Wall clock time and date at job start Tue Mar 31 2020 07:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47266 * 2 1 4 4 C 1.52998 * 109.47280 * 239.99412 * 2 1 3 5 5 O 1.42906 * 109.46817 * 119.99670 * 2 1 3 6 6 C 1.35900 * 116.99896 * 56.55836 * 5 2 1 7 7 C 1.38811 * 120.02048 * 5.45152 * 6 5 2 8 8 C 1.38166 * 120.08140 * 179.97438 * 7 6 5 9 9 C 1.38160 * 120.12903 * 0.05349 * 8 7 6 10 10 C 1.38890 * 120.03897 * 359.94517 * 9 8 7 11 11 N 1.39924 * 120.04095 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99920 * 219.37107 * 11 10 9 13 13 O 1.21286 * 119.99677 * 6.25996 * 12 11 10 14 14 C 1.50695 * 120.00446 * 186.26674 * 12 11 10 15 15 C 1.52999 * 109.47676 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47142 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00223 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99747 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99778 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99754 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47232 * 90.00163 * 20 18 16 22 22 H 1.48510 * 109.46912 * 209.99904 * 20 18 16 23 23 H 1.48500 * 109.47572 * 329.99631 * 20 18 16 24 24 C 1.38585 * 120.02016 * 185.47357 * 6 5 2 25 25 H 1.08998 * 109.47530 * 311.70976 * 1 2 3 26 26 H 1.09002 * 109.46977 * 71.70456 * 1 2 3 27 27 H 1.08998 * 109.47462 * 191.70758 * 1 2 3 28 28 H 1.09004 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46990 * 299.99265 * 3 2 1 30 30 H 1.08996 * 109.47090 * 59.99593 * 3 2 1 31 31 H 1.08999 * 109.47466 * 279.58236 * 4 2 1 32 32 H 1.08999 * 109.47069 * 39.58085 * 4 2 1 33 33 H 1.09002 * 109.47262 * 159.58321 * 4 2 1 34 34 H 1.07998 * 119.95552 * 0.04796 * 7 6 5 35 35 H 1.08006 * 119.93405 * 180.02562 * 8 7 6 36 36 H 1.08002 * 119.98167 * 179.97438 * 9 8 7 37 37 H 0.97000 * 120.00361 * 39.36512 * 11 10 9 38 38 H 1.09004 * 109.46746 * 299.99761 * 14 12 11 39 39 H 1.08998 * 109.47210 * 59.99414 * 14 12 11 40 40 H 1.08999 * 109.46507 * 299.99986 * 15 14 12 41 41 H 1.08998 * 109.47198 * 59.99507 * 15 14 12 42 42 H 0.97001 * 119.99527 * 180.02562 * 19 18 16 43 43 H 1.08003 * 120.06232 * 0.25261 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5827 -1.9507 1.3581 7 6 0.8186 -2.5818 0.3862 8 6 0.3878 -3.8804 0.5790 9 6 0.7150 -4.5544 1.7399 10 6 1.4793 -3.9279 2.7157 11 7 1.8111 -4.6107 3.8911 12 6 1.8034 -3.9618 5.0725 13 8 1.4006 -2.8194 5.1342 14 6 2.2955 -4.6555 6.3165 15 6 2.1812 -3.7048 7.5098 16 6 2.6727 -4.3988 8.7538 17 1 3.0304 -5.4164 8.6990 18 6 2.6657 -3.7346 9.9622 19 7 2.2305 -2.4953 10.0288 20 14 3.2743 -4.5951 11.5044 21 1 4.7310 -4.3548 11.6632 22 1 2.5526 -4.0604 12.6870 23 1 3.0229 -6.0542 11.3892 24 6 1.9131 -2.6235 2.5238 25 1 -0.3634 0.6837 0.7671 26 1 -0.3633 0.3226 -0.9757 27 1 -0.3634 -1.0062 0.2085 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.9999 -1.7987 -1.0885 32 1 1.4144 -0.4577 -2.1019 33 1 3.0692 -0.4217 -1.4471 34 1 0.5616 -2.0576 -0.5224 35 1 -0.2063 -4.3693 -0.1789 36 1 0.3766 -5.5692 1.8883 37 1 2.0466 -5.5510 3.8559 38 1 1.6912 -5.5439 6.5001 39 1 3.3374 -4.9461 6.1824 40 1 2.7857 -2.8166 7.3258 41 1 1.1394 -3.4137 7.6440 42 1 2.2260 -2.0280 10.8788 43 1 2.5038 -2.1325 3.2830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888557988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:44 Heat of formation + Delta-G solvation = -68.031657 kcal Electronic energy + Delta-G solvation = -22847.169537 eV Core-core repulsion = 19471.063502 eV Total energy + Delta-G solvation = -3376.106035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97779 -41.03096 -38.72490 -35.72035 -35.55147 -35.07604 -33.11483 -31.08279 -30.81279 -28.35813 -28.34327 -27.52741 -24.57036 -23.80997 -23.06287 -21.37895 -21.05535 -18.97066 -18.71192 -17.81582 -17.52994 -16.90846 -16.81794 -16.44087 -16.35974 -16.28466 -15.10567 -15.07122 -14.85288 -14.62559 -14.37667 -14.18526 -14.13700 -13.60335 -13.28578 -13.19575 -13.18848 -12.88132 -12.82658 -12.68484 -12.59841 -12.48353 -11.96674 -11.91391 -11.75025 -11.67072 -11.41486 -11.32469 -11.07081 -10.79410 -10.57884 -9.46184 -8.95863 -8.19207 -6.33625 0.22636 0.46852 1.41594 1.44621 1.55529 1.60715 1.97891 2.34263 2.44551 2.80126 3.13946 3.71146 3.81382 3.91086 3.92658 3.95835 4.10757 4.26283 4.33429 4.44061 4.51030 4.57126 4.58595 4.63443 4.66473 4.71644 4.81886 4.88400 4.95364 5.04742 5.11419 5.21016 5.30056 5.33008 5.34620 5.40799 5.47382 5.50257 5.59461 5.82823 5.91696 6.15071 6.45998 6.54541 6.84695 7.20619 7.36792 8.93621 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.002952 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.465231 B = 9484.256966 C =10284.546865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.093 3.907 3 C -0.139 4.139 4 C -0.192 4.192 5 O -0.336 6.336 6 C 0.140 3.860 7 C -0.231 4.231 8 C -0.059 4.059 9 C -0.178 4.178 10 C 0.171 3.829 11 N -0.665 5.665 12 C 0.510 3.490 13 O -0.567 6.567 14 C -0.116 4.116 15 C 0.041 3.959 16 C -0.543 4.543 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.253 1.253 24 C -0.193 4.193 25 H 0.051 0.949 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.175 0.825 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.431 0.569 38 H 0.114 0.886 39 H 0.110 0.890 40 H -0.020 1.020 41 H -0.017 1.017 42 H 0.263 0.737 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 -3.056 -27.988 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.057 3.943 3 C -0.196 4.196 4 C -0.249 4.249 5 O -0.252 6.252 6 C 0.094 3.906 7 C -0.250 4.250 8 C -0.078 4.078 9 C -0.198 4.198 10 C 0.077 3.923 11 N -0.313 5.313 12 C 0.300 3.700 13 O -0.444 6.444 14 C -0.155 4.155 15 C 0.003 3.997 16 C -0.580 4.580 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.177 1.177 24 C -0.214 4.214 25 H 0.070 0.930 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.192 0.808 35 H 0.188 0.812 36 H 0.174 0.826 37 H 0.271 0.729 38 H 0.132 0.868 39 H 0.128 0.872 40 H -0.002 1.002 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.069 -2.000 -27.653 27.895 hybrid contribution 0.429 0.048 1.370 1.436 sum -2.640 -1.951 -26.284 26.488 Atomic orbital electron populations 1.22930 0.94045 1.04265 1.04427 1.22196 0.94807 0.93526 0.83798 1.21877 1.01954 0.92026 1.03699 1.22846 1.02998 1.02167 0.96903 1.86160 1.68568 1.23915 1.46512 1.18752 0.94274 0.84181 0.93429 1.22087 1.04010 0.97688 1.01177 1.21254 0.96798 0.93036 0.96684 1.21204 1.00858 1.02767 0.95004 1.17657 0.95686 0.91696 0.87268 1.43541 1.68707 1.15029 1.04057 1.21692 0.76127 0.86457 0.85715 1.90709 1.46468 1.20620 1.86568 1.21670 1.03546 1.00232 0.90061 1.18703 0.94896 0.93722 0.92347 1.21707 1.42538 1.00469 0.93318 0.90302 1.26176 0.95433 0.95547 1.03455 1.70192 1.48021 1.12824 1.26826 0.85292 0.78211 0.79209 0.77352 1.19766 1.21229 1.17687 1.20232 1.07361 0.96398 0.97449 0.93010 0.87852 0.90201 0.91956 0.87482 0.92905 0.90342 0.88128 0.91615 0.80823 0.81231 0.82625 0.72932 0.86826 0.87218 1.00157 0.99871 0.92872 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.36 8.07 71.98 0.58 -2.78 16 2 C 0.09 1.82 1.11 -10.79 -0.01 1.81 16 3 C -0.14 -2.32 8.72 71.98 0.63 -1.70 16 4 C -0.19 -2.66 8.10 71.98 0.58 -2.07 16 5 O -0.34 -10.14 9.79 -92.43 -0.90 -11.04 16 6 C 0.14 4.17 6.04 22.49 0.14 4.31 16 7 C -0.23 -4.83 5.72 22.39 0.13 -4.70 16 8 C -0.06 -1.05 10.03 22.23 0.22 -0.83 16 9 C -0.18 -3.81 9.97 22.41 0.22 -3.59 16 10 C 0.17 5.17 6.15 38.14 0.23 5.41 16 11 N -0.66 -19.65 5.32 -303.55 -1.62 -21.27 16 12 C 0.51 20.70 7.52 87.65 0.66 21.36 16 13 O -0.57 -29.40 14.14 -3.05 -0.04 -29.44 16 14 C -0.12 -4.67 5.64 29.85 0.17 -4.50 16 15 C 0.04 2.32 4.26 29.85 0.13 2.45 16 16 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 17 H 0.08 4.08 7.74 -2.91 -0.02 4.05 16 18 C -0.01 -0.52 5.46 84.66 0.46 -0.05 16 19 N -0.94 -60.55 13.29 21.45 0.28 -60.26 16 20 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 24 C -0.19 -6.95 8.60 22.49 0.19 -6.76 16 25 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 26 H 0.10 1.02 7.87 -2.39 -0.02 1.00 16 27 H 0.08 1.45 4.50 -2.39 -0.01 1.43 16 28 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.18 4.82 -2.39 -0.01 1.17 16 32 H 0.10 0.78 7.79 -2.39 -0.02 0.76 16 33 H 0.06 0.92 7.97 -2.39 -0.02 0.90 16 34 H 0.17 2.60 3.63 -2.91 -0.01 2.58 16 35 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.43 8.61 8.83 -92.71 -0.82 7.80 16 38 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 39 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 40 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 41 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 42 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 43 H 0.09 4.07 6.89 -2.91 -0.02 4.05 16 Total: -1.00 -83.85 347.33 4.51 -79.34 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.20 Total: 18.45 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.57 Total: -22.53 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.33 Total: -81.53 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.95 Total: -40.49 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -83.85 4.51 -79.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888557988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.310 kcal (2) G-P(sol) polarization free energy of solvation -83.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds