Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46974 * 2 1 4 4 C 1.53002 * 109.46719 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46939 * 179.97438 * 4 3 2 6 6 O 1.41603 * 120.00029 * 255.28126 * 5 4 3 7 7 C 1.34771 * 120.00271 * 74.99606 * 5 4 3 8 8 O 1.21288 * 120.00007 * 0.02562 * 7 5 4 9 9 C 1.50701 * 120.00353 * 179.97438 * 7 5 4 10 10 C 1.52998 * 109.47176 * 180.02562 * 9 7 5 11 11 H 1.09006 * 109.47389 * 304.99928 * 10 9 7 12 12 C 1.50706 * 109.47403 * 65.00140 * 10 9 7 13 13 H 1.07992 * 119.99809 * 234.68086 * 12 10 9 14 14 C 1.37875 * 119.99673 * 54.67780 * 12 10 9 15 15 N 1.31519 * 119.99987 * 4.87208 * 14 12 10 16 16 Si 1.86800 * 119.99787 * 184.87491 * 14 12 10 17 17 H 1.48503 * 109.47100 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47006 * 119.99931 * 16 14 12 19 19 H 1.48493 * 109.46918 * 239.99859 * 16 14 12 20 20 C 1.50699 * 109.47121 * 185.00218 * 10 9 7 21 21 C 1.38234 * 120.00043 * 151.48706 * 20 10 9 22 22 C 1.38236 * 119.99737 * 179.78857 * 21 20 10 23 23 C 1.38235 * 120.00363 * 0.44018 * 22 21 20 24 24 C 1.38241 * 119.99573 * 359.81062 * 23 22 21 25 25 C 1.38225 * 120.00001 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47035 * 300.00328 * 1 2 3 28 28 H 1.09004 * 109.46879 * 60.00305 * 1 2 3 29 29 H 1.08994 * 109.47302 * 239.99757 * 2 1 3 30 30 H 1.09004 * 109.46879 * 119.99695 * 2 1 3 31 31 H 1.08997 * 109.46821 * 59.99887 * 3 2 1 32 32 H 1.08996 * 109.46780 * 299.99809 * 3 2 1 33 33 H 1.09002 * 109.46954 * 59.99878 * 4 3 2 34 34 H 1.08996 * 109.47546 * 299.99595 * 4 3 2 35 35 H 0.96700 * 113.99689 * 359.71922 * 6 5 4 36 36 H 1.08997 * 109.46927 * 300.00491 * 9 7 5 37 37 H 1.08996 * 109.47229 * 60.00384 * 9 7 5 38 38 H 0.97006 * 119.99636 * 180.02562 * 15 14 12 39 39 H 1.07991 * 120.00052 * 359.97438 * 21 20 10 40 40 H 1.08006 * 120.00099 * 180.27312 * 22 21 20 41 41 H 1.08004 * 120.00361 * 179.83700 * 23 22 21 42 42 H 1.07997 * 119.99446 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.00006 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 8 4.5887 3.3867 -1.1862 7 6 3.9977 3.5605 1.1269 8 8 3.5392 3.0799 2.1417 9 6 4.5006 4.9811 1.1264 10 6 4.3184 5.5870 2.5194 11 1 3.2752 5.4954 2.8220 12 6 5.1932 4.8548 3.5042 13 1 4.7598 4.4218 4.3935 14 6 6.5468 4.7379 3.2696 15 7 7.0904 5.3458 2.2378 16 14 7.6087 3.7158 4.4173 17 1 6.7622 3.1393 5.4928 18 1 8.2506 2.6175 3.6510 19 1 8.6572 4.5774 5.0201 20 6 4.7063 7.0429 2.4886 21 6 4.1176 7.9339 3.3664 22 6 4.4767 9.2685 3.3410 23 6 5.4178 9.7139 2.4317 24 6 6.0028 8.8239 1.5504 25 6 5.6469 7.4885 1.5788 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9289 0.8908 35 1 4.5908 2.7826 -1.9413 36 1 5.5577 4.9922 0.8611 37 1 3.9373 5.5657 0.3991 38 1 8.0427 5.2632 2.0726 39 1 3.3794 7.5867 4.0740 40 1 4.0200 9.9639 4.0298 41 1 5.6965 10.7572 2.4101 42 1 6.7383 9.1718 0.8403 43 1 6.1043 6.7930 0.8905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904213263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -18.226959 kcal Electronic energy + Delta-G solvation = -23775.030648 eV Core-core repulsion = 20401.084307 eV Total energy + Delta-G solvation = -3373.946341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.16710 -38.08422 -36.36060 -35.22206 -34.15875 -31.70634 -31.03101 -29.79560 -29.10092 -27.83132 -25.77538 -23.71455 -22.29263 -21.36206 -21.13490 -19.92692 -19.20923 -17.24959 -16.61225 -15.99290 -15.58677 -15.16092 -15.06939 -14.66653 -14.04264 -13.81837 -13.60676 -13.55819 -13.02870 -12.88371 -12.84728 -12.48935 -12.17355 -12.07535 -11.63943 -11.46303 -11.34405 -11.30127 -11.22379 -11.11386 -10.88711 -10.72993 -10.55808 -10.32874 -10.11560 -9.87860 -9.22649 -9.14485 -8.83838 -8.39067 -8.07652 -7.74634 -7.37907 -5.92036 -4.02560 2.52328 2.56626 2.64461 3.31725 3.39679 3.46530 3.58599 4.46873 4.70212 4.85467 4.98586 5.03701 5.07169 5.29936 5.31704 5.52883 5.60556 5.73377 5.82277 5.86187 5.88616 5.95790 6.04214 6.07815 6.12561 6.26526 6.38862 6.47138 6.56360 6.68815 6.79778 6.84165 7.16622 7.21215 7.33520 7.38009 7.56954 7.62945 7.76990 7.98893 8.08724 8.19513 8.24667 8.40132 8.93445 9.07423 9.60454 11.01765 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.005037 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.274802 B = 5557.206001 C = 6363.313989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.139 4.139 4 C 0.106 3.894 5 N -0.492 5.492 6 O -0.329 6.329 7 C 0.552 3.448 8 O -0.510 6.510 9 C -0.127 4.127 10 C 0.084 3.916 11 H 0.036 0.964 12 C -0.473 4.473 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.026 4.026 21 C -0.132 4.132 22 C -0.142 4.142 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.067 4.067 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.376 0.624 36 H 0.136 0.864 37 H 0.054 0.946 38 H 0.260 0.740 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 -4.642 -8.566 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.178 4.178 4 C -0.016 4.016 5 N -0.273 5.273 6 O -0.220 6.220 7 C 0.345 3.655 8 O -0.384 6.384 9 C -0.167 4.167 10 C 0.065 3.935 11 H 0.054 0.946 12 C -0.510 4.510 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.026 4.026 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.173 4.173 24 C -0.162 4.162 25 C -0.086 4.086 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.220 0.780 36 H 0.153 0.847 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.575 -4.352 -7.644 10.982 hybrid contribution 0.972 -0.961 0.006 1.367 sum -5.603 -5.313 -7.638 10.861 Atomic orbital electron populations 1.21753 0.95797 1.01326 1.01969 1.21444 0.96017 0.96488 1.01890 1.22042 0.95345 0.97106 1.03273 1.21809 0.94345 0.82440 1.02983 1.50083 1.63743 1.11545 1.01896 1.89167 1.84449 1.34488 1.13881 1.21029 0.76353 0.89108 0.79023 1.90678 1.46017 1.72844 1.28838 1.21837 1.05640 0.89033 1.00159 1.17708 0.95942 0.87716 0.92138 0.94554 1.21018 0.91924 1.31189 1.06895 0.92208 1.24906 0.97826 0.95552 0.95739 1.69707 1.11680 1.42587 1.28571 0.86548 0.80338 0.80146 0.81157 1.19790 1.21243 1.21201 1.20320 0.94057 0.95857 0.92399 1.20891 1.01346 0.92997 0.99827 1.20789 0.99715 0.95773 0.99772 1.20761 0.99750 0.98298 0.98463 1.21047 1.00663 0.94602 0.99855 1.21389 0.94624 0.93659 0.98912 0.92920 0.92508 0.92905 0.92283 0.91719 0.90395 0.92025 0.90682 0.89834 0.77966 0.84693 0.92749 0.93002 0.87677 0.88126 0.88330 0.88098 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.14 -1.77 5.35 -26.73 -0.14 -1.92 16 4 C 0.11 1.47 5.57 -4.04 -0.02 1.45 16 5 N -0.49 -8.66 3.78 -60.29 -0.23 -8.88 16 6 O -0.33 -4.97 14.28 -11.47 -0.16 -5.14 16 7 C 0.55 12.21 7.33 -10.99 -0.08 12.13 16 8 O -0.51 -12.48 14.06 5.55 0.08 -12.40 16 9 C -0.13 -2.91 3.39 -27.88 -0.09 -3.01 16 10 C 0.08 2.09 1.97 -92.92 -0.18 1.90 16 11 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 12 C -0.47 -12.90 7.27 -34.44 -0.25 -13.15 16 13 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 14 C 0.06 1.60 5.12 -17.82 -0.09 1.51 16 15 N -0.89 -23.36 7.99 55.43 0.44 -22.92 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 21 C -0.13 -2.91 9.71 -39.58 -0.38 -3.29 16 22 C -0.14 -2.82 10.05 -39.58 -0.40 -3.21 16 23 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 24 C -0.14 -2.96 10.05 -39.58 -0.40 -3.35 16 25 C -0.07 -1.54 7.45 -39.59 -0.30 -1.84 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.23 7.34 -51.93 -0.38 0.85 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 34 H 0.08 1.30 7.90 -51.93 -0.41 0.88 16 35 H 0.38 3.39 8.72 45.56 0.40 3.79 16 36 H 0.14 3.35 4.70 -51.93 -0.24 3.10 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.11 2.18 8.06 -52.49 -0.42 1.75 16 40 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 41 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 42 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.14 3.33 5.18 -52.48 -0.27 3.05 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -30.57 349.74 -8.56 -39.13 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.92 Total: 7.92 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -3.02 Total: -19.72 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.21 Total: -31.80 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.09 Total: -17.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.57 -8.56 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904213263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.902 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds