Wall clock time and date at job start Tue Mar 31 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46963 * 2 1 4 4 C 1.52995 * 109.46770 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46895 * 179.97438 * 4 3 2 6 6 O 1.41597 * 120.00026 * 255.00401 * 5 4 3 7 7 C 1.34773 * 119.99707 * 75.00158 * 5 4 3 8 8 O 1.21284 * 120.00085 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99804 * 179.97438 * 7 5 4 10 10 C 1.53001 * 109.47066 * 180.02562 * 9 7 5 11 11 H 1.08997 * 109.47486 * 54.05268 * 10 9 7 12 12 C 1.50698 * 109.46901 * 294.05498 * 10 9 7 13 13 H 1.08002 * 120.00397 * 330.08136 * 12 10 9 14 14 C 1.37877 * 119.99983 * 150.08139 * 12 10 9 15 15 N 1.31513 * 120.00147 * 6.55933 * 14 12 10 16 16 Si 1.86806 * 120.00054 * 186.55449 * 14 12 10 17 17 H 1.48501 * 109.47229 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.47340 * 300.00345 * 16 14 12 19 19 H 1.48505 * 109.46728 * 60.00313 * 16 14 12 20 20 C 1.50704 * 109.47322 * 174.05774 * 10 9 7 21 21 C 1.38229 * 119.99815 * 64.29797 * 20 10 9 22 22 C 1.38236 * 120.00027 * 179.81055 * 21 20 10 23 23 C 1.38243 * 119.99804 * 0.40118 * 22 21 20 24 24 C 1.38236 * 119.99618 * 359.85403 * 23 22 21 25 25 C 1.38229 * 120.00074 * 359.95579 * 24 23 22 26 26 H 1.09001 * 109.47275 * 299.99954 * 1 2 3 27 27 H 1.09003 * 109.47379 * 60.00258 * 1 2 3 28 28 H 1.09000 * 109.47605 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47275 * 240.00046 * 2 1 3 30 30 H 1.08993 * 109.46754 * 120.00187 * 2 1 3 31 31 H 1.09001 * 109.47088 * 59.99931 * 3 2 1 32 32 H 1.08993 * 109.46863 * 300.00037 * 3 2 1 33 33 H 1.09004 * 109.46724 * 60.00797 * 4 3 2 34 34 H 1.08992 * 109.47757 * 300.00459 * 4 3 2 35 35 H 0.96699 * 114.00136 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.47426 * 60.00323 * 9 7 5 37 37 H 1.09004 * 109.47237 * 299.99638 * 9 7 5 38 38 H 0.96997 * 119.99910 * 354.72326 * 15 14 12 39 39 H 1.08001 * 120.00499 * 0.02562 * 21 20 10 40 40 H 1.08004 * 120.00446 * 180.23518 * 22 21 20 41 41 H 1.08002 * 119.99679 * 179.83458 * 23 22 21 42 42 H 1.07995 * 119.99385 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 8 4.5939 3.3848 -1.1846 7 6 3.9976 3.5604 1.1270 8 8 3.5392 3.0797 2.1418 9 6 4.5004 4.9810 1.1265 10 6 4.3183 5.5869 2.5196 11 1 4.7937 4.9441 3.2605 12 6 2.8479 5.7059 2.8273 13 1 2.1392 5.8582 2.0267 14 6 2.4073 5.6203 4.1310 15 7 3.2763 5.5645 5.1165 16 14 0.5759 5.5836 4.4974 17 1 0.3664 5.4887 5.9645 18 1 -0.0563 6.8261 3.9859 19 1 -0.0383 4.4059 3.8331 20 6 4.9521 6.9536 2.5598 21 6 4.4528 7.9705 1.7677 22 6 5.0316 9.2252 1.8074 23 6 6.1150 9.4608 2.6332 24 6 6.6176 8.4423 3.4214 25 6 6.0363 7.1888 3.3845 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9336 0.9286 -0.8892 34 1 3.9329 0.9288 0.8907 35 1 4.5953 2.7811 -1.9400 36 1 3.9371 5.5656 0.3993 37 1 5.5577 4.9922 0.8613 38 1 4.2251 5.5064 4.9238 39 1 3.6083 7.7857 1.1203 40 1 4.6392 10.0208 1.1914 41 1 6.5689 10.4403 2.6622 42 1 7.4642 8.6263 4.0661 43 1 6.4287 6.3933 4.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904213262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:39 Heat of formation + Delta-G solvation = -28.131304 kcal Electronic energy + Delta-G solvation = -23588.652786 eV Core-core repulsion = 20214.276961 eV Total energy + Delta-G solvation = -3374.375826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.36495 -38.35559 -36.54510 -35.28531 -34.22078 -31.83071 -31.32005 -30.06855 -29.42416 -28.02166 -25.17344 -23.65670 -22.56199 -21.62141 -21.18549 -20.13353 -19.51676 -17.46434 -16.83894 -16.48527 -15.84475 -15.24443 -15.15027 -14.45220 -14.18890 -13.98148 -13.67765 -13.60343 -13.21786 -13.03569 -12.93027 -12.57674 -12.42989 -12.21324 -12.13503 -11.83295 -11.45413 -11.36734 -11.26015 -11.11153 -10.85448 -10.69210 -10.53543 -10.38755 -10.10971 -10.02592 -9.60428 -9.14424 -8.60637 -8.28402 -8.22762 -8.09467 -7.59243 -6.21204 -3.88642 2.23351 2.26000 2.37063 3.33669 3.50776 3.55791 3.71557 4.52148 4.63443 4.71519 4.82986 4.95269 5.07157 5.24006 5.47120 5.49882 5.58903 5.63340 5.67680 5.70331 5.79836 5.81458 5.84405 5.92879 6.12099 6.14350 6.20332 6.24224 6.26092 6.36846 6.43403 6.49448 6.72124 6.83284 6.96815 7.18059 7.24685 7.26941 7.42388 7.76321 7.88123 7.90896 8.26366 8.53415 8.84121 9.00261 9.80644 11.19019 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.005340 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.984530 B = 5242.609215 C = 6604.998215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.142 4.142 4 C 0.108 3.892 5 N -0.492 5.492 6 O -0.335 6.335 7 C 0.543 3.457 8 O -0.482 6.482 9 C -0.105 4.105 10 C 0.069 3.931 11 H 0.050 0.950 12 C -0.569 4.569 13 H 0.045 0.955 14 C 0.032 3.968 15 N -0.906 5.906 16 Si 1.062 2.938 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.289 1.289 20 C -0.029 4.029 21 C -0.107 4.107 22 C -0.130 4.130 23 C -0.153 4.153 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.380 0.620 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.270 0.730 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -5.815 -12.770 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.181 4.181 4 C -0.013 4.013 5 N -0.274 5.274 6 O -0.226 6.226 7 C 0.333 3.667 8 O -0.352 6.352 9 C -0.145 4.145 10 C 0.050 3.950 11 H 0.068 0.932 12 C -0.606 4.606 13 H 0.063 0.937 14 C -0.173 4.173 15 N -0.541 5.541 16 Si 0.891 3.109 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.215 1.215 20 C -0.030 4.030 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.171 4.171 24 C -0.143 4.143 25 C -0.148 4.148 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.224 0.776 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.836 -5.557 -10.518 11.925 hybrid contribution 1.038 -0.300 -1.968 2.246 sum 1.875 -5.857 -12.486 13.919 Atomic orbital electron populations 1.21757 0.95697 1.01337 1.02167 1.21427 0.96192 0.96320 1.01736 1.22067 0.95023 0.97292 1.03738 1.21832 0.94755 0.81809 1.02928 1.50142 1.63859 1.11767 1.01682 1.89100 1.83777 1.35367 1.14366 1.20721 0.77888 0.88376 0.79706 1.90815 1.43891 1.71614 1.28919 1.21575 0.99913 0.91313 1.01710 1.17930 0.97530 0.88266 0.91296 0.93169 1.21545 0.89761 1.54082 0.95214 0.93663 1.25576 1.06057 0.93176 0.92533 1.70755 1.03777 1.45683 1.33901 0.83660 0.74933 0.76246 0.76079 1.20940 1.21741 1.21517 1.20784 0.91119 0.98762 0.92288 1.20919 0.99174 0.92465 0.99950 1.21011 0.97043 0.96915 0.99805 1.20819 0.98581 0.98343 0.99399 1.20955 1.00072 0.93763 0.99508 1.21060 0.96891 0.96705 1.00176 0.92314 0.92903 0.92901 0.92383 0.91729 0.89925 0.91971 0.90552 0.89763 0.77568 0.90066 0.91491 0.91856 0.86753 0.87460 0.87601 0.87475 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.26 5.93 -26.73 -0.16 -1.42 16 3 C -0.14 -1.89 5.35 -26.73 -0.14 -2.04 16 4 C 0.11 1.40 5.57 -4.04 -0.02 1.38 16 5 N -0.49 -7.94 3.78 -60.30 -0.23 -8.17 16 6 O -0.33 -4.39 14.28 -11.47 -0.16 -4.56 16 7 C 0.54 11.39 7.34 -10.99 -0.08 11.31 16 8 O -0.48 -11.92 14.09 5.55 0.08 -11.84 16 9 C -0.11 -2.22 4.25 -27.88 -0.12 -2.34 16 10 C 0.07 1.70 1.31 -92.92 -0.12 1.58 16 11 H 0.05 1.37 6.23 -51.93 -0.32 1.05 16 12 C -0.57 -15.68 6.40 -34.44 -0.22 -15.90 16 13 H 0.05 1.26 7.82 -52.49 -0.41 0.85 16 14 C 0.03 0.93 5.45 -17.82 -0.10 0.84 16 15 N -0.91 -27.79 13.63 55.43 0.76 -27.03 16 16 Si 1.06 26.40 29.91 -169.99 -5.08 21.31 16 17 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 C -0.03 -0.66 4.77 -104.63 -0.50 -1.16 16 21 C -0.11 -2.27 8.88 -39.59 -0.35 -2.62 16 22 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 23 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 24 C -0.12 -2.36 10.05 -39.59 -0.40 -2.76 16 25 C -0.13 -2.80 9.67 -39.59 -0.38 -3.18 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.44 7.34 -51.93 -0.38 1.06 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.68 7.83 -51.93 -0.41 0.27 16 34 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 35 H 0.38 2.75 8.72 45.56 0.40 3.14 16 36 H 0.08 1.68 7.87 -51.93 -0.41 1.27 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.27 8.21 6.68 -40.82 -0.27 7.93 16 39 H 0.11 2.39 7.80 -52.49 -0.41 1.98 16 40 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.11 2.33 7.95 -52.49 -0.42 1.91 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -33.84 359.30 -8.32 -42.15 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.07 Total: 6.23 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -3.02 Total: -23.50 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.53 Total: -35.20 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.09 Total: -16.40 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -5.08 Total: 21.31 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.84 -8.32 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904213262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.019 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds