Wall clock time and date at job start Tue Mar 31 2020 07:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47345 * 305.22273 * 3 2 1 5 5 C 1.52995 * 109.47065 * 65.22180 * 3 2 1 6 6 C 1.52998 * 109.47313 * 185.22242 * 3 2 1 7 7 H 1.08998 * 109.47335 * 57.83736 * 6 3 2 8 8 N 1.46507 * 109.47150 * 297.84246 * 6 3 2 9 9 C 1.38848 * 120.00164 * 155.00214 * 8 6 3 10 10 C 1.39574 * 119.84356 * 180.02562 * 9 8 6 11 11 C 1.36338 * 120.16297 * 179.97438 * 10 9 8 12 12 C 1.40895 * 119.83586 * 359.97438 * 11 10 9 13 13 C 1.41136 * 120.15305 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99164 * 154.51011 * 13 12 11 15 15 C 1.39858 * 120.00233 * 334.50870 * 13 12 11 16 16 N 1.30898 * 120.00206 * 343.84525 * 15 13 12 17 17 Si 1.86802 * 119.99939 * 163.83550 * 15 13 12 18 18 H 1.48501 * 109.46919 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46852 * 120.00425 * 17 15 13 20 20 H 1.48494 * 109.47410 * 240.00590 * 17 15 13 21 21 C 1.40887 * 119.68761 * 0.28025 * 12 11 10 22 22 C 1.36341 * 119.83716 * 359.43597 * 21 12 11 23 23 C 1.50695 * 109.47613 * 177.83984 * 6 3 2 24 24 O 1.20827 * 119.99979 * 92.73421 * 23 6 3 25 25 O 1.34228 * 120.00361 * 272.74523 * 23 6 3 26 26 C 1.45196 * 117.00280 * 179.97438 * 25 23 6 27 27 H 1.08997 * 109.47572 * 299.99536 * 1 2 3 28 28 H 1.09003 * 109.47014 * 60.00343 * 1 2 3 29 29 H 1.09007 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47535 * 239.99742 * 2 1 3 31 31 H 1.08998 * 109.47397 * 119.99921 * 2 1 3 32 32 H 1.09007 * 109.47132 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.47335 * 300.00336 * 5 3 2 34 34 H 1.09002 * 109.47627 * 60.00107 * 5 3 2 35 35 H 0.96995 * 119.99457 * 334.99225 * 8 6 3 36 36 H 1.07996 * 119.91692 * 359.94608 * 10 9 8 37 37 H 1.07993 * 120.08122 * 179.97438 * 11 10 9 38 38 H 0.97003 * 120.00227 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.08115 * 179.69757 * 21 12 11 40 40 H 1.07996 * 119.92178 * 180.28322 * 22 21 12 41 41 H 1.08999 * 109.47296 * 60.00263 * 26 25 23 42 42 H 1.09002 * 109.47081 * 180.02562 * 26 25 23 43 43 H 1.08998 * 109.47340 * 299.99802 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6022 1.9826 -0.8395 5 6 1.6399 2.1248 1.3097 6 6 3.5643 1.4446 -0.1313 7 1 3.8509 0.9247 -1.0454 8 7 4.1548 0.7633 1.0235 9 6 5.4101 0.1793 0.9179 10 6 5.9693 -0.4693 2.0200 11 6 7.2012 -1.0454 1.9234 12 6 7.9097 -0.9853 0.7070 13 6 9.1856 -1.5790 0.5997 14 1 9.5507 -1.9036 -0.3635 15 6 9.9771 -1.7467 1.7405 16 7 9.6949 -1.0876 2.8356 17 14 11.4368 -2.9117 1.7015 18 1 11.5407 -3.5301 0.3554 19 1 12.6809 -2.1563 1.9962 20 1 11.2495 -3.9744 2.7217 21 6 7.3413 -0.3243 -0.3997 22 6 6.1060 0.2423 -0.2903 23 6 4.0620 2.8659 -0.1847 24 8 4.3982 3.4269 0.8313 25 8 4.1318 3.5090 -1.3608 26 6 4.6202 4.8761 -1.3367 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0029 3.1527 1.3095 33 1 0.5540 2.1233 1.4032 34 1 2.0776 1.5848 2.1493 35 1 3.6689 0.7205 1.8619 36 1 5.4251 -0.5145 2.9517 37 1 7.6329 -1.5465 2.7771 38 1 10.2436 -1.2042 3.6270 39 1 7.8809 -0.2702 -1.3337 40 1 5.6670 0.7454 -1.1391 41 1 5.6325 4.8933 -0.9332 42 1 4.6257 5.2778 -2.3500 43 1 3.9684 5.4838 -0.7090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905747170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:29 Heat of formation + Delta-G solvation = -89.769251 kcal Electronic energy + Delta-G solvation = -23588.719242 eV Core-core repulsion = 20211.670594 eV Total energy + Delta-G solvation = -3377.048647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77422 -39.84506 -38.44360 -37.26499 -35.94036 -34.30885 -31.87287 -31.17913 -29.94635 -29.31034 -27.68580 -26.06998 -25.04783 -23.05602 -22.42418 -21.86292 -20.48328 -19.20031 -18.63413 -18.09684 -17.83042 -17.23954 -17.04269 -16.26399 -15.75621 -15.56077 -15.27368 -14.80035 -14.60896 -14.45425 -14.11855 -14.07872 -13.88981 -13.66982 -13.30513 -13.14256 -12.89656 -12.82213 -12.76667 -12.70174 -12.43872 -12.31556 -12.04848 -11.77558 -11.72586 -11.56257 -11.47357 -11.41734 -11.19876 -11.04878 -10.40168 -9.44085 -8.56981 -8.26370 -6.06164 1.04363 1.11407 1.21386 1.40099 1.51651 1.55056 1.79692 2.26858 2.74883 2.83309 3.61949 3.74006 3.84482 3.85889 4.10097 4.27503 4.30122 4.31669 4.40682 4.45818 4.53260 4.61573 4.66728 4.71125 4.77168 4.95400 5.00295 5.10912 5.11979 5.16732 5.26522 5.28643 5.36623 5.38220 5.46382 5.56178 5.66902 5.71234 5.87093 6.15726 6.35818 6.56227 6.74935 6.84692 7.00786 7.06124 7.20338 8.47166 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019854 B = 0.003971 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.957367 B = 7049.588005 C = 7783.545769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.080 4.080 4 H 0.106 0.894 5 C -0.151 4.151 6 C 0.175 3.825 7 H 0.111 0.889 8 N -0.718 5.718 9 C 0.107 3.893 10 C -0.166 4.166 11 C -0.140 4.140 12 C 0.040 3.960 13 C -0.503 4.503 14 H 0.069 0.931 15 C 0.031 3.969 16 N -0.843 5.843 17 Si 0.979 3.021 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.266 1.266 21 C -0.196 4.196 22 C -0.165 4.165 23 C 0.439 3.561 24 O -0.530 6.530 25 O -0.366 6.366 26 C 0.028 3.972 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.400 0.600 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.282 0.718 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.046 0.954 42 H 0.135 0.865 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.493 5.535 -6.221 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.098 4.098 4 H 0.124 0.876 5 C -0.208 4.208 6 C 0.065 3.935 7 H 0.128 0.872 8 N -0.354 5.354 9 C 0.008 3.992 10 C -0.187 4.187 11 C -0.160 4.160 12 C 0.037 3.963 13 C -0.535 4.535 14 H 0.088 0.912 15 C -0.181 4.181 16 N -0.472 5.472 17 Si 0.800 3.200 18 H -0.183 1.183 19 H -0.195 1.195 20 H -0.190 1.190 21 C -0.217 4.217 22 C -0.187 4.187 23 C 0.281 3.719 24 O -0.418 6.418 25 O -0.281 6.281 26 C -0.066 4.066 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.237 0.763 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.064 0.936 42 H 0.153 0.847 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.304 5.837 -5.863 18.283 hybrid contribution 1.209 0.021 0.725 1.410 sum -15.095 5.857 -5.138 16.987 Atomic orbital electron populations 1.21797 0.94012 1.02231 1.02530 1.21481 0.96963 0.93823 1.02658 1.21375 0.88754 0.99205 1.00504 0.87564 1.21913 1.02902 0.99458 0.96516 1.20571 0.95486 0.84539 0.92858 0.87184 1.43731 1.17229 1.60833 1.13596 1.17408 0.87558 1.00231 0.93975 1.20208 0.97051 1.04495 0.96984 1.20887 0.93679 1.02686 0.98779 1.17840 0.93695 0.92547 0.92193 1.19643 1.01017 1.37724 0.95069 0.91239 1.26638 1.01525 0.95688 0.94226 1.69920 1.38842 1.34927 1.03471 0.85213 0.76985 0.78322 0.79451 1.18268 1.19511 1.19035 1.20752 0.97326 1.04503 0.99083 1.20106 0.96303 1.06166 0.96115 1.25620 0.74125 0.91007 0.81182 1.90617 1.45781 1.68641 1.36810 1.86519 1.77275 1.29795 1.34550 1.23481 0.98898 0.78576 1.05617 0.92021 0.91749 0.92281 0.91561 0.92284 0.94198 0.89457 0.92932 0.76268 0.87455 0.87973 0.90748 0.88503 0.87113 0.93559 0.84721 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 71.98 0.70 -1.31 16 2 C -0.11 -2.01 5.19 30.59 0.16 -1.85 16 3 C -0.08 -1.57 2.21 -10.80 -0.02 -1.59 16 4 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 5 C -0.15 -3.01 8.47 71.98 0.61 -2.40 16 6 C 0.18 4.87 1.90 44.24 0.08 4.96 16 7 H 0.11 3.02 6.45 -2.39 -0.02 3.00 16 8 N -0.72 -24.02 4.21 -322.08 -1.36 -25.38 16 9 C 0.11 4.58 6.64 38.68 0.26 4.84 16 10 C -0.17 -7.85 9.82 22.15 0.22 -7.63 16 11 C -0.14 -7.64 8.63 22.48 0.19 -7.45 16 12 C 0.04 2.25 5.57 -21.27 -0.12 2.13 16 13 C -0.50 -28.48 9.04 23.37 0.21 -28.27 16 14 H 0.07 3.81 7.90 -2.91 -0.02 3.79 16 15 C 0.03 1.64 5.16 85.22 0.44 2.08 16 16 N -0.84 -46.69 10.91 21.81 0.24 -46.45 16 17 Si 0.98 40.38 29.59 68.60 2.03 42.41 16 18 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 20 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 21 C -0.20 -9.99 9.74 22.48 0.22 -9.77 16 22 C -0.16 -7.39 9.07 22.15 0.20 -7.19 16 23 C 0.44 13.98 6.12 71.23 0.44 14.42 16 24 O -0.53 -20.44 15.63 21.96 0.34 -20.09 16 25 O -0.37 -10.07 10.56 -51.40 -0.54 -10.61 16 26 C 0.03 0.61 10.56 113.37 1.20 1.80 16 27 H 0.06 0.77 6.57 -2.39 -0.02 0.75 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.22 7.76 -2.39 -0.02 1.20 16 32 H 0.04 0.94 6.80 -2.38 -0.02 0.92 16 33 H 0.09 1.30 6.57 -2.39 -0.02 1.29 16 34 H 0.05 1.13 6.41 -2.39 -0.02 1.12 16 35 H 0.40 12.37 6.67 -92.71 -0.62 11.76 16 36 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.10 5.85 6.16 -2.91 -0.02 5.83 16 38 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 39 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 40 H 0.11 4.33 6.14 -2.91 -0.02 4.31 16 41 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 42 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 Total: -1.00 -67.47 348.82 5.88 -61.58 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.39 Total: 35.76 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 4.78 Total: -37.22 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.12 Total: -71.83 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.20 Total: -30.71 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -67.47 5.88 -61.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905747170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.189 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds