 4 4 C 1.52998 * 109.47280 * 239.99412 * 2 1 3 5 5 O 1.42906 * 109.46817 * 119.99670 * 2 1 3 6 6 C 1.35900 * 116.99896 * 56.55836 * 5 2 1 7 7 C 1.38811 * 120.02048 * 5.45152 * 6 5 2 8 8 C 1.38166 * 120.08140 * 179.97438 * 7 6 5 9 9 C 1.38160 * 120.12903 * 0.05349 * 8 7 6 10 10 C 1.38890 * 120.03897 * 359.94517 * 9 8 7 11 11 N 1.39924 * 120.04095 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99920 * 219.37107 * 11 10 9 13 13 O 1.21286 * 119.99677 * 6.25996 * 12 11 10 14 14 C 1.50695 * 120.00446 * 186.26674 * 12 11 10 15 15 C 1.52999 * 109.47676 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47142 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00223 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99747 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99778 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99754 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47232 * 90.00163 * 20 18 16 22 22 H 1.48510 * 109.46912 * 209.99904 * 20 18 16 23 23 H 1.48500 * 109.47572 * 329.99631 * 20 18 16 24 24 C 1.38585 * 120.02016 * 185.47357 * 6 5 2 25 25 H 1.08998 * 109.47530 * 311.70976 * 1 2 3 26 26 H 1.09002 * 109.46977 * 71.70456 * 1 2 3 27 27 H 1.08998 * 109.47462 * 191.70758 * 1 2 3 28 28 H 1.09004 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46990 * 299.99265 * 3 2 1 30 30 H 1.08996 * 109.47090 * 59.99593 * 3 2 1 31 31 H 1.08999 * 109.47466 * 279.58236 * 4 2 1 32 32 H 1.08999 * 109.47069 * 39.58085 * 4 2 1 33 33 H 1.09002 * 109.47262 * 159.58321 * 4 2 1 34 34 H 1.07998 * 119.95552 * 0.04796 * 7 6 5 35 35 H 1.08006 * 119.93405 * 180.02562 * 8 7 6 36 36 H 1.08002 * 119.98167 * 179.97438 * 9 8 7 37 37 H 0.97000 * 120.00361 * 39.36512 * 11 10 9 38 38 H 1.09004 * 109.46746 * 299.99761 * 14 12 11 39 39 H 1.08998 * 109.47210 * 59.99414 * 14 12 11 40 40 H 1.08999 * 109.46507 * 299.99986 * 15 14 12 41 41 H 1.08998 * 109.47198 * 59.99507 * 15 14 12 42 42 H 0.97001 * 119.99527 * 180.02562 * 19 18 16 43 43 H 1.08003 * 120.06232 * 0.25261 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5827 -1.9507 1.3581 7 6 0.8186 -2.5818 0.3862 8 6 0.3878 -3.8804 0.5790 9 6 0.7150 -4.5544 1.7399 10 6 1.4793 -3.9279 2.7157 11 7 1.8111 -4.6107 3.8911 12 6 1.8034 -3.9618 5.0725 13 8 1.4006 -2.8194 5.1342 14 6 2.2955 -4.6555 6.3165 15 6 2.1812 -3.7048 7.5098 16 6 2.6727 -4.3988 8.7538 17 1 3.0304 -5.4164 8.6990 18 6 2.6657 -3.7346 9.9622 19 7 2.2305 -2.4953 10.0288 20 14 3.2743 -4.5951 11.5044 21 1 4.7310 -4.3548 11.6632 22 1 2.5526 -4.0604 12.6870 23 1 3.0229 -6.0542 11.3892 24 6 1.9131 -2.6235 2.5238 25 1 -0.3634 0.6837 0.7671 26 1 -0.3633 0.3226 -0.9757 27 1 -0.3634 -1.0062 0.2085 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.9999 -1.7987 -1.0885 32 1 1.4144 -0.4577 -2.1019 33 1 3.0692 -0.4217 -1.4471 34 1 0.5616 -2.0576 -0.5224 35 1 -0.2063 -4.3693 -0.1789 36 1 0.3766 -5.5692 1.8883 37 1 2.0466 -5.5510 3.8559 38 1 1.6912 -5.5439 6.5001 39 1 3.3374 -4.9461 6.1824 40 1 2.7857 -2.8166 7.3258 41 1 1.1394 -3.4137 7.6440 42 1 2.2260 -2.0280 10.8788 43 1 2.5038 -2.1325 3.2830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888557988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:44 Heat of formation + Delta-G solvation = -44.890634 kcal Electronic energy + Delta-G solvation = -22846.166067 eV Core-core repulsion = 19471.063502 eV Total energy + Delta-G solvation = -3375.102565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96100 -39.69655 -37.56712 -34.48077 -34.12966 -33.48869 -31.19144 -30.02674 -29.66633 -27.69630 -27.39894 -25.71740 -23.08725 -22.80904 -21.55680 -20.23746 -19.66819 -17.79654 -17.01044 -16.76754 -15.97378 -15.73411 -15.56127 -15.39294 -14.96195 -14.44471 -14.11763 -13.93314 -13.68049 -13.62904 -13.16679 -12.82573 -12.59257 -12.52012 -12.21235 -12.18028 -12.10723 -11.89577 -11.71820 -11.21122 -11.02704 -10.94058 -10.83991 -10.64827 -10.60436 -9.99075 -9.91578 -9.70451 -9.24599 -9.07236 -8.34548 -8.31058 -7.92288 -5.96682 -4.01379 1.30078 1.48033 2.96645 3.13308 3.33399 3.39157 3.41563 3.49503 3.84389 4.44540 4.47124 4.52092 4.65910 4.83710 4.94612 5.15564 5.22248 5.25058 5.29342 5.38322 5.38663 5.40011 5.49891 5.53247 5.57102 5.59131 5.77641 5.92176 5.97425 6.01590 6.16189 6.16901 6.31202 6.31959 6.47178 6.48085 6.84401 7.01519 7.48908 7.70148 7.73556 7.83379 8.05386 8.36036 8.62740 9.06684 9.62254 11.14229 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.002952 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.465231 B = 9484.256966 C =10284.546865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.108 3.892 3 C -0.138 4.138 4 C -0.198 4.198 5 O -0.304 6.304 6 C 0.153 3.847 7 C -0.244 4.244 8 C -0.069 4.069 9 C -0.187 4.187 10 C 0.197 3.803 11 N -0.689 5.689 12 C 0.508 3.492 13 O -0.509 6.509 14 C -0.128 4.128 15 C 0.036 3.964 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.155 4.155 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.147 0.853 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.410 0.590 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 -0.247 -25.402 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.254 4.254 5 O -0.218 6.218 6 C 0.107 3.893 7 C -0.263 4.263 8 C -0.088 4.088 9 C -0.208 4.208 10 C 0.102 3.898 11 N -0.337 5.337 12 C 0.297 3.703 13 O -0.381 6.381 14 C -0.168 4.168 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.176 4.176 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.246 0.754 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.516 0.872 -25.011 25.152 hybrid contribution 0.273 -0.914 0.707 1.188 sum -2.242 -0.043 -24.304 24.407 Atomic orbital electron populations 1.22934 0.94854 1.05054 1.03082 1.21772 0.93986 0.93027 0.84154 1.21811 1.02193 0.92549 1.02974 1.22884 1.02373 1.02984 0.97207 1.86188 1.67800 1.23609 1.44205 1.18617 0.93521 0.83848 0.93321 1.21728 1.05953 0.97261 1.01356 1.20692 0.97906 0.93655 0.96524 1.20848 1.02559 1.01548 0.95812 1.17434 0.93886 0.91887 0.86606 1.43980 1.70023 1.14356 1.05297 1.21868 0.76657 0.87271 0.84460 1.90722 1.43593 1.18196 1.85630 1.21909 1.01264 1.01240 0.92418 1.18920 0.98492 0.93657 0.89073 1.21198 1.43053 0.99518 0.92866 0.92545 1.25031 0.95386 0.94886 0.99089 1.70001 1.46350 1.10627 1.25752 0.86579 0.78813 0.79705 0.82776 1.20655 1.21214 1.19882 1.20304 1.05469 0.94929 0.96913 0.91423 0.91140 0.89476 0.91475 0.90554 0.91339 0.89742 0.91132 0.91582 0.83605 0.85738 0.85774 0.75424 0.89892 0.89747 0.95707 0.95723 0.92914 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 8.07 37.16 0.30 -1.55 16 2 C 0.11 1.09 1.11 -90.62 -0.10 0.99 16 3 C -0.14 -1.18 8.72 37.16 0.32 -0.85 16 4 C -0.20 -1.60 8.10 37.16 0.30 -1.30 16 5 O -0.30 -4.32 9.79 -19.43 -0.19 -4.51 16 6 C 0.15 2.21 6.04 -39.24 -0.24 1.98 16 7 C -0.24 -2.80 5.72 -39.40 -0.23 -3.03 16 8 C -0.07 -0.74 10.03 -39.64 -0.40 -1.14 16 9 C -0.19 -2.26 9.97 -39.37 -0.39 -2.65 16 10 C 0.20 2.97 6.15 -83.72 -0.51 2.45 16 11 N -0.69 -10.21 5.32 -9.88 -0.05 -10.27 16 12 C 0.51 9.86 7.52 -10.99 -0.08 9.78 16 13 O -0.51 -12.13 14.14 5.55 0.08 -12.05 16 14 C -0.13 -2.57 5.64 -27.89 -0.16 -2.72 16 15 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 16 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.16 -2.60 8.60 -39.25 -0.34 -2.93 16 25 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 27 H 0.09 0.87 4.50 -51.93 -0.23 0.64 16 28 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.74 4.82 -51.93 -0.25 0.49 16 32 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 33 H 0.07 0.52 7.97 -51.93 -0.41 0.10 16 34 H 0.15 1.34 3.63 -52.49 -0.19 1.15 16 35 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.41 4.48 8.83 -40.82 -0.36 4.12 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.02 0.73 8.10 -51.93 -0.42 0.30 16 41 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.14 2.65 6.89 -52.48 -0.36 2.29 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -34.72 347.33 -7.65 -42.37 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.38 Total: 3.10 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.05 Total: -13.80 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.68 Total: -37.01 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.11 Total: -16.56 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.72 -7.65 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888557988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.518 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds