Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46974 * 2 1 4 4 C 1.53002 * 109.46719 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46939 * 179.97438 * 4 3 2 6 6 O 1.41603 * 120.00029 * 255.28126 * 5 4 3 7 7 C 1.34771 * 120.00271 * 74.99606 * 5 4 3 8 8 O 1.21288 * 120.00007 * 0.02562 * 7 5 4 9 9 C 1.50701 * 120.00353 * 179.97438 * 7 5 4 10 10 C 1.52998 * 109.47176 * 180.02562 * 9 7 5 11 11 H 1.09006 * 109.47389 * 304.99928 * 10 9 7 12 12 C 1.50706 * 109.47403 * 65.00140 * 10 9 7 13 13 H 1.07992 * 119.99809 * 234.68086 * 12 10 9 14 14 C 1.37875 * 119.99673 * 54.67780 * 12 10 9 15 15 N 1.31519 * 119.99987 * 4.87208 * 14 12 10 16 16 Si 1.86800 * 119.99787 * 184.87491 * 14 12 10 17 17 H 1.48503 * 109.47100 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47006 * 119.99931 * 16 14 12 19 19 H 1.48493 * 109.46918 * 239.99859 * 16 14 12 20 20 C 1.50699 * 109.47121 * 185.00218 * 10 9 7 21 21 C 1.38234 * 120.00043 * 151.48706 * 20 10 9 22 22 C 1.38236 * 119.99737 * 179.78857 * 21 20 10 23 23 C 1.38235 * 120.00363 * 0.44018 * 22 21 20 24 24 C 1.38241 * 119.99573 * 359.81062 * 23 22 21 25 25 C 1.38225 * 120.00001 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47035 * 300.00328 * 1 2 3 28 28 H 1.09004 * 109.46879 * 60.00305 * 1 2 3 29 29 H 1.08994 * 109.47302 * 239.99757 * 2 1 3 30 30 H 1.09004 * 109.46879 * 119.99695 * 2 1 3 31 31 H 1.08997 * 109.46821 * 59.99887 * 3 2 1 32 32 H 1.08996 * 109.46780 * 299.99809 * 3 2 1 33 33 H 1.09002 * 109.46954 * 59.99878 * 4 3 2 34 34 H 1.08996 * 109.47546 * 299.99595 * 4 3 2 35 35 H 0.96700 * 113.99689 * 359.71922 * 6 5 4 36 36 H 1.08997 * 109.46927 * 300.00491 * 9 7 5 37 37 H 1.08996 * 109.47229 * 60.00384 * 9 7 5 38 38 H 0.97006 * 119.99636 * 180.02562 * 15 14 12 39 39 H 1.07991 * 120.00052 * 359.97438 * 21 20 10 40 40 H 1.08006 * 120.00099 * 180.27312 * 22 21 20 41 41 H 1.08004 * 120.00361 * 179.83700 * 23 22 21 42 42 H 1.07997 * 119.99446 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.00006 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 8 4.5887 3.3867 -1.1862 7 6 3.9977 3.5605 1.1269 8 8 3.5392 3.0799 2.1417 9 6 4.5006 4.9811 1.1264 10 6 4.3184 5.5870 2.5194 11 1 3.2752 5.4954 2.8220 12 6 5.1932 4.8548 3.5042 13 1 4.7598 4.4218 4.3935 14 6 6.5468 4.7379 3.2696 15 7 7.0904 5.3458 2.2378 16 14 7.6087 3.7158 4.4173 17 1 6.7622 3.1393 5.4928 18 1 8.2506 2.6175 3.6510 19 1 8.6572 4.5774 5.0201 20 6 4.7063 7.0429 2.4886 21 6 4.1176 7.9339 3.3664 22 6 4.4767 9.2685 3.3410 23 6 5.4178 9.7139 2.4317 24 6 6.0028 8.8239 1.5504 25 6 5.6469 7.4885 1.5788 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9289 0.8908 35 1 4.5908 2.7826 -1.9413 36 1 5.5577 4.9922 0.8611 37 1 3.9373 5.5657 0.3991 38 1 8.0427 5.2632 2.0726 39 1 3.3794 7.5867 4.0740 40 1 4.0200 9.9639 4.0298 41 1 5.6965 10.7572 2.4101 42 1 6.7383 9.1718 0.8403 43 1 6.1043 6.7930 0.8905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904213263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -35.798657 kcal Electronic energy + Delta-G solvation = -23775.792614 eV Core-core repulsion = 20401.084307 eV Total energy + Delta-G solvation = -3374.708307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79039 -39.71072 -37.80083 -36.33678 -35.91610 -32.97224 -32.94522 -31.43651 -30.58675 -29.29855 -27.56620 -25.10078 -23.90003 -22.94735 -22.13270 -21.52975 -20.87668 -18.78479 -18.09906 -17.88329 -17.10218 -16.91126 -16.31471 -16.18693 -15.63245 -15.44890 -15.09285 -14.93031 -14.52471 -14.39584 -13.91938 -13.80251 -13.74055 -13.41559 -13.28724 -13.21254 -13.12113 -12.82316 -12.68894 -12.35821 -12.19675 -12.17978 -11.99180 -11.86811 -11.68167 -11.49420 -11.07082 -11.04170 -10.67398 -10.32747 -9.49456 -9.39912 -9.11380 -7.93419 -6.10829 0.88799 1.00403 1.22199 1.34600 1.38093 1.48723 1.88108 2.44834 3.20052 3.37750 3.49794 3.89388 3.99660 4.16245 4.32973 4.36120 4.41596 4.50516 4.53279 4.59808 4.68702 4.70939 4.83850 4.87783 4.90530 4.95042 5.06426 5.08715 5.15324 5.24300 5.32891 5.36977 5.44289 5.54150 5.64598 5.67511 5.87575 5.94754 6.04071 6.11040 6.36539 6.43298 6.58156 6.80181 6.87134 7.46184 7.51993 8.95663 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.005037 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.274802 B = 5557.206001 C = 6363.313989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.131 4.131 4 C 0.102 3.898 5 N -0.488 5.488 6 O -0.333 6.333 7 C 0.543 3.457 8 O -0.548 6.548 9 C -0.116 4.116 10 C 0.085 3.915 11 H 0.015 0.985 12 C -0.492 4.492 13 H 0.031 0.969 14 C 0.031 3.969 15 N -0.885 5.885 16 Si 0.932 3.068 17 H -0.283 1.283 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.051 4.051 21 C -0.152 4.152 22 C -0.139 4.139 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.082 4.082 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.405 0.595 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.260 0.740 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.126 0.874 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 -4.143 -10.241 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.170 4.170 4 C -0.018 4.018 5 N -0.265 5.265 6 O -0.229 6.229 7 C 0.334 3.666 8 O -0.425 6.425 9 C -0.155 4.155 10 C 0.066 3.934 11 H 0.034 0.966 12 C -0.530 4.530 13 H 0.050 0.950 14 C -0.168 4.168 15 N -0.524 5.524 16 Si 0.759 3.241 17 H -0.209 1.209 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.051 4.051 21 C -0.170 4.170 22 C -0.157 4.157 23 C -0.166 4.166 24 C -0.166 4.166 25 C -0.101 4.101 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.254 0.746 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.144 0.856 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.011 -3.878 -9.383 11.799 hybrid contribution 0.770 -1.078 0.431 1.394 sum -5.241 -4.957 -8.952 11.496 Atomic orbital electron populations 1.21759 0.95225 1.02273 1.01615 1.21427 0.96499 0.94578 1.02815 1.21953 0.94482 0.98725 1.01845 1.22097 0.95055 0.80273 1.04366 1.49697 1.62405 1.12372 1.02060 1.89142 1.84088 1.35813 1.13844 1.20774 0.76618 0.89225 0.79943 1.90651 1.47662 1.73544 1.30653 1.21605 1.04664 0.90156 0.99122 1.17602 0.94205 0.88981 0.92607 0.96618 1.20974 0.92799 1.32447 1.06737 0.95043 1.25307 0.98289 0.96288 0.96937 1.69821 1.11639 1.42382 1.28590 0.85907 0.79087 0.79315 0.79760 1.20879 1.20631 1.20541 1.20296 0.95495 0.95385 0.93971 1.21083 1.01820 0.94241 0.99831 1.21169 0.99334 0.95120 1.00069 1.21204 0.98410 0.99983 0.96987 1.21357 1.00943 0.93736 1.00532 1.21304 0.95020 0.94808 0.98956 0.91309 0.94063 0.92127 0.89590 0.92487 0.94330 0.90907 0.85802 0.91844 0.74628 0.86213 0.92009 0.92969 0.87709 0.84784 0.84453 0.85645 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.95 16 2 C -0.12 -2.18 5.93 30.60 0.18 -1.99 16 3 C -0.13 -3.29 5.35 30.60 0.16 -3.12 16 4 C 0.10 2.73 5.57 86.38 0.48 3.21 16 5 N -0.49 -17.04 3.78 -463.06 -1.75 -18.79 16 6 O -0.33 -9.52 14.28 -38.79 -0.55 -10.07 16 7 C 0.54 24.88 7.33 87.66 0.64 25.52 16 8 O -0.55 -28.40 14.06 -3.05 -0.04 -28.44 16 9 C -0.12 -5.51 3.39 29.85 0.10 -5.41 16 10 C 0.09 4.44 1.97 -12.28 -0.02 4.42 16 11 H 0.02 0.84 7.91 -2.38 -0.02 0.82 16 12 C -0.49 -28.13 7.27 25.60 0.19 -27.94 16 13 H 0.03 1.91 7.82 -2.91 -0.02 1.89 16 14 C 0.03 1.72 5.12 84.65 0.43 2.15 16 15 N -0.89 -47.24 7.99 21.45 0.17 -47.06 16 16 Si 0.93 45.29 29.54 68.60 2.03 47.32 16 17 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 20 C -0.05 -2.47 4.69 -19.87 -0.09 -2.56 16 21 C -0.15 -6.68 9.71 22.27 0.22 -6.47 16 22 C -0.14 -5.18 10.05 22.27 0.22 -4.96 16 23 C -0.15 -5.25 10.05 22.27 0.22 -5.03 16 24 C -0.15 -5.78 10.05 22.27 0.22 -5.56 16 25 C -0.08 -3.78 7.45 22.27 0.17 -3.61 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.27 7.34 -2.39 -0.02 1.25 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.12 2.07 7.84 -2.39 -0.02 2.05 16 34 H 0.06 1.98 7.90 -2.39 -0.02 1.96 16 35 H 0.40 6.00 8.72 -74.06 -0.65 5.36 16 36 H 0.12 6.11 4.70 -2.39 -0.01 6.10 16 37 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.26 13.39 8.31 -92.70 -0.77 12.62 16 39 H 0.10 4.48 8.06 -2.92 -0.02 4.45 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 41 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 42 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 43 H 0.13 6.05 5.18 -2.91 -0.02 6.03 16 Total: -1.00 -68.97 349.74 4.04 -64.93 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.35 Total: 25.43 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 3.84 Total: -33.30 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -1.58 Total: -65.86 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.60 Total: -38.52 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.97 4.04 -64.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904213263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.131 kcal (2) G-P(sol) polarization free energy of solvation -68.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds