Wall clock time and date at job start Tue Mar 31 2020 07:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50703 * 119.99765 * 2 1 4 4 H 1.09002 * 109.47083 * 359.97438 * 3 2 1 5 5 C 1.52993 * 109.46941 * 239.99679 * 3 2 1 6 6 C 1.52998 * 109.47227 * 65.00352 * 5 3 2 7 7 C 1.53000 * 109.46801 * 119.99713 * 3 2 1 8 8 C 1.50703 * 109.46912 * 184.99967 * 7 3 2 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99832 * 359.97438 * 10 8 7 12 12 C 1.50703 * 109.47045 * 90.00120 * 11 10 8 13 13 H 1.07996 * 119.99684 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99744 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99822 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99722 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47185 * 59.99950 * 16 14 12 18 18 H 1.48497 * 109.47225 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47338 * 300.00411 * 16 14 12 20 20 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 21 21 C 1.50699 * 109.47398 * 89.99557 * 20 10 8 22 22 C 1.34513 * 125.78792 * 89.99524 * 21 20 10 23 23 C 1.41388 * 106.83927 * 180.02562 * 22 21 20 24 24 C 1.34509 * 106.84236 * 0.02562 * 23 22 21 25 25 O 1.34301 * 125.79045 * 269.69722 * 21 20 10 26 26 H 1.07996 * 120.00074 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99628 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00074 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46975 * 185.00198 * 5 3 2 30 30 H 1.08997 * 109.47674 * 305.00137 * 5 3 2 31 31 H 1.09001 * 109.47528 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.47017 * 299.99820 * 6 5 3 33 33 H 1.09004 * 109.47339 * 59.99924 * 6 5 3 34 34 H 1.09002 * 109.47398 * 305.00045 * 7 3 2 35 35 H 1.09001 * 109.47194 * 65.00225 * 7 3 2 36 36 H 1.08997 * 109.47024 * 210.00620 * 11 10 8 37 37 H 1.09000 * 109.46875 * 330.00379 * 11 10 8 38 38 H 0.97008 * 119.99205 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.47082 * 209.99555 * 20 10 8 40 40 H 1.09004 * 109.46754 * 329.99821 * 20 10 8 41 41 H 1.08000 * 126.58057 * 359.97438 * 22 21 20 42 42 H 1.08000 * 126.57851 * 179.97438 * 23 22 21 43 43 H 1.07992 * 125.79366 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3862 -1.2492 6 6 2.0566 1.4307 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 3.6019 2.7401 1.3128 9 8 3.3893 3.5593 0.4441 10 7 4.4282 3.0402 2.3344 11 6 4.6855 2.0505 3.3834 12 6 5.8755 1.2093 2.9995 13 1 6.3884 1.3932 2.0671 14 6 6.3092 0.2048 3.8385 15 7 5.6841 -0.0194 4.9737 16 14 7.7846 -0.8374 3.3629 17 1 8.9756 0.0349 3.2019 18 1 8.0453 -1.8407 4.4262 19 1 7.5055 -1.5352 2.0822 20 6 5.0682 4.3565 2.3964 21 6 4.1858 5.3087 3.1618 22 6 4.2222 5.5201 4.4897 23 6 3.2296 6.4847 4.7782 24 6 2.6456 6.8046 3.6096 25 8 3.2334 6.0941 2.6330 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 3.5541 2.2879 -1.2055 30 1 3.5907 0.5106 -1.2951 31 1 2.6832 1.4889 -3.3852 32 1 1.4457 0.5290 -2.5389 33 1 1.4091 2.3064 -2.4494 34 1 2.3278 1.2395 2.1370 35 1 3.7085 0.6114 1.2057 36 1 4.8905 2.5625 4.3236 37 1 3.8111 1.4105 3.5015 38 1 5.9895 -0.7259 5.5642 39 1 6.0310 4.2691 2.9000 40 1 5.2199 4.7347 1.3854 41 1 4.8824 5.0438 5.1994 42 1 2.9864 6.8869 5.7506 43 1 1.8437 7.5158 3.4780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931269774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:18 Heat of formation + Delta-G solvation = -31.145744 kcal Electronic energy + Delta-G solvation = -23741.009604 eV Core-core repulsion = 20366.503062 eV Total energy + Delta-G solvation = -3374.506541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -43.45858 -40.94839 -37.88862 -36.72313 -34.68017 -33.86645 -32.63769 -32.32275 -30.75466 -29.13548 -27.16641 -25.31159 -24.52591 -22.67757 -22.61168 -21.55554 -20.52146 -19.93108 -18.78510 -18.13189 -17.77276 -17.38969 -16.63378 -16.31418 -16.27359 -15.73790 -15.59583 -15.18361 -14.73555 -14.40820 -14.29168 -13.86963 -13.73861 -13.69649 -13.51685 -13.41074 -13.31555 -12.96540 -12.77650 -12.61798 -12.53720 -12.17198 -12.03587 -11.88341 -11.74922 -11.60634 -11.48166 -10.85520 -10.68895 -10.51900 -10.17114 -9.63012 -9.39110 -8.19371 -6.33902 0.73942 1.44452 1.44613 1.45536 1.52843 1.66298 1.73362 2.18400 2.39432 2.52608 3.11602 3.67551 3.84625 3.87370 4.06413 4.15754 4.17584 4.24749 4.40798 4.42365 4.46017 4.56100 4.62832 4.70000 4.80088 4.87550 4.92549 5.01847 5.03019 5.07612 5.13071 5.19727 5.21854 5.24305 5.46501 5.48948 5.61174 5.65237 5.77439 5.80422 5.97132 6.05595 6.24764 6.54161 6.80319 7.29139 7.41041 8.86443 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.007761 B = 0.007667 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3606.933175 B = 3650.975095 C = 6345.693622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.151 4.151 3 C -0.037 4.037 4 H 0.065 0.935 5 C -0.120 4.120 6 C -0.138 4.138 7 C -0.120 4.120 8 C 0.514 3.486 9 O -0.577 6.577 10 N -0.597 5.597 11 C 0.256 3.744 12 C -0.546 4.546 13 H 0.056 0.944 14 C 0.025 3.975 15 N -0.919 5.919 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.271 1.271 20 C 0.195 3.805 21 C -0.043 4.043 22 C -0.208 4.208 23 C -0.223 4.223 24 C -0.045 4.045 25 O -0.191 6.191 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.021 0.979 37 H 0.027 0.973 38 H 0.268 0.732 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.173 0.827 43 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 5.280 -5.047 10.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.169 4.169 3 C -0.056 4.056 4 H 0.083 0.917 5 C -0.158 4.158 6 C -0.195 4.195 7 C -0.160 4.160 8 C 0.304 3.696 9 O -0.459 6.459 10 N -0.327 5.327 11 C 0.136 3.864 12 C -0.585 4.585 13 H 0.075 0.925 14 C -0.176 4.176 15 N -0.558 5.558 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.196 1.196 20 C 0.072 3.928 21 C -0.094 4.094 22 C -0.228 4.228 23 C -0.241 4.241 24 C -0.112 4.112 25 O -0.087 6.087 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.166 0.834 42 H 0.191 0.809 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -7.270 5.582 -5.630 10.756 hybrid contribution 0.970 -0.583 0.607 1.284 sum -6.300 4.998 -5.023 9.481 Atomic orbital electron populations 1.23967 0.95404 1.02504 1.00398 1.22905 0.96351 0.97431 1.00227 1.20074 0.96303 0.95961 0.93253 0.91702 1.21587 0.98194 1.01694 0.94282 1.21661 0.99483 1.01692 0.96676 1.21608 0.99990 0.94379 1.00028 1.20989 0.78389 0.89813 0.80401 1.90561 1.64124 1.51656 1.39535 1.48314 1.45142 1.13974 1.25317 1.19076 0.96037 0.85985 0.85315 1.21632 1.14347 1.16794 1.05715 0.92530 1.25617 0.99329 0.98054 0.94605 1.70013 1.41753 1.32636 1.11381 0.85658 0.79820 0.78520 0.78016 1.19703 1.20848 1.19572 1.19686 0.92917 0.79859 1.00337 1.23072 0.94805 0.97489 0.93997 1.21892 1.03519 1.02526 0.94833 1.22142 0.99489 1.01907 1.00611 1.24868 1.01098 0.99569 0.85694 1.84084 1.41337 1.44781 1.38507 0.88682 0.86667 0.86797 0.92461 0.92386 0.92360 0.91887 0.93415 0.89600 0.88756 0.96064 0.95465 0.92326 0.86692 0.89678 0.83411 0.80914 0.74490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.24 14.32 67.77 0.97 -3.27 16 2 C -0.15 -4.01 7.75 25.64 0.20 -3.81 16 3 C -0.04 -1.18 1.80 -11.54 -0.02 -1.20 16 4 H 0.06 2.19 7.60 -2.39 -0.02 2.17 16 5 C -0.12 -3.75 5.18 30.59 0.16 -3.59 16 6 C -0.14 -3.52 9.73 71.98 0.70 -2.82 16 7 C -0.12 -4.49 3.71 29.85 0.11 -4.38 16 8 C 0.51 21.64 7.35 87.66 0.64 22.28 16 9 O -0.58 -25.75 13.57 -3.02 -0.04 -25.79 16 10 N -0.60 -25.49 2.44 -830.50 -2.03 -27.51 16 11 C 0.26 12.16 4.97 85.63 0.43 12.58 16 12 C -0.55 -27.69 9.28 25.60 0.24 -27.46 16 13 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 14 C 0.02 1.27 5.46 84.66 0.46 1.73 16 15 N -0.92 -49.78 13.29 21.45 0.28 -49.50 16 16 Si 0.95 40.88 29.54 68.60 2.03 42.90 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 C 0.20 7.51 5.94 85.63 0.51 8.02 16 21 C -0.04 -1.57 6.90 24.83 0.17 -1.40 16 22 C -0.21 -6.98 10.81 22.19 0.24 -6.74 16 23 C -0.22 -6.14 10.91 22.19 0.24 -5.89 16 24 C -0.05 -1.21 12.09 66.97 0.81 -0.40 16 25 O -0.19 -6.86 10.65 -2.54 -0.03 -6.89 16 26 H 0.09 2.13 7.83 -2.91 -0.02 2.11 16 27 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.06 2.11 5.88 -2.39 -0.01 2.09 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.44 7.38 -2.39 -0.02 1.42 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 3.20 7.40 -2.39 -0.02 3.18 16 35 H 0.09 3.71 8.00 -2.39 -0.02 3.69 16 36 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 37 H 0.03 1.36 6.44 -2.39 -0.02 1.34 16 38 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 39 H 0.12 4.17 8.07 -2.39 -0.02 4.15 16 40 H 0.08 3.28 7.42 -2.39 -0.02 3.26 16 41 H 0.15 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.24 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -60.78 361.92 7.05 -53.73 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.97 Total: 29.40 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 5.86 Total: -16.34 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -1.74 Total: -77.01 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.07 Total: -32.68 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -60.78 7.05 -53.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931269774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.585 kcal (2) G-P(sol) polarization free energy of solvation -60.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds