Wall clock time and date at job start Tue Mar 31 2020 07:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46693 * 2 1 4 4 H 1.08996 * 109.47614 * 305.00144 * 3 2 1 5 5 C 1.53005 * 109.46987 * 64.99981 * 3 2 1 6 6 C 1.53004 * 109.46991 * 184.99762 * 3 2 1 7 7 H 1.08996 * 109.46853 * 60.00689 * 6 3 2 8 8 N 1.46505 * 109.47098 * 180.02562 * 6 3 2 9 9 C 1.38857 * 120.00165 * 205.00014 * 8 6 3 10 10 C 1.39560 * 119.84253 * 179.97438 * 9 8 6 11 11 C 1.36338 * 120.16196 * 180.02562 * 10 9 8 12 12 C 1.40893 * 119.83790 * 0.25483 * 11 10 9 13 13 C 1.41130 * 120.15985 * 179.71938 * 12 11 10 14 14 H 1.07991 * 120.00521 * 204.60647 * 13 12 11 15 15 C 1.39872 * 119.99873 * 24.61142 * 13 12 11 16 16 N 1.30907 * 119.99581 * 17.97141 * 15 13 12 17 17 Si 1.86793 * 120.00118 * 197.97007 * 15 13 12 18 18 H 1.48500 * 109.47235 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47028 * 120.00378 * 17 15 13 20 20 H 1.48497 * 109.47271 * 240.00064 * 17 15 13 21 21 C 1.40888 * 119.68423 * 359.45181 * 12 11 10 22 22 C 1.36342 * 119.83434 * 0.55073 * 21 12 11 23 23 C 1.50700 * 109.47302 * 300.00082 * 6 3 2 24 24 O 1.20822 * 120.00371 * 239.99842 * 23 6 3 25 25 O 1.34230 * 119.99477 * 60.00050 * 23 6 3 26 26 C 1.45202 * 116.99680 * 180.02562 * 25 23 6 27 27 H 1.08999 * 109.47592 * 299.99659 * 1 2 3 28 28 H 1.09003 * 109.47433 * 60.00257 * 1 2 3 29 29 H 1.09006 * 109.46749 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47184 * 240.00655 * 2 1 3 31 31 H 1.08993 * 109.47249 * 119.99841 * 2 1 3 32 32 H 1.08997 * 109.46778 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47053 * 299.99666 * 5 3 2 34 34 H 1.09006 * 109.46839 * 59.99867 * 5 3 2 35 35 H 0.96999 * 119.99741 * 24.99985 * 8 6 3 36 36 H 1.07994 * 119.92154 * 0.02562 * 10 9 8 37 37 H 1.08004 * 120.08762 * 179.97438 * 11 10 9 38 38 H 0.97000 * 119.99538 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.08554 * 180.26708 * 21 12 11 40 40 H 1.08007 * 119.91985 * 179.72423 * 22 21 12 41 41 H 1.09004 * 109.47115 * 300.00078 * 26 25 23 42 42 H 1.08993 * 109.47292 * 59.99711 * 26 25 23 43 43 H 1.08995 * 109.47251 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6350 2.1266 1.3074 6 6 3.5647 1.4445 -0.1257 7 1 3.8531 0.9573 -1.0571 8 7 4.0531 2.8257 -0.1251 9 6 5.2664 3.1335 -0.7261 10 6 5.7281 4.4505 -0.7241 11 6 6.9182 4.7600 -1.3128 12 6 7.6799 3.7475 -1.9290 13 6 8.9099 4.0613 -2.5456 14 1 9.2964 3.4301 -3.3320 15 6 9.6286 5.1899 -2.1381 16 7 9.3681 5.7502 -0.9840 17 14 10.9602 5.8976 -3.2405 18 1 11.0582 5.0873 -4.4810 19 1 10.6190 7.2997 -3.5913 20 1 12.2616 5.8689 -2.5258 21 6 7.2104 2.4191 -1.9217 22 6 6.0184 2.1242 -1.3292 23 6 4.1657 0.6992 1.0382 24 8 4.9240 1.2639 1.7905 25 8 3.8584 -0.5919 1.2390 26 6 4.4737 -1.2461 2.3800 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.9987 3.1541 1.3076 33 1 0.5487 2.1252 1.3969 34 1 2.0697 1.5875 2.1492 35 1 3.5288 3.5253 0.2953 36 1 5.1413 5.2263 -0.2550 37 1 7.2742 5.7797 -1.3109 38 1 9.8662 6.5332 -0.7016 39 1 7.7911 1.6371 -2.3883 40 1 5.6551 1.1071 -1.3268 41 1 5.5583 -1.2160 2.2747 42 1 4.1831 -0.7301 3.2950 43 1 4.1415 -2.2831 2.4269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905747168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:24 Heat of formation + Delta-G solvation = -69.815618 kcal Electronic energy + Delta-G solvation = -23623.609609 eV Core-core repulsion = 20247.426216 eV Total energy + Delta-G solvation = -3376.183393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54974 -38.11522 -36.91986 -36.16896 -34.35844 -32.75248 -30.32791 -29.47823 -28.43472 -28.13614 -26.53073 -24.44470 -23.64305 -21.58133 -21.00537 -20.22583 -19.49506 -17.37289 -17.12626 -16.80967 -16.32163 -15.92770 -15.31936 -14.79845 -14.66718 -14.20221 -13.92969 -13.70224 -13.34065 -12.89426 -12.72461 -12.63696 -12.32329 -12.10381 -12.04228 -11.90237 -11.80788 -11.65851 -11.36631 -11.11262 -10.90407 -10.85538 -10.76588 -10.62180 -10.53121 -10.36236 -10.11968 -9.66501 -9.30639 -9.26838 -8.62907 -7.48451 -6.65772 -6.43682 -4.04184 2.54422 2.77095 2.97503 3.11360 3.16222 3.21669 3.38984 4.05847 4.10375 4.62710 4.75226 4.80749 4.86783 5.05579 5.16301 5.21386 5.24123 5.39948 5.44190 5.54778 5.57910 5.65236 5.80738 5.84564 5.91070 5.94337 5.98172 6.21870 6.25142 6.29527 6.34042 6.61917 6.81170 7.04137 7.18854 7.29402 7.54138 7.65715 7.77189 8.08239 8.15351 8.32773 8.42845 8.59880 8.78029 9.06192 9.14420 10.37630 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027631 B = 0.003589 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.118372 B = 7800.012216 C = 8134.742035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.092 4.092 4 H 0.091 0.909 5 C -0.152 4.152 6 C 0.180 3.820 7 H 0.110 0.890 8 N -0.729 5.729 9 C 0.089 3.911 10 C -0.154 4.154 11 C -0.124 4.124 12 C 0.079 3.921 13 C -0.466 4.466 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.805 5.805 17 Si 0.903 3.097 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.277 1.277 21 C -0.189 4.189 22 C -0.155 4.155 23 C 0.433 3.567 24 O -0.486 6.486 25 O -0.362 6.362 26 C 0.031 3.969 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.391 0.609 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.276 0.724 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.908 -9.325 3.460 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.111 4.111 4 H 0.109 0.891 5 C -0.209 4.209 6 C 0.069 3.931 7 H 0.127 0.873 8 N -0.365 5.365 9 C -0.007 4.007 10 C -0.175 4.175 11 C -0.144 4.144 12 C 0.076 3.924 13 C -0.497 4.497 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.432 5.432 17 Si 0.728 3.272 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.203 1.203 21 C -0.209 4.209 22 C -0.176 4.176 23 C 0.272 3.728 24 O -0.370 6.370 25 O -0.279 6.279 26 C -0.063 4.063 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.226 0.774 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.523 -9.124 3.815 17.570 hybrid contribution 0.807 0.529 0.140 0.975 sum -13.716 -8.594 3.955 16.662 Atomic orbital electron populations 1.21802 0.95845 1.01447 1.01694 1.21740 0.95596 0.95178 1.03927 1.21379 0.92065 0.97957 0.99677 0.89077 1.21929 1.01634 1.00727 0.96647 1.20314 0.93245 0.85130 0.94422 0.87303 1.43709 1.22739 1.04363 1.65661 1.17271 0.87808 0.93843 1.01786 1.19997 0.98498 0.93160 1.05861 1.20917 0.92639 0.99815 1.01012 1.17504 0.92822 0.90198 0.91896 1.19409 1.03897 1.08278 1.18120 0.90841 1.25820 0.97824 0.96165 0.94328 1.69875 1.37552 1.18648 1.17121 0.86352 0.80297 0.79338 0.81192 1.18602 1.19938 1.20281 1.20533 0.97330 0.96003 1.07064 1.19815 0.97211 0.95483 1.05120 1.25419 0.79673 0.80280 0.87424 1.90682 1.32613 1.68196 1.45480 1.86622 1.66273 1.26809 1.48196 1.23170 0.98755 0.96987 0.87436 0.92712 0.92857 0.92824 0.91448 0.89843 0.92255 0.91730 0.92976 0.77352 0.89410 0.86242 0.91324 0.89082 0.90033 0.92117 0.92464 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.83 16 2 C -0.13 -1.22 4.69 -26.73 -0.13 -1.34 16 3 C -0.09 -1.01 2.38 -90.61 -0.22 -1.23 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 5 C -0.15 -1.62 8.53 37.16 0.32 -1.31 16 6 C 0.18 2.68 2.05 -69.08 -0.14 2.54 16 7 H 0.11 1.64 6.45 -51.93 -0.33 1.30 16 8 N -0.73 -12.94 4.65 -53.15 -0.25 -13.19 16 9 C 0.09 1.98 6.55 -83.69 -0.55 1.43 16 10 C -0.15 -3.67 9.82 -39.77 -0.39 -4.06 16 11 C -0.12 -3.30 8.64 -39.26 -0.34 -3.64 16 12 C 0.08 2.16 5.57 -106.79 -0.60 1.57 16 13 C -0.47 -12.84 9.03 -37.87 -0.34 -13.18 16 14 H 0.07 1.96 7.91 -52.49 -0.41 1.54 16 15 C 0.07 1.94 5.13 -17.33 -0.09 1.85 16 16 N -0.80 -21.75 10.96 55.54 0.61 -21.14 16 17 Si 0.90 19.43 29.60 -169.99 -5.03 14.40 16 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 C -0.19 -4.81 9.74 -39.26 -0.38 -5.20 16 22 C -0.15 -3.59 9.07 -39.77 -0.36 -3.95 16 23 C 0.43 7.12 5.81 36.01 0.21 7.33 16 24 O -0.49 -9.98 16.10 -18.75 -0.30 -10.28 16 25 O -0.36 -4.90 7.57 -39.26 -0.30 -5.19 16 26 C 0.03 0.34 10.56 101.05 1.07 1.41 16 27 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.86 5.68 -51.93 -0.29 0.57 16 32 H 0.06 0.66 6.50 -51.93 -0.34 0.32 16 33 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 34 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 35 H 0.39 6.32 6.86 -40.82 -0.28 6.04 16 36 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.12 3.29 6.16 -52.48 -0.32 2.96 16 38 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 39 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.08 1.70 6.14 -52.48 -0.32 1.38 16 41 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 42 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -31.03 344.86 -7.95 -38.98 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.30 Total: 9.83 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.58 Total: -18.60 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.36 Total: -34.33 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.60 Total: -15.48 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.03 -7.95 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905747168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.834 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds