Wall clock time and date at job start Tue Mar 31 2020 07:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50703 * 119.99765 * 2 1 4 4 H 1.09002 * 109.47083 * 359.97438 * 3 2 1 5 5 C 1.52993 * 109.46941 * 239.99679 * 3 2 1 6 6 C 1.52998 * 109.47227 * 65.00352 * 5 3 2 7 7 C 1.53000 * 109.46801 * 119.99713 * 3 2 1 8 8 C 1.50703 * 109.46912 * 184.99967 * 7 3 2 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99832 * 359.97438 * 10 8 7 12 12 C 1.50703 * 109.47045 * 90.00120 * 11 10 8 13 13 H 1.07996 * 119.99684 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99744 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99822 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99722 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47185 * 59.99950 * 16 14 12 18 18 H 1.48497 * 109.47225 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47338 * 300.00411 * 16 14 12 20 20 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 21 21 C 1.50699 * 109.47398 * 89.99557 * 20 10 8 22 22 C 1.34513 * 125.78792 * 89.99524 * 21 20 10 23 23 C 1.41388 * 106.83927 * 180.02562 * 22 21 20 24 24 C 1.34509 * 106.84236 * 0.02562 * 23 22 21 25 25 O 1.34301 * 125.79045 * 269.69722 * 21 20 10 26 26 H 1.07996 * 120.00074 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99628 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00074 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46975 * 185.00198 * 5 3 2 30 30 H 1.08997 * 109.47674 * 305.00137 * 5 3 2 31 31 H 1.09001 * 109.47528 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.47017 * 299.99820 * 6 5 3 33 33 H 1.09004 * 109.47339 * 59.99924 * 6 5 3 34 34 H 1.09002 * 109.47398 * 305.00045 * 7 3 2 35 35 H 1.09001 * 109.47194 * 65.00225 * 7 3 2 36 36 H 1.08997 * 109.47024 * 210.00620 * 11 10 8 37 37 H 1.09000 * 109.46875 * 330.00379 * 11 10 8 38 38 H 0.97008 * 119.99205 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.47082 * 209.99555 * 20 10 8 40 40 H 1.09004 * 109.46754 * 329.99821 * 20 10 8 41 41 H 1.08000 * 126.58057 * 359.97438 * 22 21 20 42 42 H 1.08000 * 126.57851 * 179.97438 * 23 22 21 43 43 H 1.07992 * 125.79366 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3862 -1.2492 6 6 2.0566 1.4307 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 3.6019 2.7401 1.3128 9 8 3.3893 3.5593 0.4441 10 7 4.4282 3.0402 2.3344 11 6 4.6855 2.0505 3.3834 12 6 5.8755 1.2093 2.9995 13 1 6.3884 1.3932 2.0671 14 6 6.3092 0.2048 3.8385 15 7 5.6841 -0.0194 4.9737 16 14 7.7846 -0.8374 3.3629 17 1 8.9756 0.0349 3.2019 18 1 8.0453 -1.8407 4.4262 19 1 7.5055 -1.5352 2.0822 20 6 5.0682 4.3565 2.3964 21 6 4.1858 5.3087 3.1618 22 6 4.2222 5.5201 4.4897 23 6 3.2296 6.4847 4.7782 24 6 2.6456 6.8046 3.6096 25 8 3.2334 6.0941 2.6330 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 3.5541 2.2879 -1.2055 30 1 3.5907 0.5106 -1.2951 31 1 2.6832 1.4889 -3.3852 32 1 1.4457 0.5290 -2.5389 33 1 1.4091 2.3064 -2.4494 34 1 2.3278 1.2395 2.1370 35 1 3.7085 0.6114 1.2057 36 1 4.8905 2.5625 4.3236 37 1 3.8111 1.4105 3.5015 38 1 5.9895 -0.7259 5.5642 39 1 6.0310 4.2691 2.9000 40 1 5.2199 4.7347 1.3854 41 1 4.8824 5.0438 5.1994 42 1 2.9864 6.8869 5.7506 43 1 1.8437 7.5158 3.4780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931269774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:21 Heat of formation + Delta-G solvation = -17.914277 kcal Electronic energy + Delta-G solvation = -23740.435844 eV Core-core repulsion = 20366.503062 eV Total energy + Delta-G solvation = -3373.932782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16860 -39.35188 -36.56626 -35.05455 -32.84607 -32.50156 -31.52964 -30.88290 -29.39961 -27.32339 -25.77240 -23.79181 -22.82987 -21.49187 -21.33427 -20.26182 -19.34315 -18.33632 -17.15244 -16.52631 -16.17992 -15.85995 -15.18303 -14.76738 -14.64248 -14.49152 -14.28957 -13.83666 -13.43213 -12.92149 -12.74621 -12.46766 -12.41286 -12.37549 -12.11681 -12.04315 -11.56675 -11.51653 -11.31188 -10.97591 -10.88518 -10.87553 -10.61224 -10.31850 -10.25149 -10.17637 -9.84806 -9.57311 -9.15207 -8.96756 -8.59661 -8.15739 -7.84179 -6.21895 -4.29906 2.03702 2.50500 2.91808 3.21764 3.24367 3.27418 3.30044 3.54711 4.03546 4.30845 5.02832 5.08554 5.11438 5.15168 5.33403 5.36485 5.45929 5.50033 5.55870 5.60408 5.81350 5.90649 5.96869 6.04761 6.07330 6.11324 6.12161 6.28723 6.34473 6.37730 6.42487 6.43317 6.61694 6.72069 6.75308 6.84136 6.87670 7.06245 7.16173 7.44609 7.53819 7.72426 8.01075 8.27099 8.74944 8.98652 9.38347 10.84816 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.007761 B = 0.007667 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3606.933175 B = 3650.975095 C = 6345.693622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.045 4.045 4 H 0.076 0.924 5 C -0.121 4.121 6 C -0.145 4.145 7 C -0.127 4.127 8 C 0.520 3.480 9 O -0.563 6.563 10 N -0.594 5.594 11 C 0.238 3.762 12 C -0.541 4.541 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.195 3.805 21 C -0.013 4.013 22 C -0.204 4.204 23 C -0.216 4.216 24 C -0.054 4.054 25 O -0.167 6.167 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.266 0.734 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 5.374 -4.746 9.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.151 4.151 3 C -0.064 4.064 4 H 0.094 0.906 5 C -0.158 4.158 6 C -0.202 4.202 7 C -0.166 4.166 8 C 0.309 3.691 9 O -0.444 6.444 10 N -0.324 5.324 11 C 0.119 3.881 12 C -0.579 4.579 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C 0.071 3.929 21 C -0.065 4.065 22 C -0.224 4.224 23 C -0.235 4.235 24 C -0.122 4.122 25 O -0.062 6.062 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.391 5.661 -5.322 10.061 hybrid contribution 0.763 -0.709 0.478 1.146 sum -5.628 4.952 -4.844 8.926 Atomic orbital electron populations 1.23752 0.95935 1.01321 1.03164 1.23019 0.95851 0.98444 0.97736 1.20172 0.96863 0.94962 0.94436 0.90611 1.21639 0.98030 1.03080 0.93084 1.21727 0.99700 1.01223 0.97586 1.21625 1.00137 0.96177 0.98683 1.20592 0.78565 0.89130 0.80806 1.90576 1.63652 1.50975 1.39191 1.48318 1.44873 1.13483 1.25769 1.19466 0.97163 0.86125 0.85385 1.21453 1.13955 1.16517 1.06013 0.91997 1.24934 0.97006 0.97030 0.94708 1.69920 1.40372 1.31972 1.10491 0.86581 0.82799 0.80005 0.78251 1.20099 1.21157 1.20049 1.19679 0.92425 0.80496 1.00255 1.23269 0.93517 0.96160 0.93574 1.21673 1.03153 1.02289 0.95305 1.21785 1.00261 1.02478 0.99018 1.23946 1.01325 1.00430 0.86522 1.84107 1.40963 1.44142 1.36998 0.88894 0.88897 0.87414 0.89654 0.92582 0.93431 0.93208 0.93091 0.89366 0.87636 0.94557 0.94220 0.92420 0.87162 0.89293 0.83390 0.83912 0.78763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.57 14.32 29.01 0.42 -2.15 16 2 C -0.13 -1.84 7.75 -36.03 -0.28 -2.12 16 3 C -0.05 -0.72 1.80 -91.77 -0.17 -0.89 16 4 H 0.08 1.27 7.60 -51.93 -0.39 0.88 16 5 C -0.12 -1.89 5.18 -26.74 -0.14 -2.03 16 6 C -0.15 -1.94 9.73 37.16 0.36 -1.58 16 7 C -0.13 -2.30 3.71 -27.88 -0.10 -2.41 16 8 C 0.52 10.62 7.35 -10.98 -0.08 10.53 16 9 O -0.56 -12.22 13.57 5.56 0.08 -12.14 16 10 N -0.59 -12.27 2.44 -176.43 -0.43 -12.70 16 11 C 0.24 5.48 4.97 -5.19 -0.03 5.46 16 12 C -0.54 -13.50 9.28 -34.44 -0.32 -13.82 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -23.93 13.29 55.43 0.74 -23.19 16 16 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 C 0.20 3.63 5.94 -5.20 -0.03 3.60 16 21 C -0.01 -0.24 6.90 -35.63 -0.25 -0.49 16 22 C -0.20 -3.45 10.81 -39.70 -0.43 -3.88 16 23 C -0.22 -3.18 10.91 -39.70 -0.43 -3.61 16 24 C -0.05 -0.78 12.09 29.41 0.36 -0.43 16 25 O -0.17 -3.03 10.65 5.69 0.06 -2.97 16 26 H 0.09 1.14 7.83 -52.49 -0.41 0.73 16 27 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.09 1.53 5.88 -51.93 -0.31 1.23 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.62 7.38 -51.93 -0.38 0.23 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.60 7.40 -51.93 -0.38 1.21 16 35 H 0.11 2.02 8.00 -51.93 -0.42 1.60 16 36 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.04 0.96 6.44 -51.93 -0.33 0.62 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.11 1.92 8.07 -51.93 -0.42 1.50 16 40 H 0.09 1.64 7.42 -51.93 -0.39 1.25 16 41 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 42 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.20 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -28.38 361.92 -7.12 -35.50 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.78 Total: 7.25 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.22 Total: -12.19 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.31 Total: -35.89 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.14 Total: -15.11 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.38 -7.12 -35.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931269774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.584 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds