Wall clock time and date at job start Tue Mar 31 2020 07:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47345 * 305.22273 * 3 2 1 5 5 C 1.52995 * 109.47065 * 65.22180 * 3 2 1 6 6 C 1.52998 * 109.47313 * 185.22242 * 3 2 1 7 7 H 1.08998 * 109.47335 * 57.83736 * 6 3 2 8 8 N 1.46507 * 109.47150 * 297.84246 * 6 3 2 9 9 C 1.38848 * 120.00164 * 155.00214 * 8 6 3 10 10 C 1.39574 * 119.84356 * 180.02562 * 9 8 6 11 11 C 1.36338 * 120.16297 * 179.97438 * 10 9 8 12 12 C 1.40895 * 119.83586 * 359.97438 * 11 10 9 13 13 C 1.41136 * 120.15305 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99164 * 154.51011 * 13 12 11 15 15 C 1.39858 * 120.00233 * 334.50870 * 13 12 11 16 16 N 1.30898 * 120.00206 * 343.84525 * 15 13 12 17 17 Si 1.86802 * 119.99939 * 163.83550 * 15 13 12 18 18 H 1.48501 * 109.46919 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46852 * 120.00425 * 17 15 13 20 20 H 1.48494 * 109.47410 * 240.00590 * 17 15 13 21 21 C 1.40887 * 119.68761 * 0.28025 * 12 11 10 22 22 C 1.36341 * 119.83716 * 359.43597 * 21 12 11 23 23 C 1.50695 * 109.47613 * 177.83984 * 6 3 2 24 24 O 1.20827 * 119.99979 * 92.73421 * 23 6 3 25 25 O 1.34228 * 120.00361 * 272.74523 * 23 6 3 26 26 C 1.45196 * 117.00280 * 179.97438 * 25 23 6 27 27 H 1.08997 * 109.47572 * 299.99536 * 1 2 3 28 28 H 1.09003 * 109.47014 * 60.00343 * 1 2 3 29 29 H 1.09007 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47535 * 239.99742 * 2 1 3 31 31 H 1.08998 * 109.47397 * 119.99921 * 2 1 3 32 32 H 1.09007 * 109.47132 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.47335 * 300.00336 * 5 3 2 34 34 H 1.09002 * 109.47627 * 60.00107 * 5 3 2 35 35 H 0.96995 * 119.99457 * 334.99225 * 8 6 3 36 36 H 1.07996 * 119.91692 * 359.94608 * 10 9 8 37 37 H 1.07993 * 120.08122 * 179.97438 * 11 10 9 38 38 H 0.97003 * 120.00227 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.08115 * 179.69757 * 21 12 11 40 40 H 1.07996 * 119.92178 * 180.28322 * 22 21 12 41 41 H 1.08999 * 109.47296 * 60.00263 * 26 25 23 42 42 H 1.09002 * 109.47081 * 180.02562 * 26 25 23 43 43 H 1.08998 * 109.47340 * 299.99802 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6022 1.9826 -0.8395 5 6 1.6399 2.1248 1.3097 6 6 3.5643 1.4446 -0.1313 7 1 3.8509 0.9247 -1.0454 8 7 4.1548 0.7633 1.0235 9 6 5.4101 0.1793 0.9179 10 6 5.9693 -0.4693 2.0200 11 6 7.2012 -1.0454 1.9234 12 6 7.9097 -0.9853 0.7070 13 6 9.1856 -1.5790 0.5997 14 1 9.5507 -1.9036 -0.3635 15 6 9.9771 -1.7467 1.7405 16 7 9.6949 -1.0876 2.8356 17 14 11.4368 -2.9117 1.7015 18 1 11.5407 -3.5301 0.3554 19 1 12.6809 -2.1563 1.9962 20 1 11.2495 -3.9744 2.7217 21 6 7.3413 -0.3243 -0.3997 22 6 6.1060 0.2423 -0.2903 23 6 4.0620 2.8659 -0.1847 24 8 4.3982 3.4269 0.8313 25 8 4.1318 3.5090 -1.3608 26 6 4.6202 4.8761 -1.3367 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0029 3.1527 1.3095 33 1 0.5540 2.1233 1.4032 34 1 2.0776 1.5848 2.1493 35 1 3.6689 0.7205 1.8619 36 1 5.4251 -0.5145 2.9517 37 1 7.6329 -1.5465 2.7771 38 1 10.2436 -1.2042 3.6270 39 1 7.8809 -0.2702 -1.3337 40 1 5.6670 0.7454 -1.1391 41 1 5.6325 4.8933 -0.9332 42 1 4.6257 5.2778 -2.3500 43 1 3.9684 5.4838 -0.7090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905747170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:29 Heat of formation + Delta-G solvation = -73.887563 kcal Electronic energy + Delta-G solvation = -23588.030560 eV Core-core repulsion = 20211.670594 eV Total energy + Delta-G solvation = -3376.359966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.48183 -38.26553 -37.05539 -35.99703 -34.29746 -32.68318 -30.46466 -29.50424 -28.42302 -28.12520 -26.50839 -24.34768 -24.04687 -21.31441 -20.86759 -20.50389 -19.24916 -17.48194 -17.12820 -16.63602 -16.51707 -15.96532 -15.31779 -15.00421 -14.47559 -14.27625 -13.78190 -13.70094 -13.29874 -12.98846 -12.80756 -12.59765 -12.25280 -12.07122 -12.02730 -11.90962 -11.82814 -11.61212 -11.37369 -11.11719 -10.95649 -10.86427 -10.79645 -10.59591 -10.58162 -10.54669 -10.10920 -9.67395 -9.31455 -9.28034 -8.63863 -7.51189 -6.65796 -6.45083 -4.07119 2.48317 2.77752 2.97046 3.08916 3.15301 3.20632 3.36153 4.04926 4.16185 4.63273 4.71854 4.79102 4.81801 5.15863 5.18240 5.22067 5.26720 5.36763 5.43911 5.55454 5.58456 5.65665 5.80119 5.82511 5.92596 5.96298 6.00300 6.22598 6.26491 6.28865 6.31811 6.59930 6.79571 7.02771 7.16398 7.28012 7.52010 7.64348 7.75618 8.04222 8.13526 8.31261 8.40642 8.58530 8.76245 9.04496 9.12097 10.36916 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019854 B = 0.003971 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.957367 B = 7049.588005 C = 7783.545769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.089 4.089 4 H 0.085 0.915 5 C -0.153 4.153 6 C 0.180 3.820 7 H 0.106 0.894 8 N -0.726 5.726 9 C 0.084 3.916 10 C -0.153 4.153 11 C -0.122 4.122 12 C 0.078 3.922 13 C -0.465 4.465 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.807 5.807 17 Si 0.904 3.096 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.274 1.274 21 C -0.188 4.188 22 C -0.159 4.159 23 C 0.439 3.561 24 O -0.495 6.495 25 O -0.366 6.366 26 C 0.035 3.965 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.393 0.607 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.276 0.724 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 5.149 -5.176 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.108 4.108 4 H 0.103 0.897 5 C -0.211 4.211 6 C 0.069 3.931 7 H 0.124 0.876 8 N -0.363 5.363 9 C -0.012 4.012 10 C -0.175 4.175 11 C -0.142 4.142 12 C 0.075 3.925 13 C -0.496 4.496 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.435 5.435 17 Si 0.729 3.271 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.199 1.199 21 C -0.208 4.208 22 C -0.180 4.180 23 C 0.278 3.722 24 O -0.380 6.380 25 O -0.283 6.283 26 C -0.060 4.060 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.481 5.426 -4.793 16.190 hybrid contribution 0.843 -0.021 0.474 0.967 sum -13.639 5.405 -4.319 15.293 Atomic orbital electron populations 1.21827 0.95844 1.01612 1.01691 1.21501 0.95412 0.94880 1.03340 1.21349 0.91747 0.98149 0.99597 0.89665 1.21930 1.01349 1.00794 0.96986 1.20247 0.93129 0.85712 0.93969 0.87638 1.43732 1.18868 1.61478 1.12184 1.17333 0.86528 1.02380 0.94976 1.20013 0.97566 1.04429 0.95488 1.20949 0.92431 1.01498 0.99351 1.17524 0.92917 0.90946 0.91096 1.19418 1.00077 1.35702 0.94450 0.90845 1.25808 0.98744 0.94588 0.95003 1.69853 1.37273 1.33629 1.02711 0.86339 0.80775 0.80665 0.79326 1.18613 1.20266 1.19943 1.20555 0.96312 1.04574 0.99342 1.19886 0.96893 1.06339 0.94916 1.25425 0.74995 0.90521 0.81222 1.90623 1.44072 1.67687 1.35616 1.86538 1.77622 1.28384 1.35731 1.23175 0.99796 0.79929 1.03051 0.92593 0.92877 0.92696 0.91403 0.91001 0.92503 0.91960 0.92056 0.77174 0.89384 0.86144 0.91323 0.89024 0.89620 0.91976 0.88543 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.15 0.36 -0.92 16 2 C -0.11 -1.18 5.19 -26.73 -0.14 -1.31 16 3 C -0.09 -1.01 2.21 -90.62 -0.20 -1.21 16 4 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 5 C -0.15 -1.71 8.47 37.16 0.31 -1.40 16 6 C 0.18 2.69 1.90 -69.08 -0.13 2.56 16 7 H 0.11 1.58 6.45 -51.93 -0.33 1.25 16 8 N -0.73 -12.64 4.21 -53.15 -0.22 -12.87 16 9 C 0.08 1.83 6.64 -83.69 -0.56 1.27 16 10 C -0.15 -3.60 9.82 -39.77 -0.39 -3.99 16 11 C -0.12 -3.22 8.63 -39.26 -0.34 -3.56 16 12 C 0.08 2.12 5.57 -106.79 -0.59 1.52 16 13 C -0.47 -12.69 9.04 -37.88 -0.34 -13.03 16 14 H 0.07 1.93 7.90 -52.49 -0.41 1.52 16 15 C 0.07 1.91 5.16 -17.34 -0.09 1.82 16 16 N -0.81 -21.64 10.91 55.54 0.61 -21.03 16 17 Si 0.90 19.30 29.59 -169.99 -5.03 14.28 16 18 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 22 C -0.16 -3.59 9.07 -39.77 -0.36 -3.96 16 23 C 0.44 7.34 6.12 36.00 0.22 7.56 16 24 O -0.49 -9.73 15.63 -18.75 -0.29 -10.02 16 25 O -0.37 -5.45 10.56 -39.25 -0.41 -5.86 16 26 C 0.03 0.41 10.56 101.05 1.07 1.48 16 27 H 0.06 0.45 6.57 -51.93 -0.34 0.10 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.82 7.76 -51.93 -0.40 0.42 16 32 H 0.06 0.72 6.80 -51.93 -0.35 0.37 16 33 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 34 H 0.06 0.72 6.41 -51.93 -0.33 0.38 16 35 H 0.39 6.34 6.67 -40.82 -0.27 6.07 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.12 3.28 6.16 -52.49 -0.32 2.96 16 38 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.09 1.75 6.14 -52.49 -0.32 1.43 16 41 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -30.29 348.82 -8.04 -38.33 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.38 Total: 10.15 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -1.56 Total: -18.22 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.38 Total: -33.90 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.71 Total: -15.89 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.29 -8.04 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905747170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.560 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds