Wall clock time and date at job start Tue Mar 31 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46963 * 2 1 4 4 C 1.52995 * 109.46770 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46895 * 179.97438 * 4 3 2 6 6 O 1.41597 * 120.00026 * 255.00401 * 5 4 3 7 7 C 1.34773 * 119.99707 * 75.00158 * 5 4 3 8 8 O 1.21284 * 120.00085 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99804 * 179.97438 * 7 5 4 10 10 C 1.53001 * 109.47066 * 180.02562 * 9 7 5 11 11 H 1.08997 * 109.47486 * 54.05268 * 10 9 7 12 12 C 1.50698 * 109.46901 * 294.05498 * 10 9 7 13 13 H 1.08002 * 120.00397 * 330.08136 * 12 10 9 14 14 C 1.37877 * 119.99983 * 150.08139 * 12 10 9 15 15 N 1.31513 * 120.00147 * 6.55933 * 14 12 10 16 16 Si 1.86806 * 120.00054 * 186.55449 * 14 12 10 17 17 H 1.48501 * 109.47229 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.47340 * 300.00345 * 16 14 12 19 19 H 1.48505 * 109.46728 * 60.00313 * 16 14 12 20 20 C 1.50704 * 109.47322 * 174.05774 * 10 9 7 21 21 C 1.38229 * 119.99815 * 64.29797 * 20 10 9 22 22 C 1.38236 * 120.00027 * 179.81055 * 21 20 10 23 23 C 1.38243 * 119.99804 * 0.40118 * 22 21 20 24 24 C 1.38236 * 119.99618 * 359.85403 * 23 22 21 25 25 C 1.38229 * 120.00074 * 359.95579 * 24 23 22 26 26 H 1.09001 * 109.47275 * 299.99954 * 1 2 3 27 27 H 1.09003 * 109.47379 * 60.00258 * 1 2 3 28 28 H 1.09000 * 109.47605 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47275 * 240.00046 * 2 1 3 30 30 H 1.08993 * 109.46754 * 120.00187 * 2 1 3 31 31 H 1.09001 * 109.47088 * 59.99931 * 3 2 1 32 32 H 1.08993 * 109.46863 * 300.00037 * 3 2 1 33 33 H 1.09004 * 109.46724 * 60.00797 * 4 3 2 34 34 H 1.08992 * 109.47757 * 300.00459 * 4 3 2 35 35 H 0.96699 * 114.00136 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.47426 * 60.00323 * 9 7 5 37 37 H 1.09004 * 109.47237 * 299.99638 * 9 7 5 38 38 H 0.96997 * 119.99910 * 354.72326 * 15 14 12 39 39 H 1.08001 * 120.00499 * 0.02562 * 21 20 10 40 40 H 1.08004 * 120.00446 * 180.23518 * 22 21 20 41 41 H 1.08002 * 119.99679 * 179.83458 * 23 22 21 42 42 H 1.07995 * 119.99385 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 8 4.5939 3.3848 -1.1846 7 6 3.9976 3.5604 1.1270 8 8 3.5392 3.0797 2.1418 9 6 4.5004 4.9810 1.1265 10 6 4.3183 5.5869 2.5196 11 1 4.7937 4.9441 3.2605 12 6 2.8479 5.7059 2.8273 13 1 2.1392 5.8582 2.0267 14 6 2.4073 5.6203 4.1310 15 7 3.2763 5.5645 5.1165 16 14 0.5759 5.5836 4.4974 17 1 0.3664 5.4887 5.9645 18 1 -0.0563 6.8261 3.9859 19 1 -0.0383 4.4059 3.8331 20 6 4.9521 6.9536 2.5598 21 6 4.4528 7.9705 1.7677 22 6 5.0316 9.2252 1.8074 23 6 6.1150 9.4608 2.6332 24 6 6.6176 8.4423 3.4214 25 6 6.0363 7.1888 3.3845 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9336 0.9286 -0.8892 34 1 3.9329 0.9288 0.8907 35 1 4.5953 2.7811 -1.9400 36 1 3.9371 5.5656 0.3993 37 1 5.5577 4.9922 0.8613 38 1 4.2251 5.5064 4.9238 39 1 3.6083 7.7857 1.1203 40 1 4.6392 10.0208 1.1914 41 1 6.5689 10.4403 2.6622 42 1 7.4642 8.6263 4.0661 43 1 6.4287 6.3933 4.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904213262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:38 Heat of formation + Delta-G solvation = -49.509032 kcal Electronic energy + Delta-G solvation = -23589.579794 eV Core-core repulsion = 20214.276961 eV Total energy + Delta-G solvation = -3375.302833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93176 -39.91163 -37.91241 -36.38726 -35.99940 -33.31939 -33.00989 -31.62280 -30.90190 -29.35780 -26.98547 -25.22185 -24.05345 -23.19174 -22.18651 -21.70430 -21.12237 -19.02106 -18.43500 -18.13342 -17.32264 -16.69575 -16.31309 -16.02695 -15.68719 -15.64438 -15.43153 -14.96744 -14.62694 -14.46550 -14.08140 -14.01977 -13.94136 -13.70491 -13.52001 -13.34325 -13.16514 -12.77195 -12.62200 -12.32154 -12.21561 -12.09379 -12.02676 -11.95761 -11.73999 -11.53140 -11.49171 -10.84588 -10.64862 -10.35210 -9.65399 -9.59149 -9.28411 -8.46875 -6.12607 0.66595 0.72472 1.11740 1.46136 1.57047 1.70669 1.72811 2.59502 3.08951 3.28778 3.42711 3.85052 3.93923 4.11066 4.13455 4.25527 4.29265 4.30862 4.41663 4.45878 4.46892 4.49871 4.63503 4.64987 4.81213 4.83430 4.85348 4.92360 5.00206 5.08369 5.21340 5.22650 5.31655 5.39123 5.40864 5.41919 5.73099 5.79922 5.89362 5.93748 6.22897 6.29269 6.37741 6.72333 6.77268 7.34408 7.62864 8.93292 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.005340 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.984530 B = 5242.609215 C = 6604.998215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.106 3.894 5 N -0.485 5.485 6 O -0.332 6.332 7 C 0.535 3.465 8 O -0.535 6.535 9 C -0.097 4.097 10 C 0.073 3.927 11 H 0.009 0.991 12 C -0.559 4.559 13 H 0.036 0.964 14 C -0.023 4.023 15 N -0.939 5.939 16 Si 1.098 2.902 17 H -0.286 1.286 18 H -0.268 1.268 19 H -0.284 1.284 20 C -0.055 4.055 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.144 4.144 24 C -0.124 4.124 25 C -0.153 4.153 26 H 0.034 0.966 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.068 0.932 35 H 0.409 0.591 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.258 0.742 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.137 0.863 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -4.922 -15.556 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.176 4.176 4 C -0.014 4.014 5 N -0.263 5.263 6 O -0.229 6.229 7 C 0.325 3.675 8 O -0.411 6.411 9 C -0.137 4.137 10 C 0.053 3.947 11 H 0.028 0.972 12 C -0.597 4.597 13 H 0.054 0.946 14 C -0.221 4.221 15 N -0.577 5.577 16 Si 0.922 3.078 17 H -0.212 1.212 18 H -0.194 1.194 19 H -0.210 1.210 20 C -0.055 4.055 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.162 4.162 24 C -0.142 4.142 25 C -0.172 4.172 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.086 0.914 35 H 0.258 0.742 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.128 0.872 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.293 -4.687 -13.392 14.248 hybrid contribution 1.013 -0.572 -1.292 1.739 sum 2.306 -5.260 -14.685 15.768 Atomic orbital electron populations 1.21776 0.95658 1.02296 1.01382 1.21413 0.96221 0.94463 1.03003 1.21988 0.95263 0.98774 1.01555 1.22105 0.94494 0.79981 1.04853 1.49674 1.62252 1.12363 1.02005 1.89082 1.83250 1.36478 1.14091 1.20553 0.77826 0.88572 0.80525 1.90790 1.46269 1.72702 1.31311 1.21411 1.00861 0.91800 0.99633 1.17740 0.95636 0.89213 0.92062 0.97241 1.21753 0.91404 1.51996 0.94520 0.94566 1.26754 1.09026 0.93247 0.93117 1.70848 1.03363 1.49028 1.34469 0.83190 0.71449 0.77287 0.75851 1.21183 1.19351 1.21005 1.20598 0.92668 0.97989 0.94289 1.20988 0.99617 0.93466 1.00205 1.21408 0.96654 0.96439 0.99724 1.21319 0.97631 0.99678 0.97536 1.21311 1.00506 0.92655 0.99734 1.21132 0.97557 0.98074 1.00390 0.94703 0.92126 0.91060 0.89011 0.92439 0.95127 0.91051 0.84993 0.91368 0.74155 0.89625 0.90067 0.93177 0.87234 0.83918 0.83360 0.84505 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.11 -2.24 5.93 30.60 0.18 -2.06 16 3 C -0.14 -3.59 5.35 30.59 0.16 -3.43 16 4 C 0.11 2.59 5.57 86.38 0.48 3.07 16 5 N -0.48 -15.31 3.78 -463.07 -1.75 -17.06 16 6 O -0.33 -7.87 14.28 -38.78 -0.55 -8.42 16 7 C 0.53 23.31 7.34 87.66 0.64 23.96 16 8 O -0.54 -28.29 14.09 -3.04 -0.04 -28.34 16 9 C -0.10 -4.24 4.25 29.85 0.13 -4.11 16 10 C 0.07 3.78 1.31 -12.29 -0.02 3.77 16 11 H 0.01 0.56 6.23 -2.39 -0.01 0.54 16 12 C -0.56 -32.27 6.40 25.60 0.16 -32.10 16 13 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16 14 C -0.02 -1.39 5.45 84.65 0.46 -0.92 16 15 N -0.94 -60.70 13.63 21.45 0.29 -60.41 16 16 Si 1.10 54.95 29.91 68.60 2.05 57.00 16 17 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 20 C -0.05 -2.58 4.77 -19.87 -0.09 -2.68 16 21 C -0.12 -5.24 8.88 22.27 0.20 -5.04 16 22 C -0.12 -4.29 10.05 22.27 0.22 -4.06 16 23 C -0.14 -4.63 10.05 22.27 0.22 -4.40 16 24 C -0.12 -4.47 10.05 22.27 0.22 -4.24 16 25 C -0.15 -6.76 9.67 22.27 0.22 -6.54 16 26 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.03 1.12 7.34 -2.39 -0.02 1.10 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.13 1.77 7.83 -2.39 -0.02 1.75 16 34 H 0.07 1.93 7.90 -2.39 -0.02 1.92 16 35 H 0.41 4.19 8.72 -74.06 -0.65 3.55 16 36 H 0.09 3.60 7.87 -2.39 -0.02 3.59 16 37 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 38 H 0.26 16.80 6.68 -92.71 -0.62 16.18 16 39 H 0.11 4.59 7.80 -2.91 -0.02 4.57 16 40 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 41 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 43 H 0.10 4.37 7.95 -2.91 -0.02 4.35 16 Total: -1.00 -79.74 359.30 4.40 -75.35 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.49 Total: 23.04 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 3.91 Total: -41.16 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -1.46 Total: -77.47 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -0.60 Total: -36.76 kcal Atomic # 14 Polarization: 54.95 SS G_CDS: 2.05 Total: 57.00 kcal Total: -79.74 4.40 -75.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904213262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.836 kcal (2) G-P(sol) polarization free energy of solvation -79.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds