Wall clock time and date at job start Tue Mar 31 2020 07:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46693 * 2 1 4 4 H 1.08996 * 109.47614 * 305.00144 * 3 2 1 5 5 C 1.53005 * 109.46987 * 64.99981 * 3 2 1 6 6 C 1.53004 * 109.46991 * 184.99762 * 3 2 1 7 7 H 1.08996 * 109.46853 * 60.00689 * 6 3 2 8 8 N 1.46505 * 109.47098 * 180.02562 * 6 3 2 9 9 C 1.38857 * 120.00165 * 205.00014 * 8 6 3 10 10 C 1.39560 * 119.84253 * 179.97438 * 9 8 6 11 11 C 1.36338 * 120.16196 * 180.02562 * 10 9 8 12 12 C 1.40893 * 119.83790 * 0.25483 * 11 10 9 13 13 C 1.41130 * 120.15985 * 179.71938 * 12 11 10 14 14 H 1.07991 * 120.00521 * 204.60647 * 13 12 11 15 15 C 1.39872 * 119.99873 * 24.61142 * 13 12 11 16 16 N 1.30907 * 119.99581 * 17.97141 * 15 13 12 17 17 Si 1.86793 * 120.00118 * 197.97007 * 15 13 12 18 18 H 1.48500 * 109.47235 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47028 * 120.00378 * 17 15 13 20 20 H 1.48497 * 109.47271 * 240.00064 * 17 15 13 21 21 C 1.40888 * 119.68423 * 359.45181 * 12 11 10 22 22 C 1.36342 * 119.83434 * 0.55073 * 21 12 11 23 23 C 1.50700 * 109.47302 * 300.00082 * 6 3 2 24 24 O 1.20822 * 120.00371 * 239.99842 * 23 6 3 25 25 O 1.34230 * 119.99477 * 60.00050 * 23 6 3 26 26 C 1.45202 * 116.99680 * 180.02562 * 25 23 6 27 27 H 1.08999 * 109.47592 * 299.99659 * 1 2 3 28 28 H 1.09003 * 109.47433 * 60.00257 * 1 2 3 29 29 H 1.09006 * 109.46749 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47184 * 240.00655 * 2 1 3 31 31 H 1.08993 * 109.47249 * 119.99841 * 2 1 3 32 32 H 1.08997 * 109.46778 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47053 * 299.99666 * 5 3 2 34 34 H 1.09006 * 109.46839 * 59.99867 * 5 3 2 35 35 H 0.96999 * 119.99741 * 24.99985 * 8 6 3 36 36 H 1.07994 * 119.92154 * 0.02562 * 10 9 8 37 37 H 1.08004 * 120.08762 * 179.97438 * 11 10 9 38 38 H 0.97000 * 119.99538 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.08554 * 180.26708 * 21 12 11 40 40 H 1.08007 * 119.91985 * 179.72423 * 22 21 12 41 41 H 1.09004 * 109.47115 * 300.00078 * 26 25 23 42 42 H 1.08993 * 109.47292 * 59.99711 * 26 25 23 43 43 H 1.08995 * 109.47251 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6350 2.1266 1.3074 6 6 3.5647 1.4445 -0.1257 7 1 3.8531 0.9573 -1.0571 8 7 4.0531 2.8257 -0.1251 9 6 5.2664 3.1335 -0.7261 10 6 5.7281 4.4505 -0.7241 11 6 6.9182 4.7600 -1.3128 12 6 7.6799 3.7475 -1.9290 13 6 8.9099 4.0613 -2.5456 14 1 9.2964 3.4301 -3.3320 15 6 9.6286 5.1899 -2.1381 16 7 9.3681 5.7502 -0.9840 17 14 10.9602 5.8976 -3.2405 18 1 11.0582 5.0873 -4.4810 19 1 10.6190 7.2997 -3.5913 20 1 12.2616 5.8689 -2.5258 21 6 7.2104 2.4191 -1.9217 22 6 6.0184 2.1242 -1.3292 23 6 4.1657 0.6992 1.0382 24 8 4.9240 1.2639 1.7905 25 8 3.8584 -0.5919 1.2390 26 6 4.4737 -1.2461 2.3800 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.9987 3.1541 1.3076 33 1 0.5487 2.1252 1.3969 34 1 2.0697 1.5875 2.1492 35 1 3.5288 3.5253 0.2953 36 1 5.1413 5.2263 -0.2550 37 1 7.2742 5.7797 -1.3109 38 1 9.8662 6.5332 -0.7016 39 1 7.7911 1.6371 -2.3883 40 1 5.6551 1.1071 -1.3268 41 1 5.5583 -1.2160 2.2747 42 1 4.1831 -0.7301 3.2950 43 1 4.1415 -2.2831 2.4269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905747168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:23 Heat of formation + Delta-G solvation = -86.651159 kcal Electronic energy + Delta-G solvation = -23624.339653 eV Core-core repulsion = 20247.426216 eV Total energy + Delta-G solvation = -3376.913437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82171 -39.78250 -38.20851 -37.44188 -35.98524 -34.41191 -31.79635 -31.14936 -29.82821 -29.37570 -27.67026 -26.13489 -24.71949 -23.08720 -22.62744 -21.75909 -20.69971 -19.21005 -18.47063 -18.20557 -17.68379 -17.27143 -17.01891 -16.23057 -15.68698 -15.59373 -15.25094 -14.81685 -14.64531 -14.37704 -14.32086 -13.92862 -13.85277 -13.67305 -13.35880 -13.11770 -12.92614 -12.78391 -12.73306 -12.67868 -12.51925 -12.32078 -11.91980 -11.75759 -11.64760 -11.54504 -11.46932 -11.25400 -11.20651 -11.06532 -10.42783 -9.44200 -8.58861 -8.27150 -6.05339 1.05001 1.13545 1.25253 1.39727 1.51135 1.55201 1.80576 2.26675 2.71688 2.82589 3.62130 3.77405 3.87021 3.90033 4.07178 4.29862 4.31379 4.33032 4.41142 4.45591 4.57416 4.62829 4.67856 4.77723 4.81008 4.95098 5.03408 5.10208 5.14638 5.17565 5.26629 5.32776 5.36233 5.37993 5.52740 5.63412 5.66279 5.70851 5.86528 6.15140 6.35286 6.56685 6.75545 6.87065 7.02239 7.05538 7.20365 8.46201 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027631 B = 0.003589 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.118372 B = 7800.012216 C = 8134.742035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.082 4.082 4 H 0.105 0.895 5 C -0.151 4.151 6 C 0.173 3.827 7 H 0.113 0.887 8 N -0.723 5.723 9 C 0.111 3.889 10 C -0.166 4.166 11 C -0.142 4.142 12 C 0.041 3.959 13 C -0.505 4.505 14 H 0.069 0.931 15 C 0.031 3.969 16 N -0.841 5.841 17 Si 0.980 3.020 18 H -0.259 1.259 19 H -0.265 1.265 20 H -0.270 1.270 21 C -0.200 4.200 22 C -0.163 4.163 23 C 0.438 3.562 24 O -0.534 6.534 25 O -0.352 6.352 26 C 0.024 3.976 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.037 0.963 35 H 0.401 0.599 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.283 0.717 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.852 -10.434 3.352 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.101 4.101 4 H 0.123 0.877 5 C -0.208 4.208 6 C 0.064 3.936 7 H 0.130 0.870 8 N -0.358 5.358 9 C 0.012 3.988 10 C -0.188 4.188 11 C -0.162 4.162 12 C 0.038 3.962 13 C -0.536 4.536 14 H 0.087 0.913 15 C -0.181 4.181 16 N -0.469 5.469 17 Si 0.801 3.199 18 H -0.183 1.183 19 H -0.190 1.190 20 H -0.195 1.195 21 C -0.220 4.220 22 C -0.185 4.185 23 C 0.280 3.720 24 O -0.422 6.422 25 O -0.267 6.267 26 C -0.069 4.069 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.237 0.763 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.529 -10.277 3.720 19.816 hybrid contribution 1.224 0.699 0.293 1.440 sum -15.305 -9.579 4.013 18.496 Atomic orbital electron populations 1.21775 0.94180 1.02272 1.02211 1.21719 0.96956 0.93756 1.03709 1.21400 0.88821 0.99465 1.00437 0.87679 1.21934 1.03164 0.99941 0.95765 1.20657 0.95811 0.83239 0.93941 0.86968 1.43722 1.21069 1.06284 1.64676 1.17356 0.88677 0.92990 0.99728 1.20216 0.98075 0.94674 1.05850 1.20869 0.93910 0.99028 1.02375 1.17824 0.93655 0.91300 0.93426 1.19634 1.04880 1.09980 1.19077 0.91255 1.26671 1.00098 0.95925 0.95438 1.69938 1.39076 1.19297 1.18585 0.85203 0.77140 0.78595 0.78957 1.18271 1.18952 1.19475 1.20735 0.98360 0.95545 1.07379 1.20041 0.96684 0.96947 1.04808 1.25553 0.78510 0.80992 0.86958 1.90676 1.34846 1.69336 1.47342 1.86617 1.65837 1.25299 1.48961 1.23471 0.98024 0.98920 0.86520 0.92285 0.92244 0.91934 0.91146 0.90585 0.92931 0.89275 0.94402 0.76265 0.87291 0.87967 0.90687 0.88629 0.87609 0.93498 0.92411 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 71.98 0.70 -1.09 16 2 C -0.12 -1.99 4.69 30.59 0.14 -1.84 16 3 C -0.08 -1.59 2.38 -10.79 -0.03 -1.61 16 4 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 5 C -0.15 -2.84 8.53 71.98 0.61 -2.23 16 6 C 0.17 4.83 2.05 44.25 0.09 4.92 16 7 H 0.11 3.11 6.45 -2.39 -0.02 3.10 16 8 N -0.72 -24.59 4.65 -322.08 -1.50 -26.09 16 9 C 0.11 4.89 6.55 38.67 0.25 5.14 16 10 C -0.17 -8.02 9.82 22.15 0.22 -7.80 16 11 C -0.14 -7.83 8.64 22.48 0.19 -7.64 16 12 C 0.04 2.33 5.57 -21.27 -0.12 2.21 16 13 C -0.50 -28.92 9.03 23.38 0.21 -28.71 16 14 H 0.07 3.85 7.91 -2.92 -0.02 3.83 16 15 C 0.03 1.65 5.13 85.23 0.44 2.08 16 16 N -0.84 -46.94 10.96 21.82 0.24 -46.71 16 17 Si 0.98 40.67 29.60 68.60 2.03 42.70 16 18 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 21 C -0.20 -10.42 9.74 22.48 0.22 -10.20 16 22 C -0.16 -7.52 9.07 22.15 0.20 -7.32 16 23 C 0.44 13.83 5.81 71.24 0.41 14.24 16 24 O -0.53 -21.76 16.10 21.98 0.35 -21.41 16 25 O -0.35 -8.80 7.57 -51.42 -0.39 -9.19 16 26 C 0.02 0.50 10.56 113.37 1.20 1.69 16 27 H 0.06 0.67 6.56 -2.39 -0.02 0.66 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.35 5.68 -2.39 -0.01 1.34 16 32 H 0.05 1.06 6.50 -2.39 -0.02 1.04 16 33 H 0.09 1.25 6.56 -2.39 -0.02 1.23 16 34 H 0.04 0.82 7.22 -2.38 -0.02 0.81 16 35 H 0.40 12.27 6.86 -92.71 -0.64 11.63 16 36 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 37 H 0.10 5.90 6.16 -2.91 -0.02 5.88 16 38 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 39 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.11 4.28 6.14 -2.91 -0.02 4.26 16 41 H 0.05 1.11 8.13 -2.38 -0.02 1.09 16 42 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 43 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -69.61 344.86 5.86 -63.75 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.38 Total: 35.10 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 4.74 Total: -38.17 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.26 Total: -72.79 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.04 Total: -30.60 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -69.61 5.86 -63.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905747168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.898 kcal (2) G-P(sol) polarization free energy of solvation -69.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds